Ss1.1-Lng1-LNG010009C10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCAGGCAAAAGAATGCCAGAAGTTTATGTATCCAGACCCAGACCTCTCCAGATGTGCT GTCCTCGGAAAAAACGCTCGAGTTGGCACAGTTTAAGACAAAATGCGAGAAGCAAAGTGG ATGTATCCTGCAGCTCAAGCAGCTGCTCTCCTGCGGCAACGCCAAGTTTGAAGCATTAAC GGTTGTGATTCAGCACCTCCTCTCCGAGCGGGAGGAAGCACTGAAACAACACAAAGCCCT GTCTCAAGAACTTGTTAACCTCCGGGGAGAGCTAGTCACTGCTTCAACCACCTGTGAGAA GTTAGAAAAAGCTAGGAATGAGTTGCAAATTGCTTATGAAGGATTTGTCCAGAAGCTCAA CCAGCAGCACCAGACTGATCTAACAGAACTGGAGAATCGGCTGAAGGAATTTTACACCGG GGAGTGTGAAAAGCTTCAGAATATCTACATTGAAGAGGCAGAGAAGTATAAAACTCAATT GCAGGAGCAGTTTGACAACTTAAATGCTGCCCATGAAACCTCTAAGCTGGAAATTGAAGC GAGCCACTCAGAGAAAATAGAATTGCTAAAGAAGGCCTATGAGACCTCCCTTTCAGAAAT CAAGAAAAGCCATGAAATGGAAAAGAAGTCACTTGAGGATGTGCTTTATGAGAAGCAGGA ATCACTAGAGAAACAAATCGATGATCTGAAGAGTGAAAATGATGCTTTAAATGAAAAGCT GAAATCAGAAGAACAAAAAAGAGTATCAAGAGAGAAAGCAAATTCAGTAAGTTGTGTGCC TCCCCATCGCTACTGAATTCTTCTGCTCCTGTATCTTTTAGAGTCAATTAAGTGTCCAGT AGGTAGAGAAGTAATTCTGGTTTGGAATCCTTTCCATATCTTGCAGTGTGATTTTTTAAA CTGTATAAAGTGGCTTCTTTGTTTACTGGCATCTTTTTTTTTTTTTTGGCCATGCCCACA GCATGTGGAAGTTCCAGGGCCAGGGATTGAACCCATGCCACAGCAGTAACATTTCCAGAT CCTTAACCCACTAAGCCACAAAGGGAGTCCAACATTTTTTTTTTAATCCTAAAAGCTGAC ATAACAGATGAAGCCCAATATATTGTGAGTGATCTAAACTAATAAAACTAATACGTACAG GAAAACAATTAGGGTCAGAATTTTATATGAAGACTTCACCTTTTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCAGGCAAAAGAATGCCAGAAGTTTATGTATCCAGACCCAGACCTCTCCAGATGTGCT GTCCTCGGAAAAAACGCTCGAGTTGGCACAGTTTAAGACAAAATGCGAGAAGCAAAGTGG ATGTATCCTGCAGCTCAAGCAGCTGCTCTCCTGCGGCAACGCCAAGTTTGAAGCATTAAC GGTTGTGATTCAGCACCTCCTCTCCGAGCGGGAGGAAGCACTGAAACAACACAAAGCCCT GTCTCAAGAACTTGTTAACCTCCGGGGAGAGCTAGTCACTGCTTCAACCACCTGTGAGAA GTTAGAAAAAGCTAGGAATGAGTTGCAAATTGCTTATGAAGGATTTGTCCAGAAGCTCAA CCAGCAGCACCAGACTGATCTAACAGAACTGGAGAATCGGCTGAAGGAATTTTACACCGG GGAGTGTGAAAAGCTTCAGAATATCTACATTGAAGAGGCAGAGAAGTATAAAACTCAATT GCAGGAGCAGTTTGACAACTTAAATGCTGCCCATGAAACCTCTAAGCTGGAAATTGAAGC GAGCCACTCAGAGAAAATAGAATTGCTAAAGAAGGCCTATGAGACCTCCCTTTCAGAAAT CAAGAAAAGCCATGAAATGGAAAAGAAGTCACTTGAGGATGTGCTTTATGAGAAGCAGGA ATCACTAGAGAAACAAATCGATGATCTGAAGAGTGAAAATGATGCTTTAAATGAAAAGCT GAAATCAGAAGAACAAAAAAGAGTATCAAGAGAGAAAGCAAATTCAGTAAGTTGTGTGCC TCCCCATCGCTACTGAATTCTTCTGCTCCTGTATCTTTTAGAGTCAATTAAGTGTCCAGT AGGTAGAGAAGTAATTCTGGTTTGGAATCCTTTCCATATCTTGCAGTGTGATTTTTTAAA CTGTATAAAGTGGCTTCTTTGTTTACTGGCATCTTTTTTTTTTTTTTGGCCATGCCCACA GCATGTGGAAGTTCCAGGGCCAGGGATTGAACCCATGCCACAGCAGTAACATTTCCAGAT CCTTAACCCACTAAGCCACAAAGGGAGTCCAACATTTTTTTTTTAATCCTAAAAGCTGAC ATAACAGATGAAGCCCAATATATTGTGAGTGATCTAAACTAATAAAACTAATACGTACAG GAAAACAATTAGGGTCAGAATTTTATATGAAGACTTCACCTTTTTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 825-943, + strand, RNAz p=0.508482 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 825-943, + strand, RNAz p=0.508482 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_001001927, + |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-208, gnl|bosTau2|chr27 (11380507-11380714) | |
| 1-208, gnl|canFam2|chr16 (43953701-43953950) | |
| 1-208, gnl|dasNov1|scaffold_186500 (879-1125) | |
| 1-208, gnl|echTel1|scaffold_284914 (47648-47897) | |
| 1-208, gnl|galGal2|chr4 (63465589-63465356) | |
| 1-208, gnl|hg17|chr8 (17586103-17586352) | |
| 1-208, gnl|Hg17|chr8 (17586324-17586117) | |
| 1-208, gnl|mm7|chr8 (39806054-39806304) | |
| 1-208, gnl|Mm7|chr8 (39806275-39806068) | |
| 1-208, gnl|monDom2|scaffold_32 (13068148-13067907) | |
| 1-208, gnl|oryCun1|scaffold_210861 (124933-124684) | |
| 1-208, gnl|panTro1|chr7_random (16495250-16495499) | |
| 1-208, gnl|rheMac2|chr8 (17562720-17562969) | |
| 1-208, gnl|rn3|chr16 (54630394-54630145) | |
| 274-493, gnl|bosTau2|chr27 (11414863-11415082) | |
| 274-493, gnl|canFam2|chr16 (43926518-43926670) | |
| 274-493, gnl|danRer3|chr14 (30545299-30545442) | |
| 274-493, gnl|fr1|chrUn (168273064-168272923) | |
| 274-493, gnl|galGal2|chr4 (63485700-63485548) | |
| 274-493, gnl|hg17|chr8 (17557640-17557780) | |
| 274-493, gnl|Hg17|chr8 (17557856-17557649) | |
| 274-493, gnl|mm7|chr8 (39785986-39786133) | |
| 274-493, gnl|Mm7|chr8 (39786209-39785990) | |
| 274-493, gnl|monDom2|scaffold_32 (13082929-13082779) | |
| 274-493, gnl|oryCun1|scaffold_131526 (1302-1453) | |
| 274-493, gnl|panTro1|chr7 (18348211-18348351) | |
| 274-493, gnl|rheMac2|chr8 (17542884-17543024) | |
| 274-493, gnl|rn3|chr16 (54651217-54651070) | |
| 274-493, gnl|tetNig1|chr1 (9354112-9353979) | |
| 274-493, gnl|xenTro1|scaffold_979 (137087-136941) | |
| 669-943, gnl|bosTau2|chr27 (11419013-11419293) | |
| 669-943, gnl|Hg17|chr8 (17555072-17554798) | |
| 1055-1182, gnl|bosTau2|chr27 (11419284-11419416) | |
| 1055-1182, gnl|Hg17|chr8 (17554807-17554689) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-208, gnl|bosTau2|chr27 (11380507-11380714) | |
| 1-208, gnl|canFam2|chr16 (43953701-43953950) | |
| 1-208, gnl|dasNov1|scaffold_186500 (879-1125) | |
| 1-208, gnl|echTel1|scaffold_284914 (47648-47897) | |
| 1-208, gnl|galGal2|chr4 (63465589-63465356) | |
| 1-208, gnl|hg17|chr8 (17586103-17586352) | |
| 1-208, gnl|Hg17|chr8 (17586324-17586117) | |
| 1-208, gnl|mm7|chr8 (39806054-39806304) | |
| 1-208, gnl|Mm7|chr8 (39806275-39806068) | |
| 1-208, gnl|monDom2|scaffold_32 (13068148-13067907) | |
| 1-208, gnl|oryCun1|scaffold_210861 (124933-124684) | |
| 1-208, gnl|panTro1|chr7_random (16495250-16495499) | |
| 1-208, gnl|rheMac2|chr8 (17562720-17562969) | |
| 1-208, gnl|rn3|chr16 (54630394-54630145) | |
| 274-493, gnl|bosTau2|chr27 (11414863-11415082) | |
| 274-493, gnl|canFam2|chr16 (43926518-43926670) | |
| 274-493, gnl|danRer3|chr14 (30545299-30545442) | |
| 274-493, gnl|fr1|chrUn (168273064-168272923) | |
| 274-493, gnl|galGal2|chr4 (63485700-63485548) | |
| 274-493, gnl|hg17|chr8 (17557640-17557780) | |
| 274-493, gnl|Hg17|chr8 (17557856-17557649) | |
| 274-493, gnl|mm7|chr8 (39785986-39786133) | |
| 274-493, gnl|Mm7|chr8 (39786209-39785990) | |
| 274-493, gnl|monDom2|scaffold_32 (13082929-13082779) | |
| 274-493, gnl|oryCun1|scaffold_131526 (1302-1453) | |
| 274-493, gnl|panTro1|chr7 (18348211-18348351) | |
| 274-493, gnl|rheMac2|chr8 (17542884-17543024) | |
| 274-493, gnl|rn3|chr16 (54651217-54651070) | |
| 274-493, gnl|tetNig1|chr1 (9354112-9353979) | |
| 274-493, gnl|xenTro1|scaffold_979 (137087-136941) | |
| 669-943, gnl|bosTau2|chr27 (11419013-11419293) | |
| 669-943, gnl|Hg17|chr8 (17555072-17554798) | |
| 1055-1182, gnl|bosTau2|chr27 (11419284-11419416) | |
| 1055-1182, gnl|Hg17|chr8 (17554807-17554689) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| ova (0.129132) | |
| cty (0.10408) |