Non-Coding RNA Search

Ss1.1-Lng1-LNG010009E09.5.5

Sequence:


               
               TATGTGTGGCTGGGGAATTCATGTGGAGGTCAGAGTGGAAGCAGGTGTGAGTGGGTCCAG
CAGAAGGAGACATGGCTGCCAAGGTGTTTGAGTCCATCGGCAAGTTTGGCCTGGCCTTAG
CCGTTGCAGGAGGCGTGGTGAACTCTGCCTTGTATAATGTGGATGCTGGGCACAGAGCTG
TCATCTTTGACCGGTTCCGTGGCGTGCAGGACATTGTAGTAGGGGAAGGGACGCACTTTC
TCATCCCTTGGGTACAGAAGCCAATTATCTTTGACTGCCGCTCTCGACCACGTAACGTGC
CAGTGATCACTGGTAGCAAAGATTTACAGAATGTCAACATCACCCTGCGTATCCTCTTTC
GGCCGGTCGCCAGCCAGCTCCCCCGCATCTTCACCAGCATCGGGGAGGACTACGACGAGC
GCGTGCTGCCCTCCATCACCACAGAGATCCTCAAGTCCGTGGTGGCTCGCTTTGACGCTG
GAGAACTGATCACCCAGAGAGAGCTGGTCTCCAGACAGGTGAGCGATGACCTCACGGAGC
GAGCAGCCACCTTTGGGCTCATCCTGGATGACGTGTCTCTGACGCATCTGACCTTCGGCA
AGGAGTTCACAGAAGCGGTGGAAGCCAAACAGGTGGCTCAGCAGGAAGCAGAGAGGGCCA
GATTTGTGGTGGAAAAGGCTGAGCAGCAGAAGAAGGCAGCCATCATCTCCGCCGAGGGCG
ACTCCAAGGCGGCGGAGCTGATCGCCAACTCGCTGGCCACTGCGGGCGACGGCCTCATCG
AGCTGCGCAAGCTGGAGGCCGCGGAGGACATCGCGTACCAGCTGTCACGCTCCCGGAACA
TCACCTACCTGCCGGCCGGCCAGTCGGTGCTCCTCCAGCTGCCGCAGTGAGGCCCGCCCC
TCCCGGGGCCACTGGACCCCAGCCCCGGTGATCTCAGCCGCTCCTTCCTTCTCCCACCCC
AGAAATCACTGTGAAACTTCATGATTGGCTTAAAGTGAAGGAAATAAAAGTAAAATCACT
TCGGATTTCTAATTACTCTATCAGACGAAGCTCTTTCATTCCTCTCATTTCCATCCCCTC
TTTTTATCCACCTCCCCACCAAAAATTGCCAAGTGCCTATGCACACCCACTTGGCTCCCG
TCTCGGGGGCCTGCTGGCGCTCCCACCTAGGCACTGGCAATGGGCAGAAGAGAGGCAGGG
CTGTGAGTGGGACGAGCCGGGCAGGACGCTGGTGGCCTCCAACCGATCAGTCATTCAAGA
CCTGAGGCCCATGCAGCTGAACTGCGAACACAGGCCTCGGTTTTTTTCCAGTGGTCCCTG
CACAGAGAGGTGCTGGGGAGGGTCCGAGAGGAAGCGATCTGTCTCTCAGCATAAGGCTGA
TTCTCTTTAACTGGGGCCAGCGGAAGCAGGTGTGTACAACCGACGTGGACTGAAAACTCT
GCCCCTGTGAAGGTGGGTGGGCCTGATGTGCTGCCCCTCAGGGTCCTAAAACTGGAGTGG
ACTCGGCTAGTGAAAGAGCGGCCCTGGACCGAGATGTGAGTCCTGCAGACTTCCTGTCCA
CCTCCCACCTTGGTGTCAAGTACCGGCGGAATTCCAGCTTGAAGGATTGCATCCTGCCGA
GGCTGCACAGGCCTGCCAAAGACGTGTGCGTCCTGCGTTCCTGGCTCCCTCGTTCAGAGA
CTGCCCTTACAGAGGGCTCTGCGCCTGTGCCTTGAAACAACCACCAGAAGAAAACAAGTG
TGTGTAAACTGCTATCAATAAATGACATCCAGACCTCCCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGTGTGGCTGGGGAATTCATGTGGAGGTCAGAGTGGAAGCAGGTGTGAGTGGGTCCAG
CAGAAGGAGACATGGCTGCCAAGGTGTTTGAGTCCATCGGCAAGTTTGGCCTGGCCTTAG
CCGTTGCAGGAGGCGTGGTGAACTCTGCCTTGTATAATGTGGATGCTGGGCACAGAGCTG
TCATCTTTGACCGGTTCCGTGGCGTGCAGGACATTGTAGTAGGGGAAGGGACGCACTTTC
TCATCCCTTGGGTACAGAAGCCAATTATCTTTGACTGCCGCTCTCGACCACGTAACGTGC
CAGTGATCACTGGTAGCAAAGATTTACAGAATGTCAACATCACCCTGCGTATCCTCTTTC
GGCCGGTCGCCAGCCAGCTCCCCCGCATCTTCACCAGCATCGGGGAGGACTACGACGAGC
GCGTGCTGCCCTCCATCACCACAGAGATCCTCAAGTCCGTGGTGGCTCGCTTTGACGCTG
GAGAACTGATCACCCAGAGAGAGCTGGTCTCCAGACAGGTGAGCGATGACCTCACGGAGC
GAGCAGCCACCTTTGGGCTCATCCTGGATGACGTGTCTCTGACGCATCTGACCTTCGGCA
AGGAGTTCACAGAAGCGGTGGAAGCCAAACAGGTGGCTCAGCAGGAAGCAGAGAGGGCCA
GATTTGTGGTGGAAAAGGCTGAGCAGCAGAAGAAGGCAGCCATCATCTCCGCCGAGGGCG
ACTCCAAGGCGGCGGAGCTGATCGCCAACTCGCTGGCCACTGCGGGCGACGGCCTCATCG
AGCTGCGCAAGCTGGAGGCCGCGGAGGACATCGCGTACCAGCTGTCACGCTCCCGGAACA
TCACCTACCTGCCGGCCGGCCAGTCGGTGCTCCTCCAGCTGCCGCAGTGAGGCCCGCCCC
TCCCGGGGCCACTGGACCCCAGCCCCGGTGATCTCAGCCGCTCCTTCCTTCTCCCACCCC
AGAAATCACTGTGAAACTTCATGATTGGCTTAAAGTGAAGGAAATAAAAGTAAAATCACT
TCGGATTTCTAATTACTCTATCAGACGAAGCTCTTTCATTCCTCTCATTTCCATCCCCTC
TTTTTATCCACCTCCCCACCAAAAATTGCCAAGTGCCTATGCACACCCACTTGGCTCCCG
TCTCGGGGGCCTGCTGGCGCTCCCACCTAGGCACTGGCAATGGGCAGAAGAGAGGCAGGG
CTGTGAGTGGGACGAGCCGGGCAGGACGCTGGTGGCCTCCAACCGATCAGTCATTCAAGA
CCTGAGGCCCATGCAGCTGAACTGCGAACACAGGCCTCGGTTTTTTTCCAGTGGTCCCTG
CACAGAGAGGTGCTGGGGAGGGTCCGAGAGGAAGCGATCTGTCTCTCAGCATAAGGCTGA
TTCTCTTTAACTGGGGCCAGCGGAAGCAGGTGTGTACAACCGACGTGGACTGAAAACTCT
GCCCCTGTGAAGGTGGGTGGGCCTGATGTGCTGCCCCTCAGGGTCCTAAAACTGGAGTGG
ACTCGGCTAGTGAAAGAGCGGCCCTGGACCGAGATGTGAGTCCTGCAGACTTCCTGTCCA
CCTCCCACCTTGGTGTCAAGTACCGGCGGAATTCCAGCTTGAAGGATTGCATCCTGCCGA
GGCTGCACAGGCCTGCCAAAGACGTGTGCGTCCTGCGTTCCTGGCTCCCTCGTTCAGAGA
CTGCCCTTACAGAGGGCTCTGCGCCTGTGCCTTGAAACAACCACCAGAAGAAAACAAGTG
TGTGTAAACTGCTATCAATAAATGACATCCAGACCTCCCAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               PHB_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               PHB_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               439-678, - strand, RNAz p=0.629074
               

               
               879-982, - strand, RNAz p=0.916295

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               439-678, - strand, RNAz p=0.629074
               

               
               879-982, - strand, RNAz p=0.916295

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1044, gnl|bosTau2|chr12 (45798126-45799171)
               

               
               2-1044, gnl|Hg17|chr1 (59177310-59178341)
               

               
               2-1044, gnl|Mm7|chr15 (6480852-6481859)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1044, gnl|bosTau2|chr12 (45798126-45799171)
               

               
               2-1044, gnl|Hg17|chr1 (59177310-59178341)
               

               
               2-1044, gnl|Mm7|chr15 (6480852-6481859)

Expressed library(ies): 28 entry(ies)

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Expressed library(ies): 28 entry(ies)

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               eye (0.511509)
               

               
               clu (0.478583)
               

               
               ece (0.45861)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               cly (0.361925)
               

               
               cty (0.31224)
               

               
               cag (0.302389)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               eep (0.245128)
               

               
               nms (0.213858)
               

               
               nbm (0.198649)
               

               
               eje (0.197668)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.511509)
               

               
               clu (0.478583)
               

               
               ece (0.45861)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               cly (0.361925)
               

               
               cty (0.31224)
               

               
               cag (0.302389)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               eep (0.245128)
               

               
               nms (0.213858)
               

               
               nbm (0.198649)
               

               
               eje (0.197668)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

	439-678, - strand, RNAz p=0.629074
	879-982, - strand, RNAz p=0.916295

	2-1044, gnl\|bosTau2\|chr12 (45798126-45799171)
	2-1044, gnl\|Hg17\|chr1 (59177310-59178341)
	2-1044, gnl\|Mm7\|chr15 (6480852-6481859)

	eye (0.511509)
	clu (0.478583)
	ece (0.45861)
	col (0.390016)
	elu (0.385356)
	nlu (0.383362)
	cly (0.361925)
	cty (0.31224)
	cag (0.302389)
	pty (0.285429)
	lnt (0.284616)
	eep (0.245128)
	nms (0.213858)
	nbm (0.198649)
	eje (0.197668)
	ill (0.175593)
	fbs (0.175346)
	duo (0.172801)
	fhi (0.169578)
	cki (0.165235)
	csp (0.161186)
	tbr (0.154178)
	eli (0.151814)
	spl (0.143184)
	hyp (0.142837)
	hlv (0.139256)
	ese (0.126502)
	eru (0.120048)