Non-Coding RNA Search

Ss1.1-Lng1-LNG010009F07.5

Sequence:


               
               GTGCAGGGCCGGGTGGACGCGGCGGCGGCGGCGGTAGCGGGCCTTGAGACTGACTGCCGT
GGTTGTTTTGGAGCGCATTTGGCAGGCCACCTTCGCCGCCCTGGCTGACAGTCGTGCGGC
CGGCGCCATGTCTGTGAGCGAGATCTTCGTGGAGCTGCAGGGCTTTTTGGCTGCCGAGCA
GGACATCAGAGAGGAAATCCGAAAAGTTGTACAGAGTTTAGAACAAACAGCCCGAGAGAT
TTTAACTCTACTCCAAGGGGTCCATCAGGGTGCTGGGTTTCAGGACATTCCAAAGAGGTG
TTTGAAAGCTCGAGAACATTTTGGTACAGTAAAAACACATCTAACGTCTTTGAAGACCAA
GTTCCCTGCTGAACAGTATTACAGGTTTCATGAACACTGGAGGTTCGTGCTGCAGCGCTT
GGTCTTCTTGGCGGCCTTCGTTGTGTACTTGGAATCAGAAACCCTAGTGACTCGAGAAGC
GGTTACAGAGATCCTCGGCATTGAGCCAGATCGGGAGAAGGGATTTCATCTGGATGTAGA
AGATTACCTCTCAGGAGTTCTAATTCTTGCTAGTGAACTGTCGAGGCTGTCGGTCAACAG
CGTGACTGCAGGAGATTACGCGAGGCCCCTGCACATCTCCACCTTCATCAATGAGCTGGA
TTCCGGCTTCCGCCTTCTCAACCTCAAAAATGACTCCCTGCGGAAGCGCTACGACGGCCT
CAAGTATGATGTGAAGAAGGTGGAGGAGGTGGTCTATGATCTCTCCATCCGAGGCTTCAA
CAAGGAGACGGTGGCGGCCTGCTCGGAGAAGTAGGAATCCCACCTGCCCGCCTGCCCTGG
CAAGCTCTGCACTTGCTGTTCCTAACCGGTTGTGTGGTGTGTCAGAAGTGAAACACTTTT
ATAGGGGTGAAAGGATGGCCTTTATAAGGACAGATTTCTTGTTGTTTTGGTGAATTTGCT
CTGTAATTCAGTGTATTTCAGTTCTTTCCAAAACTGTAAATGTCAGTCTCCCGGTAAAGT
CCTTTTCTTGCTTACCCTGACGCTGTTGCTGTACTGATTGAGAAGTTTCCTGTCGTGTTT
GTGATTCTTCCAGAAGTGATTCTTGATGTTTTCTATATCCAGGTTAGCCATCGGTACCCA
GATACAGCCTGGATACGTATCAAAATAGATGATTACAAAGGATGGTTGCCAAGCAAAGGA
AACTTATTTTCTATTTTCCTTCCTTATTTTAAGCCTTGTGAATAAATCAGATGTTGAGTT
TTTTTGCAGGGGAATTACAGCCCCAGGGTTCTCTCTCACTGCCATCTAAATATAAAAGAT
TAAACTGCAAAGTCAAGTCCAACAGATTATTTTGGGACATTTTTGTATTAAGGGTTGAGT
AACATCATTTGGCTCTCTTTACCAGGTAGGGAATAGGGTTAGTGTTTTAAGACACCTCTG
TTTTCTGATGTTGCCTTAACATTCTGCAATTGTAGCAATTAAAAATTGTCTCCACACACA
TCTTGAGCTAACATTTCATATGATATGTTTCTAAGCTTTGAAACCTTTTACTTAATAGCC
AGGTGACCATTAGGTCTGGAAGTGTGAAGCCGCTTAGTGGAGTTAATTCTCAACACCCTG
ACTGGGAAAGTTCTGAGAGAAATATGCTATGCTTTATCTGGAAGAAAGAGAAAATCTTGA
ATTAAAAACAAAAAAATTAGCTGACTTGGTAATGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCAGGGCCGGGTGGACGCGGCGGCGGCGGCGGTAGCGGGCCTTGAGACTGACTGCCGT
GGTTGTTTTGGAGCGCATTTGGCAGGCCACCTTCGCCGCCCTGGCTGACAGTCGTGCGGC
CGGCGCCATGTCTGTGAGCGAGATCTTCGTGGAGCTGCAGGGCTTTTTGGCTGCCGAGCA
GGACATCAGAGAGGAAATCCGAAAAGTTGTACAGAGTTTAGAACAAACAGCCCGAGAGAT
TTTAACTCTACTCCAAGGGGTCCATCAGGGTGCTGGGTTTCAGGACATTCCAAAGAGGTG
TTTGAAAGCTCGAGAACATTTTGGTACAGTAAAAACACATCTAACGTCTTTGAAGACCAA
GTTCCCTGCTGAACAGTATTACAGGTTTCATGAACACTGGAGGTTCGTGCTGCAGCGCTT
GGTCTTCTTGGCGGCCTTCGTTGTGTACTTGGAATCAGAAACCCTAGTGACTCGAGAAGC
GGTTACAGAGATCCTCGGCATTGAGCCAGATCGGGAGAAGGGATTTCATCTGGATGTAGA
AGATTACCTCTCAGGAGTTCTAATTCTTGCTAGTGAACTGTCGAGGCTGTCGGTCAACAG
CGTGACTGCAGGAGATTACGCGAGGCCCCTGCACATCTCCACCTTCATCAATGAGCTGGA
TTCCGGCTTCCGCCTTCTCAACCTCAAAAATGACTCCCTGCGGAAGCGCTACGACGGCCT
CAAGTATGATGTGAAGAAGGTGGAGGAGGTGGTCTATGATCTCTCCATCCGAGGCTTCAA
CAAGGAGACGGTGGCGGCCTGCTCGGAGAAGTAGGAATCCCACCTGCCCGCCTGCCCTGG
CAAGCTCTGCACTTGCTGTTCCTAACCGGTTGTGTGGTGTGTCAGAAGTGAAACACTTTT
ATAGGGGTGAAAGGATGGCCTTTATAAGGACAGATTTCTTGTTGTTTTGGTGAATTTGCT
CTGTAATTCAGTGTATTTCAGTTCTTTCCAAAACTGTAAATGTCAGTCTCCCGGTAAAGT
CCTTTTCTTGCTTACCCTGACGCTGTTGCTGTACTGATTGAGAAGTTTCCTGTCGTGTTT
GTGATTCTTCCAGAAGTGATTCTTGATGTTTTCTATATCCAGGTTAGCCATCGGTACCCA
GATACAGCCTGGATACGTATCAAAATAGATGATTACAAAGGATGGTTGCCAAGCAAAGGA
AACTTATTTTCTATTTTCCTTCCTTATTTTAAGCCTTGTGAATAAATCAGATGTTGAGTT
TTTTTGCAGGGGAATTACAGCCCCAGGGTTCTCTCTCACTGCCATCTAAATATAAAAGAT
TAAACTGCAAAGTCAAGTCCAACAGATTATTTTGGGACATTTTTGTATTAAGGGTTGAGT
AACATCATTTGGCTCTCTTTACCAGGTAGGGAATAGGGTTAGTGTTTTAAGACACCTCTG
TTTTCTGATGTTGCCTTAACATTCTGCAATTGTAGCAATTAAAAATTGTCTCCACACACA
TCTTGAGCTAACATTTCATATGATATGTTTCTAAGCTTTGAAACCTTTTACTTAATAGCC
AGGTGACCATTAGGTCTGGAAGTGTGAAGCCGCTTAGTGGAGTTAATTCTCAACACCCTG
ACTGGGAAAGTTCTGAGAGAAATATGCTATGCTTTATCTGGAAGAAAGAGAAAATCTTGA
ATTAAAAACAAAAAAATTAGCTGACTTGGTAATGAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               TSN_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               TSN_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               343-834, gnl|bosTau2|chr8 (11133969-11134460)
               

               
               343-834, gnl|Hg17|chr2 (122232571-122239201)
               

               
               343-834, gnl|Mm7|chr1 (118165840-118161295)
               


               
               863-1036, gnl|bosTau2|chr8 (11134528-11134707)
               

               
               863-1036, gnl|Hg17|chr2 (122239291-122239469)
               

               
               863-1036, gnl|Mm7|chr1 (118161210-118161009)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               343-834, gnl|bosTau2|chr8 (11133969-11134460)
               

               
               343-834, gnl|Hg17|chr2 (122232571-122239201)
               

               
               343-834, gnl|Mm7|chr1 (118165840-118161295)
               


               
               863-1036, gnl|bosTau2|chr8 (11134528-11134707)
               

               
               863-1036, gnl|Hg17|chr2 (122239291-122239469)
               

               
               863-1036, gnl|Mm7|chr1 (118161210-118161009)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               fbs (0.350693)
               

               
               cbl (0.344392)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               cbl (0.344392)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	343-834, gnl\|bosTau2\|chr8 (11133969-11134460)
	343-834, gnl\|Hg17\|chr2 (122232571-122239201)
	343-834, gnl\|Mm7\|chr1 (118165840-118161295)

	863-1036, gnl\|bosTau2\|chr8 (11134528-11134707)
	863-1036, gnl\|Hg17\|chr2 (122239291-122239469)
	863-1036, gnl\|Mm7\|chr1 (118161210-118161009)

	fbs (0.350693)
	cbl (0.344392)
	mgp (0.230681)
	mas (0.210305)
	hea (0.204499)
	ldo (0.194005)
	nco (0.161734)
	isp (0.150376)
	fat (0.147427)
	lin (0.145603)
	spl (0.143184)
	ret (0.128733)
	ecc (0.115035)
	cty (0.10408)