Non-Coding RNA Search

Ss1.1-Lng1-LNG010010A08.5

Sequence:


               
               TCACGTACTCATAAAGTGCTGGTGGGAAATTCACAACTGGATGTCGGATATCAGTAATTA
GCAGGACAATGTCAGACATCTCTAACACTCGCCACAGCTGCCTCCATGTCTCCAGATTGT
GCTCAAAGTAACTGAGTTTCTCAGAGGTATAAGCCCCATGAATCTTCCCAAGATACTCCT
GGAAGCTCCGTTCCTCCTGGCTCATCAGTTGCTCCTTGGACATTTCATAGTTCCAAGGAG
GACGTCGGGGAAAGTCCAGAACAGACCCAGGCTGATAGACTTCCTGGATGTCCAGCTCCA
GCAGCTCAGCACTCACGGGCTGCAGCACTTGCTCCCGGGCCGCTCTCTTTCTCCTCTCCA
CCTCCTCTCGGCTGTCTCGCTCAAAATGCAGCCGATACCGATTTGGGTCATAGCCACGCG
GGCCCAGCCCCTGGGAAGGCTGCTGGTTGAGCCTGCGGATGTGATGGGTCACAGATTCCC
CGTCCGAGGTGTCAGTCTGCTCCTCCCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAAC
TGGATCGCAGCCCATCTTGAAGCCCTCGCTTCCGCTCCCGCTTGTCCTGCAACTGCTTCT
TCTTCTGCTTCACGCTGAAAGGCTTCTTCCTCGGCATGGCCCGGACCAGTCACCTGGCCC
GCCCTCCGCCGAGCTCCAGCCGCTTCAACTGACTCCCCCCGGGGCAGCCCCGGTCGCAGG
GGCCCGGGACCCTGGAGGGGGCGGGGCTGGAAGGTGACGTCAGCGGGCGGGCCTGGCCGA
TGCGCCCCCGCGGCCGGGGTGGAAGACGACCAGGGGAAAATACAGTCACTTTCCACTGGG
AGCGAGGCAAGAGAATGATGAGAGGTGGGCTACCAGCATGTAAGAGCCAGTGGCACCGAC
AGGGCTCAGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACGTACTCATAAAGTGCTGGTGGGAAATTCACAACTGGATGTCGGATATCAGTAATTA
GCAGGACAATGTCAGACATCTCTAACACTCGCCACAGCTGCCTCCATGTCTCCAGATTGT
GCTCAAAGTAACTGAGTTTCTCAGAGGTATAAGCCCCATGAATCTTCCCAAGATACTCCT
GGAAGCTCCGTTCCTCCTGGCTCATCAGTTGCTCCTTGGACATTTCATAGTTCCAAGGAG
GACGTCGGGGAAAGTCCAGAACAGACCCAGGCTGATAGACTTCCTGGATGTCCAGCTCCA
GCAGCTCAGCACTCACGGGCTGCAGCACTTGCTCCCGGGCCGCTCTCTTTCTCCTCTCCA
CCTCCTCTCGGCTGTCTCGCTCAAAATGCAGCCGATACCGATTTGGGTCATAGCCACGCG
GGCCCAGCCCCTGGGAAGGCTGCTGGTTGAGCCTGCGGATGTGATGGGTCACAGATTCCC
CGTCCGAGGTGTCAGTCTGCTCCTCCCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAAC
TGGATCGCAGCCCATCTTGAAGCCCTCGCTTCCGCTCCCGCTTGTCCTGCAACTGCTTCT
TCTTCTGCTTCACGCTGAAAGGCTTCTTCCTCGGCATGGCCCGGACCAGTCACCTGGCCC
GCCCTCCGCCGAGCTCCAGCCGCTTCAACTGACTCCCCCCGGGGCAGCCCCGGTCGCAGG
GGCCCGGGACCCTGGAGGGGGCGGGGCTGGAAGGTGACGTCAGCGGGCGGGCCTGGCCGA
TGCGCCCCCGCGGCCGGGGTGGAAGACGACCAGGGGAAAATACAGTCACTTTCCACTGGG
AGCGAGGCAAGAGAATGATGAGAGGTGGGCTACCAGCATGTAAGAGCCAGTGGCACCGAC
AGGGCTCAGCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55626146|ref|XP_518331.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55626146|ref|XP_518331.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               160-265, + strand, RNAz p=0.702556
               

               
               564-721, - strand, RNAz p=0.968108

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-265, + strand, RNAz p=0.702556
               

               
               564-721, - strand, RNAz p=0.968108

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC018366, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC018366, -

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               110-265, gnl|bosTau2|chr23 (20924255-20924100)
               

               
               110-265, gnl|canFam2|chr12 (3381564-3381746)
               

               
               110-265, gnl|danRer3|chr16 (21812685-21812865)
               

               
               110-265, gnl|echTel1|scaffold_322716 (47584-47410)
               

               
               110-265, gnl|fr1|chrUn (296855415-296855571)
               

               
               110-265, gnl|hg17|chr6 (30630506-30630690)
               

               
               110-265, gnl|Hg17|chr6 (30630520-30630675)
               

               
               110-265, gnl|loxAfr1|scaffold_102605 (8453-8276)
               

               
               110-265, gnl|mm7|chr17 (34085514-34085332)
               

               
               110-265, gnl|Mm7|chr17 (34085500-34085345)
               

               
               110-265, gnl|monDom2|scaffold_42 (18742890-18742665)
               

               
               110-265, gnl|oryCun1|scaffold_213280 (84045-83863)
               

               
               110-265, gnl|panTro1|chr5 (31082468-31082652)
               

               
               110-265, gnl|rheMac2|chr4 (30136053-30136237)
               

               
               110-265, gnl|rn3|chr20 (2939599-2939772)
               

               
               110-265, gnl|tetNig1|chr8 (9207989-9207831)
               

               
               110-265, gnl|xenTro1|scaffold_547 (685909-686104)
               


               
               564-910, gnl|bosTau2|chr23 (20922862-20922519)
               

               
               564-910, gnl|Hg17|chr6 (30631886-30632232)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               110-265, gnl|bosTau2|chr23 (20924255-20924100)
               

               
               110-265, gnl|canFam2|chr12 (3381564-3381746)
               

               
               110-265, gnl|danRer3|chr16 (21812685-21812865)
               

               
               110-265, gnl|echTel1|scaffold_322716 (47584-47410)
               

               
               110-265, gnl|fr1|chrUn (296855415-296855571)
               

               
               110-265, gnl|hg17|chr6 (30630506-30630690)
               

               
               110-265, gnl|Hg17|chr6 (30630520-30630675)
               

               
               110-265, gnl|loxAfr1|scaffold_102605 (8453-8276)
               

               
               110-265, gnl|mm7|chr17 (34085514-34085332)
               

               
               110-265, gnl|Mm7|chr17 (34085500-34085345)
               

               
               110-265, gnl|monDom2|scaffold_42 (18742890-18742665)
               

               
               110-265, gnl|oryCun1|scaffold_213280 (84045-83863)
               

               
               110-265, gnl|panTro1|chr5 (31082468-31082652)
               

               
               110-265, gnl|rheMac2|chr4 (30136053-30136237)
               

               
               110-265, gnl|rn3|chr20 (2939599-2939772)
               

               
               110-265, gnl|tetNig1|chr8 (9207989-9207831)
               

               
               110-265, gnl|xenTro1|scaffold_547 (685909-686104)
               


               
               564-910, gnl|bosTau2|chr23 (20922862-20922519)
               

               
               564-910, gnl|Hg17|chr6 (30631886-30632232)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	160-265, + strand, RNAz p=0.702556
	564-721, - strand, RNAz p=0.968108

	110-265, gnl\|bosTau2\|chr23 (20924255-20924100)
	110-265, gnl\|canFam2\|chr12 (3381564-3381746)
	110-265, gnl\|danRer3\|chr16 (21812685-21812865)
	110-265, gnl\|echTel1\|scaffold_322716 (47584-47410)
	110-265, gnl\|fr1\|chrUn (296855415-296855571)
	110-265, gnl\|hg17\|chr6 (30630506-30630690)
	110-265, gnl\|Hg17\|chr6 (30630520-30630675)
	110-265, gnl\|loxAfr1\|scaffold_102605 (8453-8276)
	110-265, gnl\|mm7\|chr17 (34085514-34085332)
	110-265, gnl\|Mm7\|chr17 (34085500-34085345)
	110-265, gnl\|monDom2\|scaffold_42 (18742890-18742665)
	110-265, gnl\|oryCun1\|scaffold_213280 (84045-83863)
	110-265, gnl\|panTro1\|chr5 (31082468-31082652)
	110-265, gnl\|rheMac2\|chr4 (30136053-30136237)
	110-265, gnl\|rn3\|chr20 (2939599-2939772)
	110-265, gnl\|tetNig1\|chr8 (9207989-9207831)
	110-265, gnl\|xenTro1\|scaffold_547 (685909-686104)

	564-910, gnl\|bosTau2\|chr23 (20922862-20922519)
	564-910, gnl\|Hg17\|chr6 (30631886-30632232)