Non-Coding RNA Search

Ss1.1-Lng1-LNG010010D08.5.5

Sequence:


               
               TCCTGGCGATCAGCACCAAGAATCCCCTGCAGTGGCAGGCCATCTCCCTGACGGTCATTG
AGAAGGTCCAGATTGCAGCCATAGTTCTGGGCTCTCTCTTCCTCGTTGCCAGCATCTCCT
GGCTCATCTGGTCCTCACTCAGCCCTTCAGCCAAGTGGCAACGGCAAGATCTGCTCTTTC
AGATCTGCTACGGCATGTATGGCTTCATGGATGTCGTCTGCATAGGCCTCATCGTCCATG
AAGGCTCCTCTGTCTACCGTATCTTCAAGCGCTGGCAGGCAGTGAACCAGCAGTGGAAGG
TCCTGAATTACGATAAGACCAAGGACATAGGAGGAGATGCAGGGGGAGGGACGGCAGGGA
AGCCGGGCCCCAGGACCTCACGGACGGGCCCCCCCTCTGGGGCCACTAGCCGCCCTCCAG
CTACCCAGCGCATGCGGACGCTCTTGCCTCAGCGCTGTGGTTACACAATCCTGCATCTCC
TTGGACAGCTGCGGCCACCAGATGCCCGTTCCAGTTCTCATTCTGGCCGTGAGGTTGTCA
TGAGGGTCACCACGGTCTGAACTGAACCCCAGGAGCGGGGATCTTGAGTCAATGCGTCGG
CCAGAGATAAGCTGTCATGGCTGCTGGAGGTACTACCTGGACAAGGTGTTTGGGGCACAC
TGCCCTCACCACTGAGGATCTCTGTGGGCAGCCTCAAGCTGGAGACATTGTCTGGCCTCT
ACTGCCCACTGGGTAGAGACACCTGGATGACATTCCAGCCCCACTCAAGCTCCTCACACT
CATCCTGGTGCCAGTGGGCAGGTGGGAAGAACATCTTTTCTTCCCTAGAGAACCGTCCTT
ACCTCAGCTCCTAGGGCCTCCAGCCCCCCAGCTCCTCCACGGTGACTTGGTGAAGGGGGA
CCAATGCCAGAAGAAAGGGGCTGTAGACCCCCCCCATTCCCCACCCTATGGCCACAGGGC
AGCTGGCAATAAGACTAGTATACATTGACCTCCCGTTCCCTGCATGAGGGCGGGGGTACT
TCCCCCTGCTCCACCCCCCATTGCATGGGGGGAGGGCATAAAGAATCATTTATATGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTGGCGATCAGCACCAAGAATCCCCTGCAGTGGCAGGCCATCTCCCTGACGGTCATTG
AGAAGGTCCAGATTGCAGCCATAGTTCTGGGCTCTCTCTTCCTCGTTGCCAGCATCTCCT
GGCTCATCTGGTCCTCACTCAGCCCTTCAGCCAAGTGGCAACGGCAAGATCTGCTCTTTC
AGATCTGCTACGGCATGTATGGCTTCATGGATGTCGTCTGCATAGGCCTCATCGTCCATG
AAGGCTCCTCTGTCTACCGTATCTTCAAGCGCTGGCAGGCAGTGAACCAGCAGTGGAAGG
TCCTGAATTACGATAAGACCAAGGACATAGGAGGAGATGCAGGGGGAGGGACGGCAGGGA
AGCCGGGCCCCAGGACCTCACGGACGGGCCCCCCCTCTGGGGCCACTAGCCGCCCTCCAG
CTACCCAGCGCATGCGGACGCTCTTGCCTCAGCGCTGTGGTTACACAATCCTGCATCTCC
TTGGACAGCTGCGGCCACCAGATGCCCGTTCCAGTTCTCATTCTGGCCGTGAGGTTGTCA
TGAGGGTCACCACGGTCTGAACTGAACCCCAGGAGCGGGGATCTTGAGTCAATGCGTCGG
CCAGAGATAAGCTGTCATGGCTGCTGGAGGTACTACCTGGACAAGGTGTTTGGGGCACAC
TGCCCTCACCACTGAGGATCTCTGTGGGCAGCCTCAAGCTGGAGACATTGTCTGGCCTCT
ACTGCCCACTGGGTAGAGACACCTGGATGACATTCCAGCCCCACTCAAGCTCCTCACACT
CATCCTGGTGCCAGTGGGCAGGTGGGAAGAACATCTTTTCTTCCCTAGAGAACCGTCCTT
ACCTCAGCTCCTAGGGCCTCCAGCCCCCCAGCTCCTCCACGGTGACTTGGTGAAGGGGGA
CCAATGCCAGAAGAAAGGGGCTGTAGACCCCCCCCATTCCCCACCCTATGGCCACAGGGC
AGCTGGCAATAAGACTAGTATACATTGACCTCCCGTTCCCTGCATGAGGGCGGGGGTACT
TCCCCCTGCTCCACCCCCCATTGCATGGGGGGAGGGCATAAAGAATCATTTATATGCAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8N9T1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N9T1_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               651-803, - strand, RNAz p=0.999015
               

               
               882-1080, - strand, RNAz p=0.938374

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               651-803, - strand, RNAz p=0.999015
               

               
               882-1080, - strand, RNAz p=0.938374

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               31-226, gnl|bosTau2|chr20 (33069501-33069696)
               

               
               31-226, gnl|Hg17|chr5 (16144192-16143997)
               

               
               31-226, gnl|Mm7|chr15 (26490794-26490989)
               


               
               612-1080, gnl|bosTau2|chr6 (52465891-52465437)
               

               
               612-1080, gnl|Hg17|chr12 (56438999-56439466)
               

               
               612-1080, gnl|Mm7|chr10 (126553989-126553529)
               


               
               907-1068, gnl|bosTau2|chr11 (34580214-34580046)
               

               
               907-1068, gnl|Hg17|chr12 (56439300-56439456)
               

               
               907-1068, gnl|Mm7|chr10 (126553698-126553538)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-226, gnl|bosTau2|chr20 (33069501-33069696)
               

               
               31-226, gnl|Hg17|chr5 (16144192-16143997)
               

               
               31-226, gnl|Mm7|chr15 (26490794-26490989)
               


               
               612-1080, gnl|bosTau2|chr6 (52465891-52465437)
               

               
               612-1080, gnl|Hg17|chr12 (56438999-56439466)
               

               
               612-1080, gnl|Mm7|chr10 (126553989-126553529)
               


               
               907-1068, gnl|bosTau2|chr11 (34580214-34580046)
               

               
               907-1068, gnl|Hg17|chr12 (56439300-56439456)
               

               
               907-1068, gnl|Mm7|chr10 (126553698-126553538)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ecc (0.23007)
               

               
               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               ebs (0.118301)

	651-803, - strand, RNAz p=0.999015
	882-1080, - strand, RNAz p=0.938374

	31-226, gnl\|bosTau2\|chr20 (33069501-33069696)
	31-226, gnl\|Hg17\|chr5 (16144192-16143997)
	31-226, gnl\|Mm7\|chr15 (26490794-26490989)

	612-1080, gnl\|bosTau2\|chr6 (52465891-52465437)
	612-1080, gnl\|Hg17\|chr12 (56438999-56439466)
	612-1080, gnl\|Mm7\|chr10 (126553989-126553529)

	907-1068, gnl\|bosTau2\|chr11 (34580214-34580046)
	907-1068, gnl\|Hg17\|chr12 (56439300-56439456)
	907-1068, gnl\|Mm7\|chr10 (126553698-126553538)