Non-Coding RNA Search

Ss1.1-Lng1-LNG010010D10.5

Sequence:


               
               TGAGAACAACCATGATTTCAATGCTCTGATTTTACTGCATTTAAAAAACTCTGATTTTAC
TGCAGAATAGCTCATCTTGGCTCCATTAATCTTGGCATGTTTGAGTGAAAAATCTTTAAT
CATATGAAATATAGATCATACTGGACAAGTTTGCTTTGAAGCTTGTCCTCTGAAACGTAA
CTTTTGAATGGCTTTGCAGCTTTGCTGTTGTTGATTGAGGTTATTTTAGACTTTGCTTTT
TATACAGAGGGACAAGGGAGTTACGTGAGACGTAGCAGAAAGGCTTGTCCCACTGTAAAC
TTGTACCTCTTTTCAAGATGGCACCCAAAGGACTGGCTCTTGGGGCACTTCTGTTATTGG
ATGGTCAGATATCTACTTAATGTGTGGCTGATCACAGTAAAATTTATCAGAAAGGGTGGA
TTTTGACCACTTTTTTCCCTTTCTAATTTTGATCCTTTTGAGGCACTGGAGCTCTTTTGC
TTTTCCAAATGTGGAACAAAAAAGTCAGTTTTAACAGCTCTGTTTAAATAATCCAAAGAA
TAAATTCACCTTTATATGTGTGTCGGGTCCTTGGTGGCGCGTTCGGCACCATCATGTCCC
TGTGAGAGGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGAACAACCATGATTTCAATGCTCTGATTTTACTGCATTTAAAAAACTCTGATTTTAC
TGCAGAATAGCTCATCTTGGCTCCATTAATCTTGGCATGTTTGAGTGAAAAATCTTTAAT
CATATGAAATATAGATCATACTGGACAAGTTTGCTTTGAAGCTTGTCCTCTGAAACGTAA
CTTTTGAATGGCTTTGCAGCTTTGCTGTTGTTGATTGAGGTTATTTTAGACTTTGCTTTT
TATACAGAGGGACAAGGGAGTTACGTGAGACGTAGCAGAAAGGCTTGTCCCACTGTAAAC
TTGTACCTCTTTTCAAGATGGCACCCAAAGGACTGGCTCTTGGGGCACTTCTGTTATTGG
ATGGTCAGATATCTACTTAATGTGTGGCTGATCACAGTAAAATTTATCAGAAAGGGTGGA
TTTTGACCACTTTTTTCCCTTTCTAATTTTGATCCTTTTGAGGCACTGGAGCTCTTTTGC
TTTTCCAAATGTGGAACAAAAAAGTCAGTTTTAACAGCTCTGTTTAAATAATCCAAAGAA
TAAATTCACCTTTATATGTGTGTCGGGTCCTTGGTGGCGCGTTCGGCACCATCATGTCCC
TGTGAGAGGGTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               352-461, - strand, RNAz p=0.869215

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               352-461, - strand, RNAz p=0.869215

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-612, gnl|bosTau2|chr25 (3960575-3959963)
               

               
               1-612, gnl|Hg17|chr16 (3868311-3867762)
               

               
               1-612, gnl|Mm7|chr16 (3883452-3882778)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-612, gnl|bosTau2|chr25 (3960575-3959963)
               

               
               1-612, gnl|Hg17|chr16 (3868311-3867762)
               

               
               1-612, gnl|Mm7|chr16 (3883452-3882778)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               clu (0.119646)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	1-612, gnl\|bosTau2\|chr25 (3960575-3959963)
	1-612, gnl\|Hg17\|chr16 (3868311-3867762)
	1-612, gnl\|Mm7\|chr16 (3883452-3882778)