Ss1.1-Lng1-LNG010010H09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTGCAACTTCAGCGTCTCAGCGTTTTGGTTTGCAGCTCCTCCAGTAAAAGGACCCGAT TCCCTAACAGCAGCAGCCAAGCCGTTAACCTACAGACCCCTTAGTGGAGCTCCTTCAATA GGTCGCCCTCAGCTTATAAAGAGAAGAGTCAGTTTCCTGAGCAGCCAACGCAGGAGCCCG AGCGGAACCGGGCTCGCAGAGCACCTGTCCGAGGCTGCAGCATCCGCGCCAACTTCCCAT GGCATCTGGAGCCACCACGATGGACCCCATCTGTCTGGTAAAGAACCAGAACAATCATCT GACAGTAAATCCCAAAGCTCTGAAGATTCTTGGCGAGATATGTCAGCCTGTGGTGGTGGT GACCATTGCAGGGCTGTATCGGACAGGAAAATCCTACCTGATGAACCGCCTGGCAGGACA GAACCATGGTTTCCGTCTGGGCTCTACAGTGCGATCTGAAACCAAGGGCATCTGGATGTG GTGTGTCCCCCACCCCTCCAAGCCAGACCACATCCTGGTCCTTCTGGACACCGAGGGCCT GGGTGATGTGGAGAAGGGCGACTCCAAGAACGACTCGTGGATCTTTGCCCTGGCCGTGCT TCTGAGCAGCGTCTTCGTCTACAACAGCATGAACACCATCAACCACCAGGCCCTGGAGCA GCTGCACTACGTGACTGAACTGACAAAACTCATCAGGACAACGTCCTCTGCCATCTCTGG TGAAGCAGAGGACTCAGCCAAGTTCGTGAGTTTCTTCCCAGACTTTGTTTGGACTGTTCG GGACTTCATGCTGGAGCTAGAGTTAGATGGATACCCCATCACCGAAGACGAGTACCTGGA GAATGCCTTGAAGTTGATTCCAGGCTGGAATCCCAATATCCAAAATTCCAACATGCCCAG AGAGTGTATCAGGAAGTTTTTTCCGAAACGGAAGTGCTTTGTCTTTGACCGGCCTACAAA CAACAGACAGCAGTTGCTCCATATTGAAGAGCTGCCAGACGACCAACTGGATAGGAATTT CCTAGAGCAGTCAAAGAATTTCTGTTCTTACATCTTCGACCACGCAAAGACCAAGACCCT AAGTGACGGAATCACTGTCACTGGGGGAGGGCTGGCAGCTCTGGTGGAGACATACCTAGA AGCCATCAACAGTGGAGAAGTTCCTTGTTTGGAGAACGCAGTGGTAACTCTGGCCCAACG CGAGAACGCAGCGGCCGTGCAGAAGGCAGCCGACCTCTACAGCGATCGGATGGCCCGGCT ACTGAGCCTCCCCACAGACACGTTCCTGGAGCTGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTGCAACTTCAGCGTCTCAGCGTTTTGGTTTGCAGCTCCTCCAGTAAAAGGACCCGAT TCCCTAACAGCAGCAGCCAAGCCGTTAACCTACAGACCCCTTAGTGGAGCTCCTTCAATA GGTCGCCCTCAGCTTATAAAGAGAAGAGTCAGTTTCCTGAGCAGCCAACGCAGGAGCCCG AGCGGAACCGGGCTCGCAGAGCACCTGTCCGAGGCTGCAGCATCCGCGCCAACTTCCCAT GGCATCTGGAGCCACCACGATGGACCCCATCTGTCTGGTAAAGAACCAGAACAATCATCT GACAGTAAATCCCAAAGCTCTGAAGATTCTTGGCGAGATATGTCAGCCTGTGGTGGTGGT GACCATTGCAGGGCTGTATCGGACAGGAAAATCCTACCTGATGAACCGCCTGGCAGGACA GAACCATGGTTTCCGTCTGGGCTCTACAGTGCGATCTGAAACCAAGGGCATCTGGATGTG GTGTGTCCCCCACCCCTCCAAGCCAGACCACATCCTGGTCCTTCTGGACACCGAGGGCCT GGGTGATGTGGAGAAGGGCGACTCCAAGAACGACTCGTGGATCTTTGCCCTGGCCGTGCT TCTGAGCAGCGTCTTCGTCTACAACAGCATGAACACCATCAACCACCAGGCCCTGGAGCA GCTGCACTACGTGACTGAACTGACAAAACTCATCAGGACAACGTCCTCTGCCATCTCTGG TGAAGCAGAGGACTCAGCCAAGTTCGTGAGTTTCTTCCCAGACTTTGTTTGGACTGTTCG GGACTTCATGCTGGAGCTAGAGTTAGATGGATACCCCATCACCGAAGACGAGTACCTGGA GAATGCCTTGAAGTTGATTCCAGGCTGGAATCCCAATATCCAAAATTCCAACATGCCCAG AGAGTGTATCAGGAAGTTTTTTCCGAAACGGAAGTGCTTTGTCTTTGACCGGCCTACAAA CAACAGACAGCAGTTGCTCCATATTGAAGAGCTGCCAGACGACCAACTGGATAGGAATTT CCTAGAGCAGTCAAAGAATTTCTGTTCTTACATCTTCGACCACGCAAAGACCAAGACCCT AAGTGACGGAATCACTGTCACTGGGGGAGGGCTGGCAGCTCTGGTGGAGACATACCTAGA AGCCATCAACAGTGGAGAAGTTCCTTGTTTGGAGAACGCAGTGGTAACTCTGGCCCAACG CGAGAACGCAGCGGCCGTGCAGAAGGCAGCCGACCTCTACAGCGATCGGATGGCCCGGCT ACTGAGCCTCCCCACAGACACGTTCCTGGAGCTGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 269-388, + strand, RNAz p=0.652465 | |
| 667-842, + strand, RNAz p=0.933417 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 269-388, + strand, RNAz p=0.652465 | |
| 667-842, + strand, RNAz p=0.933417 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 230-404, gnl|bosTau2|chr11 (47383437-47383611) | |
| 230-404, gnl|Hg17|chr1 (89375011-89374838) | |
| 230-404, gnl|Mm7|chr3 (142454676-142454850) | |
| 428-557, gnl|bosTau2|chr3 (40035476-40035605) | |
| 428-557, gnl|Hg17|chr1 (89373129-89373000) | |
| 428-557, gnl|Mm7|chr3 (142457044-142457173) | |
| 667-864, gnl|bosTau2|chr3 (40038357-40038554) | |
| 667-864, gnl|canFam2|chr6 (62392107-62391914) | |
| 667-864, gnl|danRer3|chr2 (36942021-36941812) | |
| 667-864, gnl|dasNov1|scaffold_41688 (5911-6120) | |
| 667-864, gnl|echTel1|scaffold_208815 (10118-9912) | |
| 667-864, gnl|hg17|chr1 (89370601-89370810) | |
| 667-864, gnl|Hg17|chr1 (89370804-89370607) | |
| 667-864, gnl|loxAfr1|scaffold_158 (51312-51522) | |
| 667-864, gnl|mm7|chr3 (142431866-142431657) | |
| 667-864, gnl|Mm7|chr3 (142458186-142458383) | |
| 667-864, gnl|monDom2|scaffold_87 (4774408-4774194) | |
| 667-864, gnl|oryCun1|scaffold_175500 (51687-51478) | |
| 667-864, gnl|panTro1|chr1 (88173034-88173243) | |
| 667-864, gnl|rheMac2|chr1 (91987027-91987236) | |
| 667-864, gnl|rn3|chr2 (240461060-240460851) | |
| 667-864, gnl|xenTro1|scaffold_496 (19082-18864) | |
| 871-1105, gnl|bosTau2|chr3 (40994736-40994502) | |
| 871-1105, gnl|Hg17|chr1 (89369203-89368969) | |
| 871-1105, gnl|Mm7|chr3 (142459292-142459526) | |
| 1108-1296, gnl|bosTau2|chr3 (40993443-40993255) | |
| 1108-1296, gnl|Hg17|chr1 (89368024-89367836) | |
| 1108-1296, gnl|Mm7|chr3 (142460484-142460672) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 230-404, gnl|bosTau2|chr11 (47383437-47383611) | |
| 230-404, gnl|Hg17|chr1 (89375011-89374838) | |
| 230-404, gnl|Mm7|chr3 (142454676-142454850) | |
| 428-557, gnl|bosTau2|chr3 (40035476-40035605) | |
| 428-557, gnl|Hg17|chr1 (89373129-89373000) | |
| 428-557, gnl|Mm7|chr3 (142457044-142457173) | |
| 667-864, gnl|bosTau2|chr3 (40038357-40038554) | |
| 667-864, gnl|canFam2|chr6 (62392107-62391914) | |
| 667-864, gnl|danRer3|chr2 (36942021-36941812) | |
| 667-864, gnl|dasNov1|scaffold_41688 (5911-6120) | |
| 667-864, gnl|echTel1|scaffold_208815 (10118-9912) | |
| 667-864, gnl|hg17|chr1 (89370601-89370810) | |
| 667-864, gnl|Hg17|chr1 (89370804-89370607) | |
| 667-864, gnl|loxAfr1|scaffold_158 (51312-51522) | |
| 667-864, gnl|mm7|chr3 (142431866-142431657) | |
| 667-864, gnl|Mm7|chr3 (142458186-142458383) | |
| 667-864, gnl|monDom2|scaffold_87 (4774408-4774194) | |
| 667-864, gnl|oryCun1|scaffold_175500 (51687-51478) | |
| 667-864, gnl|panTro1|chr1 (88173034-88173243) | |
| 667-864, gnl|rheMac2|chr1 (91987027-91987236) | |
| 667-864, gnl|rn3|chr2 (240461060-240460851) | |
| 667-864, gnl|xenTro1|scaffold_496 (19082-18864) | |
| 871-1105, gnl|bosTau2|chr3 (40994736-40994502) | |
| 871-1105, gnl|Hg17|chr1 (89369203-89368969) | |
| 871-1105, gnl|Mm7|chr3 (142459292-142459526) | |
| 1108-1296, gnl|bosTau2|chr3 (40993443-40993255) | |
| 1108-1296, gnl|Hg17|chr1 (89368024-89367836) | |
| 1108-1296, gnl|Mm7|chr3 (142460484-142460672) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.17584) | |
| cbl (0.114797) |