Non-Coding RNA Search

Ss1.1-Lng1-LNG010011A07.5

Sequence:


               
               CTCGGGCCCCAGCTTGGATGGTGCCGGGTGGAACAGCTTCCAGTCATCCGATGGCACTGA
ACCCCCGGCCCCGACTCCAGCCCCCAGCACGGAGAGTCAGCCCCCCACGCGGACGTCCCT
GCCCACGAGCAGTGGTCTGGATGACCTGGACCTCCTGGGGAAGACGCTCCTGCAACAGTC
GCTGCCCCCTGAGTCCCAGCAAGTGCGGTGGGAGAAGCAGCAGCCAGCCCCCCGGCTCAC
GCTCCGGGACTTGCAGAATAAAAGCAGCTGCAGCTCGCTCAGCTCCGGTGCCACCAGCCT
TCTCCACACCGTGTCCCCCGAGCCCCCCGGGCCTCCACAACAGCCCACACCGACGGAGCT
GTCGCTGGCCAATGTCACTGTGCCTCTGGAGTCCATCAAACCCAGCAGCATCTTGCCAGT
GACCGTGTACGACCAGCATGGCTTCCGGGTCCTCTTCCACTTCGCCCGGGACCCGCTGCC
CGGGCGCTCCGACGTGCTGGTGGTGGTGGTTTCCATGCTGAGCACCGCCCCCCACCCCAT
CCGCAACATCGTTTTCCAGTCAGCTGTCCCCAAGGTCATGAAAGTGAAGCTGCAGCCGCC
CTCGGGCACAGAGCTACCGGCCTTTAACCCCATCGTCCACCCCTCCGCCATCACCCAGGT
CCTGCTCCTGGCCAACCCACAGAAGGAGAAGGTTCGCCTCCGCTACAAGCTCCTGTTCAC
CATGGGCGACCAGACCTACAACGAGATGGGGGACGTGGACCAGTTCCCCCCACCAGAGAC
CTGGGGGAGCCTCTAGAACAGAGAGGGGCTGGGGAGAGGAGGGGCACTGGGACCGGCCAC
CCTGGAGCCTGGGTGGGAGCCGGCGGTGGCCTAGGACACCCTCGGTTCCCAGGGCCACAT
ACCCCTGGGTCTGGTGCTTCTCTCCTCACCCCTGCGGCCCCCTCGTCTCTTGCCCCCTCC
CCTGCTGCGCCAAACCCAGCAGGAGGCTGGGCCTGGGTTTGCACTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGGGCCCCAGCTTGGATGGTGCCGGGTGGAACAGCTTCCAGTCATCCGATGGCACTGA
ACCCCCGGCCCCGACTCCAGCCCCCAGCACGGAGAGTCAGCCCCCCACGCGGACGTCCCT
GCCCACGAGCAGTGGTCTGGATGACCTGGACCTCCTGGGGAAGACGCTCCTGCAACAGTC
GCTGCCCCCTGAGTCCCAGCAAGTGCGGTGGGAGAAGCAGCAGCCAGCCCCCCGGCTCAC
GCTCCGGGACTTGCAGAATAAAAGCAGCTGCAGCTCGCTCAGCTCCGGTGCCACCAGCCT
TCTCCACACCGTGTCCCCCGAGCCCCCCGGGCCTCCACAACAGCCCACACCGACGGAGCT
GTCGCTGGCCAATGTCACTGTGCCTCTGGAGTCCATCAAACCCAGCAGCATCTTGCCAGT
GACCGTGTACGACCAGCATGGCTTCCGGGTCCTCTTCCACTTCGCCCGGGACCCGCTGCC
CGGGCGCTCCGACGTGCTGGTGGTGGTGGTTTCCATGCTGAGCACCGCCCCCCACCCCAT
CCGCAACATCGTTTTCCAGTCAGCTGTCCCCAAGGTCATGAAAGTGAAGCTGCAGCCGCC
CTCGGGCACAGAGCTACCGGCCTTTAACCCCATCGTCCACCCCTCCGCCATCACCCAGGT
CCTGCTCCTGGCCAACCCACAGAAGGAGAAGGTTCGCCTCCGCTACAAGCTCCTGTTCAC
CATGGGCGACCAGACCTACAACGAGATGGGGGACGTGGACCAGTTCCCCCCACCAGAGAC
CTGGGGGAGCCTCTAGAACAGAGAGGGGCTGGGGAGAGGAGGGGCACTGGGACCGGCCAC
CCTGGAGCCTGGGTGGGAGCCGGCGGTGGCCTAGGACACCCTCGGTTCCCAGGGCCACAT
ACCCCTGGGTCTGGTGCTTCTCTCCTCACCCCTGCGGCCCCCTCGTCTCTTGCCCCCTCC
CCTGCTGCGCCAAACCCAGCAGGAGGCTGGGCCTGGGTTTGCACTGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34811001|pdb|1OM9|B

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34811001|pdb|1OM9|B

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               723-959, + strand, RNAz p=0.921773

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               723-959, + strand, RNAz p=0.921773

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of CR456493, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of CR456493, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               41-211, gnl|bosTau2|chr5 (67327208-67327038)
               

               
               41-211, gnl|Hg17|chr22 (36350502-36350678)
               

               
               41-211, gnl|Mm7|chr15 (78974863-78975039)
               


               
               405-576, gnl|bosTau2|chr19 (50809913-50810084)
               

               
               405-576, gnl|Hg17|chr17 (70746759-70746588)
               

               
               405-576, gnl|Mm7|chr11 (115695530-115695359)
               


               
               684-1007, gnl|bosTau2|chr5 (67324827-67324512)
               

               
               684-1007, gnl|Hg17|chr22 (36353106-36353444)
               

               
               684-1007, gnl|Mm7|chr15 (78976684-78976949)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-211, gnl|bosTau2|chr5 (67327208-67327038)
               

               
               41-211, gnl|Hg17|chr22 (36350502-36350678)
               

               
               41-211, gnl|Mm7|chr15 (78974863-78975039)
               


               
               405-576, gnl|bosTau2|chr19 (50809913-50810084)
               

               
               405-576, gnl|Hg17|chr17 (70746759-70746588)
               

               
               405-576, gnl|Mm7|chr11 (115695530-115695359)
               


               
               684-1007, gnl|bosTau2|chr5 (67324827-67324512)
               

               
               684-1007, gnl|Hg17|chr22 (36353106-36353444)
               

               
               684-1007, gnl|Mm7|chr15 (78976684-78976949)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	41-211, gnl\|bosTau2\|chr5 (67327208-67327038)
	41-211, gnl\|Hg17\|chr22 (36350502-36350678)
	41-211, gnl\|Mm7\|chr15 (78974863-78975039)

	405-576, gnl\|bosTau2\|chr19 (50809913-50810084)
	405-576, gnl\|Hg17\|chr17 (70746759-70746588)
	405-576, gnl\|Mm7\|chr11 (115695530-115695359)

	684-1007, gnl\|bosTau2\|chr5 (67324827-67324512)
	684-1007, gnl\|Hg17\|chr22 (36353106-36353444)
	684-1007, gnl\|Mm7\|chr15 (78976684-78976949)