Ss1.1-Lng1-LNG010011A11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCTCCGGCTGCTGCCGTAGGGTCGCCTTTCCCTGACGGCTACTGCTCGGCCTCCGGCT GCTGCCGTAGGTGAAGAATGGCACTGAAACAGCTTTCCAGCAACAAGTGCTTTGGAGGAT TGCAAAAGGTTTTTGAACATGACAGTGTTGAATTGAAGTGCAAAATGAAATTTGCTATCT ACTTACCACCAAAGGCAGAAACTGGAAAATGCCCTGCACTATACTGGCTCTCTGGTTTAA CTTGCACAGAACAAAATTTTATTACAAAATCTGGTTATCATCAAGCTGCCTCAGAACACG GCCTTGTCGTCATTGCTCCAGATACCAGCCCTCGTGGCTGTAATATTAAAGGCGAAGATG AGAGCTGGGATTTTGGCACTGGGGCCGGATTTTATCTGGATGCTACTGAAGATCCTTGGA AAACTAACTACAGAATGTACTCTTATGTAACGGAGGAGCTTCCCCAACTCATAAATGCCA ATTTTCCAGTAGACCCCCAAAGGATGTCTATTTTCGGCCACTCCATGGGAGGCCATGGAG CTCTGATTTGTACTTTGAAGAATCCTGGAAAATACAAATCTGTGTCAGCATTTGCTCCAA TTTGCAACCCAGTGCTCTGTCCTTGGGGCAAAAAAGCCTTTAGTGGATATTTGGGAACAG ATGAAAGTAAATGGAAGGCTTATGATGCTACCCATCTTGTGAAGTCCTATCCAGGTTCTC AGCTGGATATACTAATTGATCAAGGAAAAGATGACCAGTTCCTTTCAGATGGACAGTTAC TACCTGATAACTTCATAGCTGCTTGTACAGAAAAGAAAATCCCTGTTGTTTTTAGATCAC AAGAGGGTTATGATCACAGCTACTACTTCATCGCAACCTTCATTACCGATCACATCAGAC ATCACGCCAAATACCTGAATGCGTGAGAAACGTCAGATAAGAGACGCCCTCCAGGGTTCT GAAACTGTAATAAACAGAGTGACAAAGAAAGAGTTTAAAACACTGGATTTCATAATGCTA TAAATGCTTCCTTCTCCAATTGAATCACCCTCTGAATAAATATATCAAACCGCAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCTCCGGCTGCTGCCGTAGGGTCGCCTTTCCCTGACGGCTACTGCTCGGCCTCCGGCT GCTGCCGTAGGTGAAGAATGGCACTGAAACAGCTTTCCAGCAACAAGTGCTTTGGAGGAT TGCAAAAGGTTTTTGAACATGACAGTGTTGAATTGAAGTGCAAAATGAAATTTGCTATCT ACTTACCACCAAAGGCAGAAACTGGAAAATGCCCTGCACTATACTGGCTCTCTGGTTTAA CTTGCACAGAACAAAATTTTATTACAAAATCTGGTTATCATCAAGCTGCCTCAGAACACG GCCTTGTCGTCATTGCTCCAGATACCAGCCCTCGTGGCTGTAATATTAAAGGCGAAGATG AGAGCTGGGATTTTGGCACTGGGGCCGGATTTTATCTGGATGCTACTGAAGATCCTTGGA AAACTAACTACAGAATGTACTCTTATGTAACGGAGGAGCTTCCCCAACTCATAAATGCCA ATTTTCCAGTAGACCCCCAAAGGATGTCTATTTTCGGCCACTCCATGGGAGGCCATGGAG CTCTGATTTGTACTTTGAAGAATCCTGGAAAATACAAATCTGTGTCAGCATTTGCTCCAA TTTGCAACCCAGTGCTCTGTCCTTGGGGCAAAAAAGCCTTTAGTGGATATTTGGGAACAG ATGAAAGTAAATGGAAGGCTTATGATGCTACCCATCTTGTGAAGTCCTATCCAGGTTCTC AGCTGGATATACTAATTGATCAAGGAAAAGATGACCAGTTCCTTTCAGATGGACAGTTAC TACCTGATAACTTCATAGCTGCTTGTACAGAAAAGAAAATCCCTGTTGTTTTTAGATCAC AAGAGGGTTATGATCACAGCTACTACTTCATCGCAACCTTCATTACCGATCACATCAGAC ATCACGCCAAATACCTGAATGCGTGAGAAACGTCAGATAAGAGACGCCCTCCAGGGTTCT GAAACTGTAATAAACAGAGTGACAAAGAAAGAGTTTAAAACACTGGATTTCATAATGCTA TAAATGCTTCCTTCTCCAATTGAATCACCCTCTGAATAAATATATCAAACCGCAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 472-579, + strand, RNAz p=0.971365 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 472-579, + strand, RNAz p=0.971365 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 73-1085, gnl|bosTau2|chr20 (31374651-31373644) | |
| 73-1085, gnl|Hg17|chr13 (46259247-46243393) | |
| 73-1085, gnl|Mm7|chr14 (3266559-3267548) | |
| 217-335, gnl|bosTau2|chr12 (7406756-7406637) | |
| 217-335, gnl|Hg17|chr13 (46256505-46256386) | |
| 217-335, gnl|Mm7|chr14 (69422842-69422961) | |
| 457-578, gnl|bosTau2|chr12 (7403230-7403109) | |
| 457-578, gnl|canFam2|chr22 (7500830-7500682) | |
| 457-578, gnl|danRer3|chr9 (20528869-20528740) | |
| 457-578, gnl|dasNov1|scaffold_5513 (38739-38886) | |
| 457-578, gnl|echTel1|scaffold_287209 (47155-47274) | |
| 457-578, gnl|galGal2|chr1 (160478482-160478617) | |
| 457-578, gnl|hg17|chr13 (46253613-46253761) | |
| 457-578, gnl|Hg17|chr13 (46253753-46253632) | |
| 457-578, gnl|loxAfr1|scaffold_763 (174416-174564) | |
| 457-578, gnl|mm7|chr14 (69425061-69424915) | |
| 457-578, gnl|Mm7|chr14 (69424921-69425042) | |
| 457-578, gnl|monDom2|scaffold_15 (60918708-60918559) | |
| 457-578, gnl|oryCun1|scaffold_211296 (72000-72148) | |
| 457-578, gnl|panTro1|chr14_random (12287459-12287607) | |
| 457-578, gnl|rheMac2|chr17 (25604119-25604267) | |
| 457-578, gnl|rn3|chr15 (55585748-55585601) | |
| 457-578, gnl|tetNig1|chrUn_random (83855760-83855631) | |
| 457-578, gnl|xenTro1|scaffold_1334 (45677-45817) | |
| 842-1084, gnl|bosTau2|chr16 (55861644-55861405) | |
| 844-1069, gnl|bosTau2|chr12 (7396000-7395772) | |
| 844-1069, gnl|Hg17|chr13 (46243634-46243396) | |
| 844-1069, gnl|Mm7|chr14 (69431347-69431548) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 73-1085, gnl|bosTau2|chr20 (31374651-31373644) | |
| 73-1085, gnl|Hg17|chr13 (46259247-46243393) | |
| 73-1085, gnl|Mm7|chr14 (3266559-3267548) | |
| 217-335, gnl|bosTau2|chr12 (7406756-7406637) | |
| 217-335, gnl|Hg17|chr13 (46256505-46256386) | |
| 217-335, gnl|Mm7|chr14 (69422842-69422961) | |
| 457-578, gnl|bosTau2|chr12 (7403230-7403109) | |
| 457-578, gnl|canFam2|chr22 (7500830-7500682) | |
| 457-578, gnl|danRer3|chr9 (20528869-20528740) | |
| 457-578, gnl|dasNov1|scaffold_5513 (38739-38886) | |
| 457-578, gnl|echTel1|scaffold_287209 (47155-47274) | |
| 457-578, gnl|galGal2|chr1 (160478482-160478617) | |
| 457-578, gnl|hg17|chr13 (46253613-46253761) | |
| 457-578, gnl|Hg17|chr13 (46253753-46253632) | |
| 457-578, gnl|loxAfr1|scaffold_763 (174416-174564) | |
| 457-578, gnl|mm7|chr14 (69425061-69424915) | |
| 457-578, gnl|Mm7|chr14 (69424921-69425042) | |
| 457-578, gnl|monDom2|scaffold_15 (60918708-60918559) | |
| 457-578, gnl|oryCun1|scaffold_211296 (72000-72148) | |
| 457-578, gnl|panTro1|chr14_random (12287459-12287607) | |
| 457-578, gnl|rheMac2|chr17 (25604119-25604267) | |
| 457-578, gnl|rn3|chr15 (55585748-55585601) | |
| 457-578, gnl|tetNig1|chrUn_random (83855760-83855631) | |
| 457-578, gnl|xenTro1|scaffold_1334 (45677-45817) | |
| 842-1084, gnl|bosTau2|chr16 (55861644-55861405) | |
| 844-1069, gnl|bosTau2|chr12 (7396000-7395772) | |
| 844-1069, gnl|Hg17|chr13 (46243634-46243396) | |
| 844-1069, gnl|Mm7|chr14 (69431347-69431548) |
| Expressed library(ies): 54 entry(ies) | More info |
| Expressed library(ies): 54 entry(ies) | Help | Less info |
| vin (1.66279) | |
| bla (1.24347) | |
| sug (0.891039) | |
| isp (0.75188) | |
| ldo (0.582016) | |
| hyp (0.571347) | |
| spc (0.566829) | |
| ssp (0.542079) | |
| nmm (0.531209) | |
| sin (0.524843) | |
| duo (0.518403) | |
| thg (0.507164) | |
| pgl (0.473934) | |
| tbr (0.462535) | |
| ece (0.45861) | |
| tes (0.415628) | |
| hea (0.408998) | |
| lyg (0.399308) | |
| ova (0.387397) | |
| fty (0.351679) | |
| jca (0.34188) | |
| fco (0.314416) | |
| lun (0.300978) | |
| ski (0.29347) | |
| spl (0.286369) | |
| lnt (0.284616) | |
| hlv (0.278513) | |
| kid (0.259471) | |
| eep (0.245128) | |
| mgp (0.230681) | |
| mas (0.210305) | |
| cty (0.20816) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| lin (0.145603) | |
| ute (0.132784) | |
| ret (0.128733) | |
| ese (0.126502) | |
| tra (0.123092) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 54 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (1.66279) | |
| bla (1.24347) | |
| sug (0.891039) | |
| isp (0.75188) | |
| ldo (0.582016) | |
| hyp (0.571347) | |
| spc (0.566829) | |
| ssp (0.542079) | |
| nmm (0.531209) | |
| sin (0.524843) | |
| duo (0.518403) | |
| thg (0.507164) | |
| pgl (0.473934) | |
| tbr (0.462535) | |
| ece (0.45861) | |
| tes (0.415628) | |
| hea (0.408998) | |
| lyg (0.399308) | |
| ova (0.387397) | |
| fty (0.351679) | |
| jca (0.34188) | |
| fco (0.314416) | |
| lun (0.300978) | |
| ski (0.29347) | |
| spl (0.286369) | |
| lnt (0.284616) | |
| hlv (0.278513) | |
| kid (0.259471) | |
| eep (0.245128) | |
| mgp (0.230681) | |
| mas (0.210305) | |
| cty (0.20816) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| lin (0.145603) | |
| ute (0.132784) | |
| ret (0.128733) | |
| ese (0.126502) | |
| tra (0.123092) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) |