Non-Coding RNA Search

Ss1.1-Lng1-LNG010011D11.5

Sequence:


               
               ACATAGGCCGTCTTCAGCCGCAGCATCGAGTCGGCCGTCTTCAGCCGCAGCATCGAGTCG
GCCTTGTTGGCCTACTGGGATTTATGTGAATTGTGATACCTGCCATTTGAGACAAAATTT
CTTGGAAAGCACTTAGCTCATCATACTGTTAAACGCCCTTGGCTAAGTGTTAAAGAAACA
ATTACCTAAATATACAGTCTTGATTATCGGCTACCAGACTGGCACCCTTTAACCATCGTT
ATTGTTACTAGCTAGACGGAATATTTCCACTAGGTATTACCTCCCAAGAGGCGTGATTAT
TTGTTGCGGCCCTGTGTTTTTATTACTCATCTGATTCTAGAAAGGTCTCCCCATTTTTGG
CTCTGGAACCTTCTCTCATGACCTCTTTCCAGAGGGAAGGCCGGGGAAAATCTTCCTCTG
ATTTTTTTTTTTTTTCCCTACGTCAGTAATTTTAAAAAATGTCTGTGGTTTTACAACACA
GGGAGGTTTCAGTGAGGAAGGAAATTCTTTCCGGGTTTGCAAACTTTCTGAAAATTATGG
AAGAGGTGTTTATGCTTTTCGACTCGGTACCTGTGTGGTCAGGGTTTTAGAAGCTTTCTG
TTCCCCCTCTGTGGCGTGCCTTGCCCACCCCAACTGGTTGCAGATGTAGCCAGAGATCTT
GCGAGCTTCTGAGCAGAAACTTTCAGCTCCTCTTAGTTGGGTTTTTATGTAAATGACAAA
TTTTCGAAGTCCTAAGGAGATGCACAGTGAAAAATCTATGCCCAAATGAGTTGGCATCTT
GAGATGAAAATATCAGCTCTGCAAATGGAAGTTTCCTCTACGCGGTGGTGGTGTGGCAGC
CAGCAGCCTTGTTCTGTGCTTCTGAGGCTTTAGTGGCCAGCCAGGGAAGGGACGAGGCTC
GCCGTATATATAGTACCAGGCGTGTGGGCGCCTTGGCGCTGATCTGAAAAAGCTTAACTT
TGGCATTTCTGGGTTTATTTTAAACCTACAACCTTTAACGCCAGACACAGAGCTTCTTTC
CCACTTAATGTAACCATACATTGATGGCTTTTAATTAGTGTTGGATCTTTTTTGGTGTTT
TGCAGCTTGGGATATATAAAAAGTCTGACTTAAATTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATAGGCCGTCTTCAGCCGCAGCATCGAGTCGGCCGTCTTCAGCCGCAGCATCGAGTCG
GCCTTGTTGGCCTACTGGGATTTATGTGAATTGTGATACCTGCCATTTGAGACAAAATTT
CTTGGAAAGCACTTAGCTCATCATACTGTTAAACGCCCTTGGCTAAGTGTTAAAGAAACA
ATTACCTAAATATACAGTCTTGATTATCGGCTACCAGACTGGCACCCTTTAACCATCGTT
ATTGTTACTAGCTAGACGGAATATTTCCACTAGGTATTACCTCCCAAGAGGCGTGATTAT
TTGTTGCGGCCCTGTGTTTTTATTACTCATCTGATTCTAGAAAGGTCTCCCCATTTTTGG
CTCTGGAACCTTCTCTCATGACCTCTTTCCAGAGGGAAGGCCGGGGAAAATCTTCCTCTG
ATTTTTTTTTTTTTTCCCTACGTCAGTAATTTTAAAAAATGTCTGTGGTTTTACAACACA
GGGAGGTTTCAGTGAGGAAGGAAATTCTTTCCGGGTTTGCAAACTTTCTGAAAATTATGG
AAGAGGTGTTTATGCTTTTCGACTCGGTACCTGTGTGGTCAGGGTTTTAGAAGCTTTCTG
TTCCCCCTCTGTGGCGTGCCTTGCCCACCCCAACTGGTTGCAGATGTAGCCAGAGATCTT
GCGAGCTTCTGAGCAGAAACTTTCAGCTCCTCTTAGTTGGGTTTTTATGTAAATGACAAA
TTTTCGAAGTCCTAAGGAGATGCACAGTGAAAAATCTATGCCCAAATGAGTTGGCATCTT
GAGATGAAAATATCAGCTCTGCAAATGGAAGTTTCCTCTACGCGGTGGTGGTGTGGCAGC
CAGCAGCCTTGTTCTGTGCTTCTGAGGCTTTAGTGGCCAGCCAGGGAAGGGACGAGGCTC
GCCGTATATATAGTACCAGGCGTGTGGGCGCCTTGGCGCTGATCTGAAAAAGCTTAACTT
TGGCATTTCTGGGTTTATTTTAAACCTACAACCTTTAACGCCAGACACAGAGCTTCTTTC
CCACTTAATGTAACCATACATTGATGGCTTTTAATTAGTGTTGGATCTTTTTTGGTGTTT
TGCAGCTTGGGATATATAAAAAGTCTGACTTAAATTAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               314-511, - strand, RNAz p=0.983223

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               314-511, - strand, RNAz p=0.983223

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               82-1128, gnl|bosTau2|chr15 (11062165-11061128)
               

               
               82-1128, gnl|Hg17|chr11 (113473426-113474478)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               82-1128, gnl|bosTau2|chr15 (11062165-11061128)
               

               
               82-1128, gnl|Hg17|chr11 (113473426-113474478)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	82-1128, gnl\|bosTau2\|chr15 (11062165-11061128)
	82-1128, gnl\|Hg17\|chr11 (113473426-113474478)