Non-Coding RNA Search

Ss1.1-Lng1-LNG010012B07.5

Sequence:


               
               AGGACCCTGGCCCCAAGATGGCGGCGCCCAGCGAAGTGGCTGCTGCTGCCTCTGGGGAGA
GCGAGGAAGGGGGCAGTGGCTTTGGATCCTGGCTAGACGGACGGTTGGAGGCGCTGGGAG
TGGACCAAGCCATTTACGGCGCCTACATCCTGGGGGTCCTGCAGGAGGAAGAGGAAGAAG
AGAAGCTGGACGCTCTGCAGGGTATCCTCTCTGCTTTTCTGGAAGAAGATTCCCTCCTGA
ACATCTGCAAGGAGATTGTGGAACGATGGTCGGAAACTCAGAATGTTACCACTAAAGTGA
AAAAAGAAGATGAGGTCCAGGCCATCGCCACCCTCATTGAGAAGCAGGCGCAGATCGTGG
TGAAGCCCAGGATGGTGTCAGAAGAGGAGAAGCAGAGGAAAGCCGCACTCCTGGCCCAGT
ATGCTGACGTGACAGACGAAGAGGAGGAAGCAGATGAGAAGGATGATTCAGGTGCCTCCA
CGATGAACCTTGGTTCTGACAAATCTCTCTTCCGAAACACCAATGTGGAAGACGTTCTCA
ATGCCCGAAAACTGGAGCGGGACTCGCTTCGGGATGAGTCCCAAAGGAAGAAGGAGCAGG
ACAAGCTGCAGAGGGAGAGGGACAAACTAGCCAAGCAGGAGCGCAAGGAAAAGGAGAAGA
AAAGGACACAAAGAGGGGAGCGAAAGCGATAACCTTGGTCCACTCTTTCTCCTCGTGGAC
TTGGTCAAAGGGAGAACTGGTTGTGCACGTGTGTATTTAAGAGAAATGAGAGAACATCGC
AAAGTGGTTTCCCAAGGCATCTCCCCTTTTGTTTACATGGTGAAGAGGAAAGTCACAAAC
ACTTCTAATTATAAAATGTGCCATGTCTCTGTGGTGTGGTAATCAGATTATTGTAGTTGA
TGTCTGTACCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGACCCTGGCCCCAAGATGGCGGCGCCCAGCGAAGTGGCTGCTGCTGCCTCTGGGGAGA
GCGAGGAAGGGGGCAGTGGCTTTGGATCCTGGCTAGACGGACGGTTGGAGGCGCTGGGAG
TGGACCAAGCCATTTACGGCGCCTACATCCTGGGGGTCCTGCAGGAGGAAGAGGAAGAAG
AGAAGCTGGACGCTCTGCAGGGTATCCTCTCTGCTTTTCTGGAAGAAGATTCCCTCCTGA
ACATCTGCAAGGAGATTGTGGAACGATGGTCGGAAACTCAGAATGTTACCACTAAAGTGA
AAAAAGAAGATGAGGTCCAGGCCATCGCCACCCTCATTGAGAAGCAGGCGCAGATCGTGG
TGAAGCCCAGGATGGTGTCAGAAGAGGAGAAGCAGAGGAAAGCCGCACTCCTGGCCCAGT
ATGCTGACGTGACAGACGAAGAGGAGGAAGCAGATGAGAAGGATGATTCAGGTGCCTCCA
CGATGAACCTTGGTTCTGACAAATCTCTCTTCCGAAACACCAATGTGGAAGACGTTCTCA
ATGCCCGAAAACTGGAGCGGGACTCGCTTCGGGATGAGTCCCAAAGGAAGAAGGAGCAGG
ACAAGCTGCAGAGGGAGAGGGACAAACTAGCCAAGCAGGAGCGCAAGGAAAAGGAGAAGA
AAAGGACACAAAGAGGGGAGCGAAAGCGATAACCTTGGTCCACTCTTTCTCCTCGTGGAC
TTGGTCAAAGGGAGAACTGGTTGTGCACGTGTGTATTTAAGAGAAATGAGAGAACATCGC
AAAGTGGTTTCCCAAGGCATCTCCCCTTTTGTTTACATGGTGAAGAGGAAAGTCACAAAC
ACTTCTAATTATAAAATGTGCCATGTCTCTGTGGTGTGGTAATCAGATTATTGTAGTTGA
TGTCTGTACCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96MW1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96MW1_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               505-623, + strand, RNAz p=0.741405
               

               
               704-815, - strand, RNAz p=0.770982

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               505-623, + strand, RNAz p=0.741405
               

               
               704-815, - strand, RNAz p=0.770982

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC047776, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC047776, +

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               1-228, gnl|bosTau2|chr19 (37598951-37599179)
               

               
               1-228, gnl|Hg17|chr17 (40122664-40122436)
               

               
               1-228, gnl|Mm7|chr11 (102806766-102806539)
               


               
               308-445, gnl|bosTau2|chr19 (37603696-37603833)
               

               
               308-445, gnl|canFam2|chr9 (22104747-22104610)
               

               
               308-445, gnl|dasNov1|scaffold_504 (122458-122323)
               

               
               308-445, gnl|echTel1|scaffold_232649 (5503-5640)
               

               
               308-445, gnl|fr1|chrUn (22893910-22893776)
               

               
               308-445, gnl|galGal2|chr27 (1662289-1662152)
               

               
               308-445, gnl|hg17|chr17 (40114898-40115035)
               

               
               308-445, gnl|Hg17|chr17 (40115034-40114897)
               

               
               308-445, gnl|mm7|chr11 (102799243-102799380)
               

               
               308-445, gnl|Mm7|chr11 (102799379-102799242)
               

               
               308-445, gnl|monDom2|scaffold_18 (41959074-41958937)
               

               
               308-445, gnl|oryCun1|scaffold_209263 (7708-7845)
               

               
               308-445, gnl|panTro1|chr19 (43322976-43323113)
               

               
               308-445, gnl|rheMac2|chr16 (54769273-54769410)
               

               
               308-445, gnl|rn3|chr10 (91820740-91820877)
               

               
               308-445, gnl|xenTro1|scaffold_316 (1216332-1216468)
               


               
               505-912, gnl|bosTau2|chr19 (37606577-37606981)
               

               
               505-912, gnl|Hg17|chr17 (40111937-40111535)
               

               
               505-912, gnl|Mm7|chr11 (102795537-102795155)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-228, gnl|bosTau2|chr19 (37598951-37599179)
               

               
               1-228, gnl|Hg17|chr17 (40122664-40122436)
               

               
               1-228, gnl|Mm7|chr11 (102806766-102806539)
               


               
               308-445, gnl|bosTau2|chr19 (37603696-37603833)
               

               
               308-445, gnl|canFam2|chr9 (22104747-22104610)
               

               
               308-445, gnl|dasNov1|scaffold_504 (122458-122323)
               

               
               308-445, gnl|echTel1|scaffold_232649 (5503-5640)
               

               
               308-445, gnl|fr1|chrUn (22893910-22893776)
               

               
               308-445, gnl|galGal2|chr27 (1662289-1662152)
               

               
               308-445, gnl|hg17|chr17 (40114898-40115035)
               

               
               308-445, gnl|Hg17|chr17 (40115034-40114897)
               

               
               308-445, gnl|mm7|chr11 (102799243-102799380)
               

               
               308-445, gnl|Mm7|chr11 (102799379-102799242)
               

               
               308-445, gnl|monDom2|scaffold_18 (41959074-41958937)
               

               
               308-445, gnl|oryCun1|scaffold_209263 (7708-7845)
               

               
               308-445, gnl|panTro1|chr19 (43322976-43323113)
               

               
               308-445, gnl|rheMac2|chr16 (54769273-54769410)
               

               
               308-445, gnl|rn3|chr10 (91820740-91820877)
               

               
               308-445, gnl|xenTro1|scaffold_316 (1216332-1216468)
               


               
               505-912, gnl|bosTau2|chr19 (37606577-37606981)
               

               
               505-912, gnl|Hg17|chr17 (40111937-40111535)
               

               
               505-912, gnl|Mm7|chr11 (102795537-102795155)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               tbr (0.308356)
               

               
               sto (0.179824)
               

               
               che (0.136314)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.308356)
               

               
               sto (0.179824)
               

               
               che (0.136314)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

	505-623, + strand, RNAz p=0.741405
	704-815, - strand, RNAz p=0.770982

	1-228, gnl\|bosTau2\|chr19 (37598951-37599179)
	1-228, gnl\|Hg17\|chr17 (40122664-40122436)
	1-228, gnl\|Mm7\|chr11 (102806766-102806539)

	308-445, gnl\|bosTau2\|chr19 (37603696-37603833)
	308-445, gnl\|canFam2\|chr9 (22104747-22104610)
	308-445, gnl\|dasNov1\|scaffold_504 (122458-122323)
	308-445, gnl\|echTel1\|scaffold_232649 (5503-5640)
	308-445, gnl\|fr1\|chrUn (22893910-22893776)
	308-445, gnl\|galGal2\|chr27 (1662289-1662152)
	308-445, gnl\|hg17\|chr17 (40114898-40115035)
	308-445, gnl\|Hg17\|chr17 (40115034-40114897)
	308-445, gnl\|mm7\|chr11 (102799243-102799380)
	308-445, gnl\|Mm7\|chr11 (102799379-102799242)
	308-445, gnl\|monDom2\|scaffold_18 (41959074-41958937)
	308-445, gnl\|oryCun1\|scaffold_209263 (7708-7845)
	308-445, gnl\|panTro1\|chr19 (43322976-43323113)
	308-445, gnl\|rheMac2\|chr16 (54769273-54769410)
	308-445, gnl\|rn3\|chr10 (91820740-91820877)
	308-445, gnl\|xenTro1\|scaffold_316 (1216332-1216468)

	505-912, gnl\|bosTau2\|chr19 (37606577-37606981)
	505-912, gnl\|Hg17\|chr17 (40111937-40111535)
	505-912, gnl\|Mm7\|chr11 (102795537-102795155)

	tbr (0.308356)
	sto (0.179824)
	che (0.136314)
	eru (0.120048)
	spc (0.113366)