Non-Coding RNA Search

Ss1.1-Lng1-LNG010012C08.5

Sequence:


               
               ATCGGCTGGAGCGGCGCAGCGGGTGAGGTCCGCGCGCCGGCGGCCAGACCATGCTGAGCG
GAGCGCGCGGTCGGCTCGCCTTAGCGCTGCGAGGGACACGCGCGCCGCCGTCCGCGGTCG
CCAGGAGGTGCCTGCACGCTTCGGGCTCGCGGCCGTCCGCGGACGAGAACAAGAAGGAGG
GGAAACCGCCCCGCGCCTTCGACCCGGCGCTGCTGGAGTTCTTGGTGTGCCCGCTGTCCA
AGAAGCCGCTCAGATATGAACCATCGACAAATGAATTGATTAATGAAGAGCTGGGAATAG
CCTATCCGATTATTGACGGGATTCCTAATATGATACCACAGGCAGCTAGGATGACACATC
AAAATAAGAAGCAAGAAGAAATGAAGCAGCACTAGGTCATACGTAAACACAACACAAGGA
AATTTTCTAAACACCATCCACCTTCGAAGAAGCCAGCGTGGCGGGTGGTGGGTGGGAGAG
AAGAATGTTTCTGTCTCTTCCCACGCTGACTGTCCTTGTCCCCCTGGTCTCTCTGGGAGG
ACTGCTGTACTCCGCCTCCGTGGAAGAGAGCTTCCCCCAGGGCTGCACCAGCACAGCCAG
CCTGTGCTTCTACAGTCTGCTCCTGCCCATCACCATCCCCGTTTACGTGTTCTTCCACCT
CTGGACTTGGATGGGTATTAAACTCTTCCGGCATAATTAACGCAGCCGGAGCCACGATGG
TATTTAAACTCATGATATGCTTGAGTGAGTGTGTCCGAAAGCTCCGCTACATGGAAATAC
TGGAAACCCAGACTTTGCAGGAAAGAGGCTTTGCTTATTAGCCTTTGTCAGAGGTTTAGG
ACTATGTGACGTTAAAGCTGCAAGAGGCTTCTTTCTTGTATTTTGGTTCTTCCCCTGCTT
TTCGAAGGTTCTGATTTATTATACCTGGTCTCTCGGAAGAAACATTTCAACAAAGTGGCT
TGTTGGAAATTAGCACCCCCAGCCATCATCTGATGGCTGTTTCTTATCCCATTCATAATT
AAAAATTACTAATTCGAAATTGTAGGTTTGTTTTTAGGTTCAAAGCCTTTGGTAAAGCCA
CATGTGAAGGATGACTGAGATAATTCCAAGGAGCTATGGGGAGTAATTGTAGAGAAATGC
ATTTGGGCTAGTGTGATATAAAACTATAATAAAATGTAAACTTCATGTACTTGCCAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGGCTGGAGCGGCGCAGCGGGTGAGGTCCGCGCGCCGGCGGCCAGACCATGCTGAGCG
GAGCGCGCGGTCGGCTCGCCTTAGCGCTGCGAGGGACACGCGCGCCGCCGTCCGCGGTCG
CCAGGAGGTGCCTGCACGCTTCGGGCTCGCGGCCGTCCGCGGACGAGAACAAGAAGGAGG
GGAAACCGCCCCGCGCCTTCGACCCGGCGCTGCTGGAGTTCTTGGTGTGCCCGCTGTCCA
AGAAGCCGCTCAGATATGAACCATCGACAAATGAATTGATTAATGAAGAGCTGGGAATAG
CCTATCCGATTATTGACGGGATTCCTAATATGATACCACAGGCAGCTAGGATGACACATC
AAAATAAGAAGCAAGAAGAAATGAAGCAGCACTAGGTCATACGTAAACACAACACAAGGA
AATTTTCTAAACACCATCCACCTTCGAAGAAGCCAGCGTGGCGGGTGGTGGGTGGGAGAG
AAGAATGTTTCTGTCTCTTCCCACGCTGACTGTCCTTGTCCCCCTGGTCTCTCTGGGAGG
ACTGCTGTACTCCGCCTCCGTGGAAGAGAGCTTCCCCCAGGGCTGCACCAGCACAGCCAG
CCTGTGCTTCTACAGTCTGCTCCTGCCCATCACCATCCCCGTTTACGTGTTCTTCCACCT
CTGGACTTGGATGGGTATTAAACTCTTCCGGCATAATTAACGCAGCCGGAGCCACGATGG
TATTTAAACTCATGATATGCTTGAGTGAGTGTGTCCGAAAGCTCCGCTACATGGAAATAC
TGGAAACCCAGACTTTGCAGGAAAGAGGCTTTGCTTATTAGCCTTTGTCAGAGGTTTAGG
ACTATGTGACGTTAAAGCTGCAAGAGGCTTCTTTCTTGTATTTTGGTTCTTCCCCTGCTT
TTCGAAGGTTCTGATTTATTATACCTGGTCTCTCGGAAGAAACATTTCAACAAAGTGGCT
TGTTGGAAATTAGCACCCCCAGCCATCATCTGATGGCTGTTTCTTATCCCATTCATAATT
AAAAATTACTAATTCGAAATTGTAGGTTTGTTTTTAGGTTCAAAGCCTTTGGTAAAGCCA
CATGTGAAGGATGACTGAGATAATTCCAAGGAGCTATGGGGAGTAATTGTAGAGAAATGC
ATTTGGGCTAGTGTGATATAAAACTATAATAAAATGTAAACTTCATGTACTTGCCAAAAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q96I23_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96I23_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               405-672, - strand, RNAz p=0.983369
               

               
               909-1028, - strand, RNAz p=0.734974

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               405-672, - strand, RNAz p=0.983369
               

               
               909-1028, - strand, RNAz p=0.734974

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               246-1200, gnl|bosTau2|chr4 (31097978-31098919)
               

               
               246-1200, gnl|Hg17|chr4 (89800366-89799414)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               246-1200, gnl|bosTau2|chr4 (31097978-31098919)
               

               
               246-1200, gnl|Hg17|chr4 (89800366-89799414)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               cki (0.826173)
               

               
               ldo (0.679018)
               

               
               ssp (0.677599)
               

               
               ste (0.540833)
               

               
               cbl (0.45919)
               

               
               nco (0.323468)
               

               
               sme (0.305437)
               

               
               spl (0.286369)
               

               
               bla (0.248694)
               

               
               tes (0.207814)
               

               
               ton (0.1755)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.826173)
               

               
               ldo (0.679018)
               

               
               ssp (0.677599)
               

               
               ste (0.540833)
               

               
               cbl (0.45919)
               

               
               nco (0.323468)
               

               
               sme (0.305437)
               

               
               spl (0.286369)
               

               
               bla (0.248694)
               

               
               tes (0.207814)
               

               
               ton (0.1755)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	405-672, - strand, RNAz p=0.983369
	909-1028, - strand, RNAz p=0.734974

	246-1200, gnl\|bosTau2\|chr4 (31097978-31098919)
	246-1200, gnl\|Hg17\|chr4 (89800366-89799414)

	cki (0.826173)
	ldo (0.679018)
	ssp (0.677599)
	ste (0.540833)
	cbl (0.45919)
	nco (0.323468)
	sme (0.305437)
	spl (0.286369)
	bla (0.248694)
	tes (0.207814)
	ton (0.1755)
	pla (0.133672)
	cov (0.132153)
	pgl (0.118483)
	ecc (0.115035)
	cty (0.10408)