Non-Coding RNA Search

Ss1.1-Lng1-LNG010012G01.5

Sequence:


               
               ATCCTTTAAGCAGGGTGGGGCTTGGTGCGCGTGCGCGGTTTTACTGCTCCGCCCCAACTG
CCAACTCTGCGCGCAGGCGAGGTAGGCGCTCCATGCCTCGGTTTACGCGTGCGCATTATT
GAGTCTGGCTCCGGAAGACCGGACGCTTGCGCAGTGGGGACTACGGTGACAGTCCCCTGG
GTCCGCCACCGGCCAGTCATGGCGGAGCCTTGGTCGGGGCAGTCCTTGCAGGTTCTGCCG
GCCACGGTGCTGGGCGCGCTGGGCGCCCTCGGCAGCGAGTTCCTGCGGGAGTGGGAGGCT
CAGGACATGCGCGTGACCCTCTTCAAGTTGCTGCTGCTTTGGTTGGTGTTAAGTCTCCTG
AGCATCCAGCTGGCGTGGGGGTTCTACGGGAGTACGGTGACCGGGCTGTATCACCGCCCA
GGTCTGGGCAGCCAGAACGGATCCACACCTGATGGCTCCACGCATTTCTCGTCCTGGGAA
ACAGCAGCAAATGAACCTCTCAAAACCCACAGAGAATAAGGGAAGGCAGCAAGAGGGGTC
TCCAGGGACATCACCGGTTCTGCTACTGCCCAGACCCCAGGGACGACTGCAGAGGAGTAG
GGGTTGGGGGGCGGGGGGTACCCCAGTGCTGGCAGGCCTAGGCCTCCCCTGCCCTTGGCC
TTGCCTCCAGCAGCCCCAAGCCAGTAATTTGCCTCTACCTTTAGCTGGGTGCCTTAAGGA
AAGGCATAATCCTCCTCTTTCAGGGGTCAACTCAGAAGCCTCTGGGTTGGGATGACTAAC
AGTCCATTTTCTGTCTTGACTTTTTCCTGGTCCTCTTCCCATCCCCTTGGGATGTGACCC
CATAGAGATTTGTTCTTCTGAGAAGAAGCCTGAGGTTGACCAACTCAGATTTGTAAGGCA
AGTCTCTTTTCTCCTAAGTCCTGGGTTTTCCTAAATTTCTTTGATTTTGCTTTGTTGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCTTTAAGCAGGGTGGGGCTTGGTGCGCGTGCGCGGTTTTACTGCTCCGCCCCAACTG
CCAACTCTGCGCGCAGGCGAGGTAGGCGCTCCATGCCTCGGTTTACGCGTGCGCATTATT
GAGTCTGGCTCCGGAAGACCGGACGCTTGCGCAGTGGGGACTACGGTGACAGTCCCCTGG
GTCCGCCACCGGCCAGTCATGGCGGAGCCTTGGTCGGGGCAGTCCTTGCAGGTTCTGCCG
GCCACGGTGCTGGGCGCGCTGGGCGCCCTCGGCAGCGAGTTCCTGCGGGAGTGGGAGGCT
CAGGACATGCGCGTGACCCTCTTCAAGTTGCTGCTGCTTTGGTTGGTGTTAAGTCTCCTG
AGCATCCAGCTGGCGTGGGGGTTCTACGGGAGTACGGTGACCGGGCTGTATCACCGCCCA
GGTCTGGGCAGCCAGAACGGATCCACACCTGATGGCTCCACGCATTTCTCGTCCTGGGAA
ACAGCAGCAAATGAACCTCTCAAAACCCACAGAGAATAAGGGAAGGCAGCAAGAGGGGTC
TCCAGGGACATCACCGGTTCTGCTACTGCCCAGACCCCAGGGACGACTGCAGAGGAGTAG
GGGTTGGGGGGCGGGGGGTACCCCAGTGCTGGCAGGCCTAGGCCTCCCCTGCCCTTGGCC
TTGCCTCCAGCAGCCCCAAGCCAGTAATTTGCCTCTACCTTTAGCTGGGTGCCTTAAGGA
AAGGCATAATCCTCCTCTTTCAGGGGTCAACTCAGAAGCCTCTGGGTTGGGATGACTAAC
AGTCCATTTTCTGTCTTGACTTTTTCCTGGTCCTCTTCCCATCCCCTTGGGATGTGACCC
CATAGAGATTTGTTCTTCTGAGAAGAAGCCTGAGGTTGACCAACTCAGATTTGTAAGGCA
AGTCTCTTTTCTCCTAAGTCCTGGGTTTTCCTAAATTTCTTTGATTTTGCTTTGTTGGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5EAA5_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5EAA5_BOVIN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               21-117, - strand, RNAz p=0.620033
               

               
               47-832, + strand, RNAz p=0.934662

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               21-117, - strand, RNAz p=0.620033
               

               
               47-832, + strand, RNAz p=0.934662

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_022171, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_022171, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               9-423, gnl|bosTau2|chr22 (37850386-37850801)
               

               
               9-423, gnl|canFam2|chr20 (42823641-42823156)
               

               
               9-423, gnl|dasNov1|scaffold_15492 (13244-13752)
               

               
               9-423, gnl|echTel1|scaffold_295621 (12358-11862)
               

               
               9-423, gnl|hg17|chr3 (49424653-49425168)
               

               
               9-423, gnl|Hg17|chr3 (49424672-49425079)
               

               
               9-423, gnl|loxAfr1|scaffold_2802 (53238-53740)
               

               
               9-423, gnl|mm7|chr9 (108039589-108039071)
               

               
               9-423, gnl|Mm7|chr9 (108039568-108039152)
               

               
               9-423, gnl|monDom2|scaffold_5 (75809555-75808977)
               

               
               9-423, gnl|oryCun1|scaffold_187923 (63450-62933)
               

               
               9-423, gnl|panTro1|chr2 (50951402-50951902)
               

               
               9-423, gnl|rheMac2|chr2 (87023068-87022543)
               

               
               9-423, gnl|rn3|chr16_random (1009713-1009196)
               


               
               476-960, gnl|bosTau2|chr22 (37852174-37852688)
               

               
               476-960, gnl|Hg17|chr3 (49427256-49428071)
               

               
               476-960, gnl|Mm7|chr9 (108037686-108037201)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-423, gnl|bosTau2|chr22 (37850386-37850801)
               

               
               9-423, gnl|canFam2|chr20 (42823641-42823156)
               

               
               9-423, gnl|dasNov1|scaffold_15492 (13244-13752)
               

               
               9-423, gnl|echTel1|scaffold_295621 (12358-11862)
               

               
               9-423, gnl|hg17|chr3 (49424653-49425168)
               

               
               9-423, gnl|Hg17|chr3 (49424672-49425079)
               

               
               9-423, gnl|loxAfr1|scaffold_2802 (53238-53740)
               

               
               9-423, gnl|mm7|chr9 (108039589-108039071)
               

               
               9-423, gnl|Mm7|chr9 (108039568-108039152)
               

               
               9-423, gnl|monDom2|scaffold_5 (75809555-75808977)
               

               
               9-423, gnl|oryCun1|scaffold_187923 (63450-62933)
               

               
               9-423, gnl|panTro1|chr2 (50951402-50951902)
               

               
               9-423, gnl|rheMac2|chr2 (87023068-87022543)
               

               
               9-423, gnl|rn3|chr16_random (1009713-1009196)
               


               
               476-960, gnl|bosTau2|chr22 (37852174-37852688)
               

               
               476-960, gnl|Hg17|chr3 (49427256-49428071)
               

               
               476-960, gnl|Mm7|chr9 (108037686-108037201)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ton (0.1755)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	21-117, - strand, RNAz p=0.620033
	47-832, + strand, RNAz p=0.934662

	9-423, gnl\|bosTau2\|chr22 (37850386-37850801)
	9-423, gnl\|canFam2\|chr20 (42823641-42823156)
	9-423, gnl\|dasNov1\|scaffold_15492 (13244-13752)
	9-423, gnl\|echTel1\|scaffold_295621 (12358-11862)
	9-423, gnl\|hg17\|chr3 (49424653-49425168)
	9-423, gnl\|Hg17\|chr3 (49424672-49425079)
	9-423, gnl\|loxAfr1\|scaffold_2802 (53238-53740)
	9-423, gnl\|mm7\|chr9 (108039589-108039071)
	9-423, gnl\|Mm7\|chr9 (108039568-108039152)
	9-423, gnl\|monDom2\|scaffold_5 (75809555-75808977)
	9-423, gnl\|oryCun1\|scaffold_187923 (63450-62933)
	9-423, gnl\|panTro1\|chr2 (50951402-50951902)
	9-423, gnl\|rheMac2\|chr2 (87023068-87022543)
	9-423, gnl\|rn3\|chr16_random (1009713-1009196)

	476-960, gnl\|bosTau2\|chr22 (37852174-37852688)
	476-960, gnl\|Hg17\|chr3 (49427256-49428071)
	476-960, gnl\|Mm7\|chr9 (108037686-108037201)

	ton (0.1755)
	cje (0.165235)
	eli (0.151814)
	nmm (0.132802)
	ese (0.126502)
	jca (0.11396)
	cty (0.10408)