Ss1.1-Lng1-LNG010013B12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTAACGTGAGCTTATCCCCCTCTGCTGTCTCGAGGTAAGGCAGTTGTTGGCCTACCTCC TCCGCTACCCTGCTGGCCGGATTGAAAGCCGTGGATGTGGGCCTCAGAATAATGACGCGG GTATGCTGGTTGGTGAGACAGGACAGCCGGCACCAGCGTATCAAGCTTCCACATTTGGAA GCAGTCATTGTTGGGCGAGGCCCAGAGACCAAGATCACTGACAAGAAGTGCTCTCGACAG CAAGTGCAATTGAAAGCAGAATGTAACAAAGGATATGTCAAGGTAAAGCAGGTAGGGGTC AATCCCACCAGCATTGACTCAGTCATAATTGGTAAGGACCAAGAGATGAAGCTGCAGCCT GGCCAGGTTCTCCACATGGTGAATGAACTTTATCCATATGTTATAGAGTTTGAGGAAGAG GCAAAGAGCCCTGGCCTGAAAACACACAGGAAGAGAAAGAGGTCAGGCAACAGTGATTCT GTAGAAAGGGATGCTTCTCAGGAAGCTAAGCCCAGTACAGGAGCAGAACCTGGGAGCAAC CCTAGCCAGTGCTCTGTGCCCCCAAAGAAGGAAAAGGATGCAGCCACCAAAAAGGAATCA TTGAGCCACTGGAGTCAAGGCTTGAAGATTTCCATGGAGGACCCCAAAATGCAGGTTTAC AAAGATGACCAGGTGGTGGTGATTAAGGATAAATACCCCAAGGCTCGTTACCACTGGCTG GTCTTACCATGGGCCTCCATTTCCAGTCTGAAGGCTGTTACCAGAGAACACCTTGAGCTC CTCAGACACATGCACACTGTGGGGGAAAAGGTGATTGCAGACTTTGCTGGCTCCAGCAAA CTCCGCTTCCGATTGGGCTACCACGCCATTCCTAGCATGAGTCACGTACACCTTCATGTG ATCAGCCAGGACTTTGATTCTCCTTGCCTTAAAAACAAAAAGCATTGGAATTCTTTCAAT ACCGAATACTTCCTGGAATCACAAGCTGTGATTGAGATGGTACAAGAGGCTGGCAGAGTG ACTGTCCGAGATGGGATGCCTGAGCTCTTGAAGCTGCCCCTCCGTTGTCATGAGTGCCAG CAGCTGCTGCCTTCCATCCCTCAGCTGAAAGAGCATCTCAGGAAGCACTGGCCAAAGTGA CTCTGCAGCAGGTGTGGCTGGTTGTTTACAGCAAATTCCTGGCACCTCTTTGGAATTAAA TGTGAATTTTTATTTCTTGAATTAAAACATACATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTAACGTGAGCTTATCCCCCTCTGCTGTCTCGAGGTAAGGCAGTTGTTGGCCTACCTCC TCCGCTACCCTGCTGGCCGGATTGAAAGCCGTGGATGTGGGCCTCAGAATAATGACGCGG GTATGCTGGTTGGTGAGACAGGACAGCCGGCACCAGCGTATCAAGCTTCCACATTTGGAA GCAGTCATTGTTGGGCGAGGCCCAGAGACCAAGATCACTGACAAGAAGTGCTCTCGACAG CAAGTGCAATTGAAAGCAGAATGTAACAAAGGATATGTCAAGGTAAAGCAGGTAGGGGTC AATCCCACCAGCATTGACTCAGTCATAATTGGTAAGGACCAAGAGATGAAGCTGCAGCCT GGCCAGGTTCTCCACATGGTGAATGAACTTTATCCATATGTTATAGAGTTTGAGGAAGAG GCAAAGAGCCCTGGCCTGAAAACACACAGGAAGAGAAAGAGGTCAGGCAACAGTGATTCT GTAGAAAGGGATGCTTCTCAGGAAGCTAAGCCCAGTACAGGAGCAGAACCTGGGAGCAAC CCTAGCCAGTGCTCTGTGCCCCCAAAGAAGGAAAAGGATGCAGCCACCAAAAAGGAATCA TTGAGCCACTGGAGTCAAGGCTTGAAGATTTCCATGGAGGACCCCAAAATGCAGGTTTAC AAAGATGACCAGGTGGTGGTGATTAAGGATAAATACCCCAAGGCTCGTTACCACTGGCTG GTCTTACCATGGGCCTCCATTTCCAGTCTGAAGGCTGTTACCAGAGAACACCTTGAGCTC CTCAGACACATGCACACTGTGGGGGAAAAGGTGATTGCAGACTTTGCTGGCTCCAGCAAA CTCCGCTTCCGATTGGGCTACCACGCCATTCCTAGCATGAGTCACGTACACCTTCATGTG ATCAGCCAGGACTTTGATTCTCCTTGCCTTAAAAACAAAAAGCATTGGAATTCTTTCAAT ACCGAATACTTCCTGGAATCACAAGCTGTGATTGAGATGGTACAAGAGGCTGGCAGAGTG ACTGTCCGAGATGGGATGCCTGAGCTCTTGAAGCTGCCCCTCCGTTGTCATGAGTGCCAG CAGCTGCTGCCTTCCATCCCTCAGCTGAAAGAGCATCTCAGGAAGCACTGGCCAAAGTGA CTCTGCAGCAGGTGTGGCTGGTTGTTTACAGCAAATTCCTGGCACCTCTTTGGAATTAAA TGTGAATTTTTATTTCTTGAATTAAAACATACATTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 103-221, + strand, RNAz p=0.602932 | |
| 329-528, + strand, RNAz p=0.527698 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 103-221, + strand, RNAz p=0.602932 | |
| 329-528, + strand, RNAz p=0.527698 |
| Homologous human UTR: 3 entry(ies) | More info |
| Homologous human UTR: 3 entry(ies) | Help | Less info |
| 3' of BX538161, + | |
| 5' of BC001628, + | |
| 3' of BX538161, + |
| Homologous human UTR: 3 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BX538161, + | |
| 5' of BC001628, + | |
| 3' of BX538161, + |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 103-252, gnl|bosTau2|chr5 (33801989-33802137) | |
| 103-252, gnl|Hg17|chr9 (32979898-32979750) | |
| 103-252, gnl|Mm7|chr4 (40835819-40835673) | |
| 290-595, gnl|bosTau2|chr5 (33803771-33804076) | |
| 290-595, gnl|Hg17|chr9 (32977846-32977541) | |
| 290-595, gnl|Mm7|chr4 (40833601-40833314) | |
| 653-881, gnl|bosTau2|chr5 (33805622-33805850) | |
| 653-881, gnl|canFam2|chr11 (53148952-53149221) | |
| 653-881, gnl|danRer3|chr1 (51830123-51829872) | |
| 653-881, gnl|dasNov1|scaffold_19614 (5565-5296) | |
| 653-881, gnl|echTel1|scaffold_184256 (8093-8358) | |
| 653-881, gnl|fr1|chrUn (231434883-231435124) | |
| 653-881, gnl|galGal2|chrZ_random (4295685-4295944) | |
| 653-881, gnl|hg17|chr9 (32974613-32974882) | |
| 653-881, gnl|Hg17|chr9 (32974857-32974629) | |
| 653-881, gnl|loxAfr1|scaffold_17890 (45452-45718) | |
| 653-881, gnl|mm7|chr4 (40829417-40829686) | |
| 653-881, gnl|Mm7|chr4 (40829660-40829432) | |
| 653-881, gnl|monDom2|scaffold_19 (14475403-14475672) | |
| 653-881, gnl|oryCun1|scaffold_176830 (41610-41345) | |
| 653-881, gnl|panTro1|chr11 (33469105-33469374) | |
| 653-881, gnl|rheMac2|chr15 (44236879-44236610) | |
| 653-881, gnl|rn3|chr5 (58067867-58068131) | |
| 653-881, gnl|tetNig1|chr18 (2529456-2529200) | |
| 653-881, gnl|xenTro1|scaffold_294 (740680-740925) | |
| 984-1236, gnl|bosTau2|chr5 (33811490-33811759) | |
| 984-1236, gnl|Hg17|chr9 (32963652-32963386) | |
| 984-1236, gnl|Mm7|chr4 (40825178-40824938) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 103-252, gnl|bosTau2|chr5 (33801989-33802137) | |
| 103-252, gnl|Hg17|chr9 (32979898-32979750) | |
| 103-252, gnl|Mm7|chr4 (40835819-40835673) | |
| 290-595, gnl|bosTau2|chr5 (33803771-33804076) | |
| 290-595, gnl|Hg17|chr9 (32977846-32977541) | |
| 290-595, gnl|Mm7|chr4 (40833601-40833314) | |
| 653-881, gnl|bosTau2|chr5 (33805622-33805850) | |
| 653-881, gnl|canFam2|chr11 (53148952-53149221) | |
| 653-881, gnl|danRer3|chr1 (51830123-51829872) | |
| 653-881, gnl|dasNov1|scaffold_19614 (5565-5296) | |
| 653-881, gnl|echTel1|scaffold_184256 (8093-8358) | |
| 653-881, gnl|fr1|chrUn (231434883-231435124) | |
| 653-881, gnl|galGal2|chrZ_random (4295685-4295944) | |
| 653-881, gnl|hg17|chr9 (32974613-32974882) | |
| 653-881, gnl|Hg17|chr9 (32974857-32974629) | |
| 653-881, gnl|loxAfr1|scaffold_17890 (45452-45718) | |
| 653-881, gnl|mm7|chr4 (40829417-40829686) | |
| 653-881, gnl|Mm7|chr4 (40829660-40829432) | |
| 653-881, gnl|monDom2|scaffold_19 (14475403-14475672) | |
| 653-881, gnl|oryCun1|scaffold_176830 (41610-41345) | |
| 653-881, gnl|panTro1|chr11 (33469105-33469374) | |
| 653-881, gnl|rheMac2|chr15 (44236879-44236610) | |
| 653-881, gnl|rn3|chr5 (58067867-58068131) | |
| 653-881, gnl|tetNig1|chr18 (2529456-2529200) | |
| 653-881, gnl|xenTro1|scaffold_294 (740680-740925) | |
| 984-1236, gnl|bosTau2|chr5 (33811490-33811759) | |
| 984-1236, gnl|Hg17|chr9 (32963652-32963386) | |
| 984-1236, gnl|Mm7|chr4 (40825178-40824938) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| mas (0.210305) | |
| tes (0.207814) | |
| ill (0.175593) | |
| cje (0.165235) | |
| hlv (0.139256) | |
| jej (0.0989218) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| tes (0.207814) | |
| ill (0.175593) | |
| cje (0.165235) | |
| hlv (0.139256) | |
| jej (0.0989218) |