Non-Coding RNA Search

Ss1.1-Lng1-LNG010013E07.5

Sequence:


               
               GTGAGCTGCGAACCTGCGGGCGGGCGAGCTTCCCCAGAGCTAAATTGAAAGAAGAGTAAA
GACCTCTAAAAAATCATCTGGAAATATCCCTAAATATTTGTAATTGTGTATAAGCAGCTA
AAGAGAAGTAGGCCTCCAACAAAATTAACTAAATAATTGAGGCAGGGTTTTGTGCGTGTC
ATCAATTCTATCCAGAAGTTGAAGAATCTTCCTTTGAGTTTAAGGATTGTGTGCACTTAA
TGAGAGAATGACTTTTCAGTTTAATTTCACAATAGAAGACCATCTGGAAGATGAATTAAT
ACCCCTTGAAGATGGAGCTTTGGCCCTGGATTTCTCTAAAGAGTCTTCAGTCTCAGAAAG
ACAAAAAGGTAAACACAGTGATAAAAAATCTTCTACAGAACAGTTTGACTTGCTTCAGGA
TCTTTTGTGGGAACATCAGTCAGGGGGAAATGCAGCTCCCTCTCAAGACACAGACCACTC
ACTCAATGGAACGAACAGTTTAAGTAACCTGGAGCCATATGAAAAAAAGCCCTGCTTGAG
AGTTGCCAAAGAAACATGCTCTGCCTAAAGATTTAAAGAAAGTGTTAGAAAGTAAAGTCA
TAGAAACATTACCAGGCCTTCAGCATGTTAACATATCAGTAGTGAAAACCATCCTTTTGA
AAGATAACTTTTCTGGAGAAAACATCATTTCAAAAAGCTTTTCTTCTCACTCTGATCTGA
TTACAGGTGTTTATGAAGGAGGTTTAAAAATCTGGGAGTGTACCTTTGACCTCCTGGCCT
ATTTTACAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAGCTGCGAACCTGCGGGCGGGCGAGCTTCCCCAGAGCTAAATTGAAAGAAGAGTAAA
GACCTCTAAAAAATCATCTGGAAATATCCCTAAATATTTGTAATTGTGTATAAGCAGCTA
AAGAGAAGTAGGCCTCCAACAAAATTAACTAAATAATTGAGGCAGGGTTTTGTGCGTGTC
ATCAATTCTATCCAGAAGTTGAAGAATCTTCCTTTGAGTTTAAGGATTGTGTGCACTTAA
TGAGAGAATGACTTTTCAGTTTAATTTCACAATAGAAGACCATCTGGAAGATGAATTAAT
ACCCCTTGAAGATGGAGCTTTGGCCCTGGATTTCTCTAAAGAGTCTTCAGTCTCAGAAAG
ACAAAAAGGTAAACACAGTGATAAAAAATCTTCTACAGAACAGTTTGACTTGCTTCAGGA
TCTTTTGTGGGAACATCAGTCAGGGGGAAATGCAGCTCCCTCTCAAGACACAGACCACTC
ACTCAATGGAACGAACAGTTTAAGTAACCTGGAGCCATATGAAAAAAAGCCCTGCTTGAG
AGTTGCCAAAGAAACATGCTCTGCCTAAAGATTTAAAGAAAGTGTTAGAAAGTAAAGTCA
TAGAAACATTACCAGGCCTTCAGCATGTTAACATATCAGTAGTGAAAACCATCCTTTTGA
AAGATAACTTTTCTGGAGAAAACATCATTTCAAAAAGCTTTTCTTCTCACTCTGATCTGA
TTACAGGTGTTTATGAAGGAGGTTTAAAAATCTGGGAGTGTACCTTTGACCTCCTGGCCT
ATTTTACAAAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56417704|emb|CAI19362.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56417704|emb|CAI19362.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               612-731, - strand, RNAz p=0.714151

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               612-731, - strand, RNAz p=0.714151

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               30-792, gnl|bosTau2|chr16 (25627798-25627035)
               

               
               30-792, gnl|Hg17|chr1 (166494717-166493951)
               

               
               30-792, gnl|Mm7|chr1 (163959287-163960006)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-792, gnl|bosTau2|chr16 (25627798-25627035)
               

               
               30-792, gnl|Hg17|chr1 (166494717-166493951)
               

               
               30-792, gnl|Mm7|chr1 (163959287-163960006)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               sin (0.174948)
               

               
               eye (0.170503)
               

               
               eli (0.151814)
               

               
               bla (0.124347)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               eli (0.151814)
               

               
               bla (0.124347)

	30-792, gnl\|bosTau2\|chr16 (25627798-25627035)
	30-792, gnl\|Hg17\|chr1 (166494717-166493951)
	30-792, gnl\|Mm7\|chr1 (163959287-163960006)