Non-Coding RNA Search

Ss1.1-Lng1-LNG010014A09.5

Sequence:


               
               CCTTCCCATCCCGTTCTACCGCGGCCAACATGGCTGCTCCCTGTGTGTTTTGTGGTGCAG
CCGTTTCCTATCGACTCTTTCTCGGGTGTAGGGTTAGCTTTGCGCGGGGACAAGTCCTCT
GGAAAGCCGCAGCTCCTGAACTGCAGGCAGGTGCCAGATGCCAGATATTAAGGCTGAGAC
ACACTGCTGTTGTGACAACAAAGAAAAATGTTGCAGCCTCAAGACGTGAAACTTACACAG
TGGATTTTATTAAAAAGCAGATTGAAGAGTTCAATATAGGAAAGAGACACTTAGCCAACA
TGATGGGAGAAGATCCAGAAACTTTTACCCAAGAGGATATTGATAGAGCTATCGCTTACC
TTTTTCCCAGTGGTTTGTTTGAGAAGCGAGCCCGGCCAATAATGAAGCATCCTGAAGAGA
TTTTTCCAAAACAAAGAGCAATCCAGTGGGGAGAAGATGGCCGTCCATTTCATTTTCTCT
TTTATACTGGCAAACAGTCGTATTATTCGTTAATGCATGACACATATGGAAAGCTCCTAG
ATGTAGAAAAACATCACAACCAGTTGAGAGCCAAAGATCTCTTGGCAGAAAAAACGAAAA
TCTTAAAAGACCCGATTGGCAGCAGATGGCTGATTAAGGAGGAACTGGAAGAAATGTTAG
TGGAAAAACTGTCAGATCAAGATTACGCACAGTTTATTCGGCTATTGGAAAGATTATCGG
CGTTGCCATGTGGTGCCACTGAAGAAGACTTTGTGAACAGGTTCCGTCGGAGTATACCTA
TTCAATCAAAAAAACAGCTGATTGAGCCTTTGCAGTATGACGAGCAGGGGATGGCCTTCA
GCAGAGGCGAAGGTAAAAGAAAAACGGCAAAGGCAGAAGTGGTTGTTTATGGCCAAGGAA
GTGGGAGAATAGACGTGAACGGAGTCGACTACCTGCTCTACTTCCCAGTGACACAGGACA
GAGAACAGCTGATGTTCCCCCTCCACTTCCTTGACCGGCTTGGGAAGCACGACATGACCT
GCGCGGTGTCGGGGGGCGGGAGGTCGGCGCAGGCAGGGGCCGTCCGCTTGGCGATGGCGA
GAGCCTTGTGCAGCTTTGTCACCGAGGACGAGGTCGAGTGGATGAGACAAGCTGGACTGC
TAACCGCTGACCCCCGTGTCAGAGAACGGAAGAAGCCAGGCCAAGAGGGAGCCCGTAGGA
AGTTCACCTGGAAGAAGCGCTAGGTGATTTCAGCAGGAGAGGAGCGAGCACCGTGAGAGC
CTGCCTGGCACCTGGCGCACGCATGGGGCACCTGGCGGCCCCGGCAGCACCACCAGACAT
CGGAGCTGTGAGAGGATTGGTTTTAAAATGCTACTTTGTAAAGGTGACCTTGAAAAAAAA
ATTCTTTTTTAAATGTTTAGCAAAAAAAAAAAAAAGGGGGGGCCTTTTAAAATTTTCCTT
GGGGGGGCCAAAACAACTCTTAGAATCTTGGCATGTAAAAAGGGGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTCCCATCCCGTTCTACCGCGGCCAACATGGCTGCTCCCTGTGTGTTTTGTGGTGCAG
CCGTTTCCTATCGACTCTTTCTCGGGTGTAGGGTTAGCTTTGCGCGGGGACAAGTCCTCT
GGAAAGCCGCAGCTCCTGAACTGCAGGCAGGTGCCAGATGCCAGATATTAAGGCTGAGAC
ACACTGCTGTTGTGACAACAAAGAAAAATGTTGCAGCCTCAAGACGTGAAACTTACACAG
TGGATTTTATTAAAAAGCAGATTGAAGAGTTCAATATAGGAAAGAGACACTTAGCCAACA
TGATGGGAGAAGATCCAGAAACTTTTACCCAAGAGGATATTGATAGAGCTATCGCTTACC
TTTTTCCCAGTGGTTTGTTTGAGAAGCGAGCCCGGCCAATAATGAAGCATCCTGAAGAGA
TTTTTCCAAAACAAAGAGCAATCCAGTGGGGAGAAGATGGCCGTCCATTTCATTTTCTCT
TTTATACTGGCAAACAGTCGTATTATTCGTTAATGCATGACACATATGGAAAGCTCCTAG
ATGTAGAAAAACATCACAACCAGTTGAGAGCCAAAGATCTCTTGGCAGAAAAAACGAAAA
TCTTAAAAGACCCGATTGGCAGCAGATGGCTGATTAAGGAGGAACTGGAAGAAATGTTAG
TGGAAAAACTGTCAGATCAAGATTACGCACAGTTTATTCGGCTATTGGAAAGATTATCGG
CGTTGCCATGTGGTGCCACTGAAGAAGACTTTGTGAACAGGTTCCGTCGGAGTATACCTA
TTCAATCAAAAAAACAGCTGATTGAGCCTTTGCAGTATGACGAGCAGGGGATGGCCTTCA
GCAGAGGCGAAGGTAAAAGAAAAACGGCAAAGGCAGAAGTGGTTGTTTATGGCCAAGGAA
GTGGGAGAATAGACGTGAACGGAGTCGACTACCTGCTCTACTTCCCAGTGACACAGGACA
GAGAACAGCTGATGTTCCCCCTCCACTTCCTTGACCGGCTTGGGAAGCACGACATGACCT
GCGCGGTGTCGGGGGGCGGGAGGTCGGCGCAGGCAGGGGCCGTCCGCTTGGCGATGGCGA
GAGCCTTGTGCAGCTTTGTCACCGAGGACGAGGTCGAGTGGATGAGACAAGCTGGACTGC
TAACCGCTGACCCCCGTGTCAGAGAACGGAAGAAGCCAGGCCAAGAGGGAGCCCGTAGGA
AGTTCACCTGGAAGAAGCGCTAGGTGATTTCAGCAGGAGAGGAGCGAGCACCGTGAGAGC
CTGCCTGGCACCTGGCGCACGCATGGGGCACCTGGCGGCCCCGGCAGCACCACCAGACAT
CGGAGCTGTGAGAGGATTGGTTTTAAAATGCTACTTTGTAAAGGTGACCTTGAAAAAAAA
ATTCTTTTTTAAATGTTTAGCAAAAAAAAAAAAAAGGGGGGGCCTTTTAAAATTTTCCTT
GGGGGGGCCAAAACAACTCTTAGAATCTTGGCATGTAAAAAGGGGGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|60650272|gb|AAX31368.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|60650272|gb|AAX31368.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               159-344, gnl|bosTau2|chr11 (6669869-6670054)
               

               
               159-344, gnl|Hg17|chr2 (105124141-105124326)
               

               
               159-344, gnl|Mm7|chr1 (43102848-43103035)
               


               
               684-856, gnl|bosTau2|chr11 (6697508-6697680)
               

               
               684-856, gnl|Hg17|chr2 (105167377-105167549)
               

               
               684-856, gnl|Mm7|chr1 (43138827-43138999)
               


               
               959-1131, gnl|bosTau2|chr11 (6699326-6699498)
               

               
               959-1131, gnl|Hg17|chr2 (105172128-105172300)
               

               
               959-1131, gnl|Mm7|chr1 (43143679-43143851)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               159-344, gnl|bosTau2|chr11 (6669869-6670054)
               

               
               159-344, gnl|Hg17|chr2 (105124141-105124326)
               

               
               159-344, gnl|Mm7|chr1 (43102848-43103035)
               


               
               684-856, gnl|bosTau2|chr11 (6697508-6697680)
               

               
               684-856, gnl|Hg17|chr2 (105167377-105167549)
               

               
               684-856, gnl|Mm7|chr1 (43138827-43138999)
               


               
               959-1131, gnl|bosTau2|chr11 (6699326-6699498)
               

               
               959-1131, gnl|Hg17|chr2 (105172128-105172300)
               

               
               959-1131, gnl|Mm7|chr1 (43143679-43143851)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               ste (0.540833)
               

               
               nca (0.273748)
               

               
               che (0.272628)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               cst (0.140036)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.540833)
               

               
               nca (0.273748)
               

               
               che (0.272628)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               cst (0.140036)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	159-344, gnl\|bosTau2\|chr11 (6669869-6670054)
	159-344, gnl\|Hg17\|chr2 (105124141-105124326)
	159-344, gnl\|Mm7\|chr1 (43102848-43103035)

	684-856, gnl\|bosTau2\|chr11 (6697508-6697680)
	684-856, gnl\|Hg17\|chr2 (105167377-105167549)
	684-856, gnl\|Mm7\|chr1 (43138827-43138999)

	959-1131, gnl\|bosTau2\|chr11 (6699326-6699498)
	959-1131, gnl\|Hg17\|chr2 (105172128-105172300)
	959-1131, gnl\|Mm7\|chr1 (43143679-43143851)

	ste (0.540833)
	nca (0.273748)
	che (0.272628)
	cut (0.169924)
	cki (0.165235)
	cje (0.165235)
	cst (0.140036)
	cov (0.132153)
	med (0.116252)
	cty (0.10408)
	ldo (0.0970026)