Ss1.1-Lng1-LNG010014C10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTTTACCTGCGCTCCTGTTCCGTCTCTCCGTGGATCGTCTCTCCGTGGATCGTCTACCC AGTCTCTCCATCTAGACCATCTCCAGTCCAACCCTCCCCTGCTCGCAGGCTCTGTCCAGC CACCCAACTCACCGTCTTGCCTCCTGTGCCAGCAATGGCGTCAGGACAACCCCTGCACGT GAGAACCCCTATTCGTGACAGTATGACCTTATCCAAAGTGGCTGGCACCACAGTCTATCT CAAGCTAGAAAGTTCCCAACCCTCCGGCTCTTTCAAGATTCGGGGCATCGGACACCTCTG CAAAACGTGGGCTGAGCGAGGCTGTGAACATTTCGTCTGCTCCTCTGCGGGTAATGCAGG CTTGGCAGCCGCCTATGCAGCCAGGAAGCTGGGCATCCCTGCCTTGATTGTCGTGCCCAG CACCACACCTGCCCTCACCATCCAGCGGCTCAAGAATGAGGGTGCCATGGTCAAGGTGGT GGGTGAGACCTTGGACGAGGCCATCAAGCTGGCCAAGGACCTGGTGAAGAACAACTCAAA CTGGGTCTACGTCCCTCCCTTTGACGACCCCCTCATCTGGGAAGGCCACGCTTCCATCGT AAAGGAGCTGAAGGAGACGATGAGTGCAAAGCCGGGGGCCATCGTGCTGGCAGTGGGGGG TGGAGGCCTATTGAGCGGAGTGGCCCAGGGGCTGCTGGAAGTGGGCTGGGGAGACGTGCC CATCCTCGCCATAGAGACCATCGGAGCCGACAGCTTCAACGCTTCCACCAAGGCCGGCAA GCTGGTCACCCTGCCCCGGATTACCAGTGTTGCCAAAGCGCTGGGCGTGACCACCGTGAC AGCTCAGGCCATGAAGGTGTTCCAGGAACAGCCTGTTTTCTCTGAAGTGGTCTCAGACCA GGAGGCTGTAGCCGCTCTTGAGAAGTTTGTGGATGATGAGAAGATCCTGGTAGAGCCTGC CTGTGGGGCAGCCCTGGCCGCCGTCTACAGCCAGGTGGTTCAGAAGCTGCAGGGAGAGGG GAAACTCTGCACCCCGCTGTCCTCCCTCGTGGTCATCGTCTGCGGGGGCAGCAACATCAG CCTGGCCCAGCTGCCAGCCCTCAAGGAACAGCTGGGCATGAAGAGCGGGCCTCTCCATTG AAGACCCACCACACCCCCTCCTCTGGAAGGGCTGGAGTTTTATCCAGAGCCTCACTGTAA ATACTCTTCTTGTATCTGCTGGGAGCCTCCTGGCCCAGGCCAGCCAGTAACCTTCCTGTT CTCATGATGGGTCAGCTGTACAGGTGCCAGAAGGTCAGCAGCCAGCAAGGCTGTGAACAG GACTCTGGTATCCAGGTGACAGCTCTCTGGCCACCCTTATCCACCCTGGATAGAGTGACA GCCACCCACATGGAACTCACCAGGTCCCCAGGGCAGGAGGGACAACACTGGGTATCCCCT TTTCTAATGTGTAAACGTTTTCATTGAAGAAAAACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTTTACCTGCGCTCCTGTTCCGTCTCTCCGTGGATCGTCTCTCCGTGGATCGTCTACCC AGTCTCTCCATCTAGACCATCTCCAGTCCAACCCTCCCCTGCTCGCAGGCTCTGTCCAGC CACCCAACTCACCGTCTTGCCTCCTGTGCCAGCAATGGCGTCAGGACAACCCCTGCACGT GAGAACCCCTATTCGTGACAGTATGACCTTATCCAAAGTGGCTGGCACCACAGTCTATCT CAAGCTAGAAAGTTCCCAACCCTCCGGCTCTTTCAAGATTCGGGGCATCGGACACCTCTG CAAAACGTGGGCTGAGCGAGGCTGTGAACATTTCGTCTGCTCCTCTGCGGGTAATGCAGG CTTGGCAGCCGCCTATGCAGCCAGGAAGCTGGGCATCCCTGCCTTGATTGTCGTGCCCAG CACCACACCTGCCCTCACCATCCAGCGGCTCAAGAATGAGGGTGCCATGGTCAAGGTGGT GGGTGAGACCTTGGACGAGGCCATCAAGCTGGCCAAGGACCTGGTGAAGAACAACTCAAA CTGGGTCTACGTCCCTCCCTTTGACGACCCCCTCATCTGGGAAGGCCACGCTTCCATCGT AAAGGAGCTGAAGGAGACGATGAGTGCAAAGCCGGGGGCCATCGTGCTGGCAGTGGGGGG TGGAGGCCTATTGAGCGGAGTGGCCCAGGGGCTGCTGGAAGTGGGCTGGGGAGACGTGCC CATCCTCGCCATAGAGACCATCGGAGCCGACAGCTTCAACGCTTCCACCAAGGCCGGCAA GCTGGTCACCCTGCCCCGGATTACCAGTGTTGCCAAAGCGCTGGGCGTGACCACCGTGAC AGCTCAGGCCATGAAGGTGTTCCAGGAACAGCCTGTTTTCTCTGAAGTGGTCTCAGACCA GGAGGCTGTAGCCGCTCTTGAGAAGTTTGTGGATGATGAGAAGATCCTGGTAGAGCCTGC CTGTGGGGCAGCCCTGGCCGCCGTCTACAGCCAGGTGGTTCAGAAGCTGCAGGGAGAGGG GAAACTCTGCACCCCGCTGTCCTCCCTCGTGGTCATCGTCTGCGGGGGCAGCAACATCAG CCTGGCCCAGCTGCCAGCCCTCAAGGAACAGCTGGGCATGAAGAGCGGGCCTCTCCATTG AAGACCCACCACACCCCCTCCTCTGGAAGGGCTGGAGTTTTATCCAGAGCCTCACTGTAA ATACTCTTCTTGTATCTGCTGGGAGCCTCCTGGCCCAGGCCAGCCAGTAACCTTCCTGTT CTCATGATGGGTCAGCTGTACAGGTGCCAGAAGGTCAGCAGCCAGCAAGGCTGTGAACAG GACTCTGGTATCCAGGTGACAGCTCTCTGGCCACCCTTATCCACCCTGGATAGAGTGACA GCCACCCACATGGAACTCACCAGGTCCCCAGGGCAGGAGGGACAACACTGGGTATCCCCT TTTCTAATGTGTAAACGTTTTCATTGAAGAAAAACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 347-465, - strand, RNAz p=0.728574 | |
| 347-487, - strand, RNAz p=0.940233 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 347-465, - strand, RNAz p=0.728574 | |
| 347-487, - strand, RNAz p=0.940233 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 149-305, gnl|bosTau2|chr17 (37996369-37996213) | |
| 149-305, gnl|canFam2|chr26 (13750993-13751147) | |
| 149-305, gnl|danRer3|chr12 (11731771-11731630) | |
| 149-305, gnl|fr1|chrUn (307052667-307052809) | |
| 149-305, gnl|galGal2|chr15 (12364607-12364754) | |
| 149-305, gnl|hg17|chr12 (112300071-112300226) | |
| 149-305, gnl|Hg17|chr12 (112300239-112300083) | |
| 149-305, gnl|loxAfr1|scaffold_25670 (15926-15771) | |
| 149-305, gnl|mm7|chr5 (119713231-119713076) | |
| 149-305, gnl|Mm7|chr5 (119713061-119713217) | |
| 149-305, gnl|monDom2|scaffold_110 (1760182-1760340) | |
| 149-305, gnl|panTro1|chr10 (115006624-115006779) | |
| 149-305, gnl|rheMac2|chr11 (114315159-114315314) | |
| 149-305, gnl|rn3|chr12 (37149291-37149446) | |
| 149-305, gnl|tetNig1|chrUn_random (98403429-98403287) | |
| 149-305, gnl|xenTro1|scaffold_891 (131968-132126) | |
| 347-487, gnl|bosTau2|chr17 (37995695-37995555) | |
| 347-487, gnl|canFam2|chr26 (13750144-13750303) | |
| 347-487, gnl|danRer3|chr12 (11734451-11734300) | |
| 347-487, gnl|echTel1|scaffold_291892 (40451-40605) | |
| 347-487, gnl|fr1|chrUn (325474080-325474236) | |
| 347-487, gnl|galGal2|chr15 (12364119-12364266) | |
| 347-487, gnl|hg17|chr12 (112299223-112299382) | |
| 347-487, gnl|Hg17|chr12 (112299372-112299232) | |
| 347-487, gnl|loxAfr1|scaffold_25670 (16730-16571) | |
| 347-487, gnl|mm7|chr5 (119714712-119714557) | |
| 347-487, gnl|Mm7|chr5 (119714561-119714701) | |
| 347-487, gnl|monDom2|scaffold_110 (1758282-1758441) | |
| 347-487, gnl|panTro1|chr10 (115005747-115005906) | |
| 347-487, gnl|rheMac2|chr11 (114314311-114314470) | |
| 347-487, gnl|rn3|chr12 (37147881-37148036) | |
| 347-487, gnl|tetNig1|chrUn_random (98404117-98403989) | |
| 347-487, gnl|xenTro1|scaffold_891 (129090-129245) | |
| 557-807, gnl|bosTau2|chr17 (37994619-37994367) | |
| 557-807, gnl|Hg17|chr12 (112297936-112297690) | |
| 557-807, gnl|Mm7|chr5 (119715422-119715666) | |
| 932-1326, gnl|bosTau2|chr17 (37992387-37991985) | |
| 932-1326, gnl|Hg17|chr12 (112293675-112293277) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 149-305, gnl|bosTau2|chr17 (37996369-37996213) | |
| 149-305, gnl|canFam2|chr26 (13750993-13751147) | |
| 149-305, gnl|danRer3|chr12 (11731771-11731630) | |
| 149-305, gnl|fr1|chrUn (307052667-307052809) | |
| 149-305, gnl|galGal2|chr15 (12364607-12364754) | |
| 149-305, gnl|hg17|chr12 (112300071-112300226) | |
| 149-305, gnl|Hg17|chr12 (112300239-112300083) | |
| 149-305, gnl|loxAfr1|scaffold_25670 (15926-15771) | |
| 149-305, gnl|mm7|chr5 (119713231-119713076) | |
| 149-305, gnl|Mm7|chr5 (119713061-119713217) | |
| 149-305, gnl|monDom2|scaffold_110 (1760182-1760340) | |
| 149-305, gnl|panTro1|chr10 (115006624-115006779) | |
| 149-305, gnl|rheMac2|chr11 (114315159-114315314) | |
| 149-305, gnl|rn3|chr12 (37149291-37149446) | |
| 149-305, gnl|tetNig1|chrUn_random (98403429-98403287) | |
| 149-305, gnl|xenTro1|scaffold_891 (131968-132126) | |
| 347-487, gnl|bosTau2|chr17 (37995695-37995555) | |
| 347-487, gnl|canFam2|chr26 (13750144-13750303) | |
| 347-487, gnl|danRer3|chr12 (11734451-11734300) | |
| 347-487, gnl|echTel1|scaffold_291892 (40451-40605) | |
| 347-487, gnl|fr1|chrUn (325474080-325474236) | |
| 347-487, gnl|galGal2|chr15 (12364119-12364266) | |
| 347-487, gnl|hg17|chr12 (112299223-112299382) | |
| 347-487, gnl|Hg17|chr12 (112299372-112299232) | |
| 347-487, gnl|loxAfr1|scaffold_25670 (16730-16571) | |
| 347-487, gnl|mm7|chr5 (119714712-119714557) | |
| 347-487, gnl|Mm7|chr5 (119714561-119714701) | |
| 347-487, gnl|monDom2|scaffold_110 (1758282-1758441) | |
| 347-487, gnl|panTro1|chr10 (115005747-115005906) | |
| 347-487, gnl|rheMac2|chr11 (114314311-114314470) | |
| 347-487, gnl|rn3|chr12 (37147881-37148036) | |
| 347-487, gnl|tetNig1|chrUn_random (98404117-98403989) | |
| 347-487, gnl|xenTro1|scaffold_891 (129090-129245) | |
| 557-807, gnl|bosTau2|chr17 (37994619-37994367) | |
| 557-807, gnl|Hg17|chr12 (112297936-112297690) | |
| 557-807, gnl|Mm7|chr5 (119715422-119715666) | |
| 932-1326, gnl|bosTau2|chr17 (37992387-37991985) | |
| 932-1326, gnl|Hg17|chr12 (112293675-112293277) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| csp (0.322373) | |
| cbl (0.229595) | |
| nlu (0.191681) | |
| med (0.116252) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.322373) | |
| cbl (0.229595) | |
| nlu (0.191681) | |
| med (0.116252) |