Ss1.1-Lng1-LNG010014E07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAACACTAACCATGGCGGCGCCGGGAAGCGACCCGCTGGTGGGCTTAAGGCGGGAGTGAT CTTTTGAGCTGTGCCGGAAGCCTAGAAGAGCGCTTGTAGACGTCAGTACGACAACTCACG TAATCTGGGAGCAAAACTCCAGAGGCTTGCGAGCCAAGAGACTCCTGAGACGTGAAGTAT TATCTGCGACCCGTGCTGTCACTTCAGCCCCGGAGCGCGGAGCCCTCAGCCAGGAGGCGC AGCTGGGCGGCCCCAGGCCTCGGCTTCCGTAATGAGAGCCCAGAGCCACTTTCTGTGTCA CAGCTTCACAGATTCCTGTAGGCAATGGAAACTGATCTCAATTCCCAGGACAGAAAGGAC CTGGACAAGTTCATTAAGTTTTTTGCCCTTAAGACTGTCCAAGTGATTGTCCAGGCTCGA CTCGGTGAAAAGATTTGTACTCGTTCATCTTCATCCCCAACGGGTTCAGATTGGTTCAAT TTAGCAATCAAAGACATCCCAGAGGTTACACATGAAGCAAAGAAGGCACTGGCAGGGCAG CTGCCTGCTGTCGGGAGATCTATGTGTGTGGAGATCTCACTCAAGACTTCTGAGGGAGAT TCCATGGAGTTAGAAATCTGGTGTCTGGAAATGAACGAAAAGTGTGATAAGGAGATCAAG GTTTCCTATGCAGTGTACAACAGACTGTCATTGCTTCTGAAGTCTCTACTTGCTATAACC AGGGTGACACCAGCTTACAGACTCTCCAGAAAACAAGGGCATGAATATGTCATATTGTAC AGAATATATTTCGGGGAAGTTCAGCTGAATGGCTTAGGAGAAGGTTTCCAGACAGTTCGT GTTGGGACAGTGGGCACCCCTGTAGGCACCATCACTCTTTCCTGTGCTTATCGAATTAAC TTGGCATTCATGTCCACCAGGCACTTTGAGAGGACCCCACCTATCATGGGGATTATCATT GATCACTTTGTGGACCGTCCCTATCCCAGCTCCTCGCCCATGCATCCCTGCAATTACAGA ACCACCGGTGAGGACACGGGAGTAACATATCCTTCTGTGGAAGATTCTCAAGAAGTGTGT ACCACCTCCTTTTCCACTTCCCCTCCTTCCCAGCTAATGGTTCCTGGAAAGGAAGGTGGG GTACCCCTTGCTCCCAACCAGCCTGCCCATGGTGCCCAGGCAGACCAGGAGAGATTGGCA ACCTACACCCCTTCTGATGGGGCCCACTGTGCTGCCACACCTTCCAGCAGTGAGGACACT GAAACTGTCTCAAACAGCAGTGAGGGGCGGGCCTCCCCCCATGACGTTCTGGAGACCATC TTTGTCCGGAAAGTGGGGGCTTTTGTCAACAAACCCATCAACCAGGTGACCCTGACCAGT TTGGACATACCCTTTGCCATGTTTGCTCTAAGAATTTGGAGCTAGAGGATGCTGATCCCA TGGGCAGCCTGCACTCTGATGGCTCCAGCGGGGGCAGCAGTGGCAATACCCAGGATGACT TTGTTATGATCGACTTTAAACCGGCTTTTTCTAAAGATGACATTCTTCCAATGGACTTGG GGACCTTCTATCGTGAATTTCAGAACCCTCCTCAGCTGAGCAGCCTCTCCATAGATATTG GGGCACAGTCCATGGCTGAGGACTTGGACTCACTACCAGAGAAGCTGGCCGTGCACGAGA AGAATGTCCGAGAATTCGATGCCTTTGTAGAAACCCTGCAGTAAAAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAACACTAACCATGGCGGCGCCGGGAAGCGACCCGCTGGTGGGCTTAAGGCGGGAGTGAT CTTTTGAGCTGTGCCGGAAGCCTAGAAGAGCGCTTGTAGACGTCAGTACGACAACTCACG TAATCTGGGAGCAAAACTCCAGAGGCTTGCGAGCCAAGAGACTCCTGAGACGTGAAGTAT TATCTGCGACCCGTGCTGTCACTTCAGCCCCGGAGCGCGGAGCCCTCAGCCAGGAGGCGC AGCTGGGCGGCCCCAGGCCTCGGCTTCCGTAATGAGAGCCCAGAGCCACTTTCTGTGTCA CAGCTTCACAGATTCCTGTAGGCAATGGAAACTGATCTCAATTCCCAGGACAGAAAGGAC CTGGACAAGTTCATTAAGTTTTTTGCCCTTAAGACTGTCCAAGTGATTGTCCAGGCTCGA CTCGGTGAAAAGATTTGTACTCGTTCATCTTCATCCCCAACGGGTTCAGATTGGTTCAAT TTAGCAATCAAAGACATCCCAGAGGTTACACATGAAGCAAAGAAGGCACTGGCAGGGCAG CTGCCTGCTGTCGGGAGATCTATGTGTGTGGAGATCTCACTCAAGACTTCTGAGGGAGAT TCCATGGAGTTAGAAATCTGGTGTCTGGAAATGAACGAAAAGTGTGATAAGGAGATCAAG GTTTCCTATGCAGTGTACAACAGACTGTCATTGCTTCTGAAGTCTCTACTTGCTATAACC AGGGTGACACCAGCTTACAGACTCTCCAGAAAACAAGGGCATGAATATGTCATATTGTAC AGAATATATTTCGGGGAAGTTCAGCTGAATGGCTTAGGAGAAGGTTTCCAGACAGTTCGT GTTGGGACAGTGGGCACCCCTGTAGGCACCATCACTCTTTCCTGTGCTTATCGAATTAAC TTGGCATTCATGTCCACCAGGCACTTTGAGAGGACCCCACCTATCATGGGGATTATCATT GATCACTTTGTGGACCGTCCCTATCCCAGCTCCTCGCCCATGCATCCCTGCAATTACAGA ACCACCGGTGAGGACACGGGAGTAACATATCCTTCTGTGGAAGATTCTCAAGAAGTGTGT ACCACCTCCTTTTCCACTTCCCCTCCTTCCCAGCTAATGGTTCCTGGAAAGGAAGGTGGG GTACCCCTTGCTCCCAACCAGCCTGCCCATGGTGCCCAGGCAGACCAGGAGAGATTGGCA ACCTACACCCCTTCTGATGGGGCCCACTGTGCTGCCACACCTTCCAGCAGTGAGGACACT GAAACTGTCTCAAACAGCAGTGAGGGGCGGGCCTCCCCCCATGACGTTCTGGAGACCATC TTTGTCCGGAAAGTGGGGGCTTTTGTCAACAAACCCATCAACCAGGTGACCCTGACCAGT TTGGACATACCCTTTGCCATGTTTGCTCTAAGAATTTGGAGCTAGAGGATGCTGATCCCA TGGGCAGCCTGCACTCTGATGGCTCCAGCGGGGGCAGCAGTGGCAATACCCAGGATGACT TTGTTATGATCGACTTTAAACCGGCTTTTTCTAAAGATGACATTCTTCCAATGGACTTGG GGACCTTCTATCGTGAATTTCAGAACCCTCCTCAGCTGAGCAGCCTCTCCATAGATATTG GGGCACAGTCCATGGCTGAGGACTTGGACTCACTACCAGAGAAGCTGGCCGTGCACGAGA AGAATGTCCGAGAATTCGATGCCTTTGTAGAAACCCTGCAGTAAAAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 194-311, - strand, RNAz p=0.577954 | |
| 1112-1230, - strand, RNAz p=0.730254 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 194-311, - strand, RNAz p=0.577954 | |
| 1112-1230, - strand, RNAz p=0.730254 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 1-311, gnl|bosTau2|chr15 (48400524-48400836) | |
| 1-311, gnl|Hg17|chr11 (46595704-46596016) | |
| 1-311, gnl|Mm7|chr2 (91561253-91560963) | |
| 474-595, gnl|bosTau2|chr15 (48421184-48421305) | |
| 474-595, gnl|Hg17|chr11 (46623995-46624116) | |
| 474-595, gnl|Mm7|chr2 (91543264-91543143) | |
| 642-782, gnl|bosTau2|chr15 (48424754-48424894) | |
| 642-782, gnl|canFam2|chr18 (45889662-45889475) | |
| 642-782, gnl|danRer3|chr7 (29024971-29024794) | |
| 642-782, gnl|dasNov1|scaffold_6698 (44563-44750) | |
| 642-782, gnl|echTel1|scaffold_318661 (72193-72000) | |
| 642-782, gnl|fr1|chrUn (251740421-251740273) | |
| 642-782, gnl|galGal2|chr5 (20783759-20783610) | |
| 642-782, gnl|hg17|chr11 (46628300-46628487) | |
| 642-782, gnl|Hg17|chr11 (46628303-46628443) | |
| 642-782, gnl|loxAfr1|scaffold_80 (50042-49852) | |
| 642-782, gnl|mm7|chr2 (91539502-91539322) | |
| 642-782, gnl|Mm7|chr2 (91539497-91539357) | |
| 642-782, gnl|monDom2|scaffold_33 (12627273-12627462) | |
| 642-782, gnl|oryCun1|scaffold_210921 (90126-89939) | |
| 642-782, gnl|panTro1|chr9 (47146984-47147171) | |
| 642-782, gnl|rheMac2|chr14 (25471687-25471500) | |
| 642-782, gnl|rn3|chr3 (75965768-75965587) | |
| 642-782, gnl|tetNig1|chr3 (7614862-7615012) | |
| 642-782, gnl|xenTro1|scaffold_76 (2146150-2146314) | |
| 1112-1259, gnl|bosTau2|chr15 (48434266-48434414) | |
| 1112-1259, gnl|Hg17|chr11 (46643507-46643655) | |
| 1112-1259, gnl|Mm7|chr2 (91532413-91532262) | |
| 1518-1647, gnl|bosTau2|chr15 (48437910-48438039) | |
| 1518-1647, gnl|canFam2|chr18 (45873121-45872941) | |
| 1518-1647, gnl|danRer3|chr7 (29016527-29016360) | |
| 1518-1647, gnl|echTel1|scaffold_318661 (59787-59609) | |
| 1518-1647, gnl|fr1|chrUn (251737242-251737094) | |
| 1518-1647, gnl|galGal2|chr5 (20773347-20773205) | |
| 1518-1647, gnl|hg17|chr11 (46647529-46647694) | |
| 1518-1647, gnl|Hg17|chr11 (46647530-46647659) | |
| 1518-1647, gnl|loxAfr1|scaffold_80 (35763-35584) | |
| 1518-1647, gnl|mm7|chr2 (91529574-91529395) | |
| 1518-1647, gnl|Mm7|chr2 (91529571-91529442) | |
| 1518-1647, gnl|monDom2|scaffold_33 (12639931-12640082) | |
| 1518-1647, gnl|oryCun1|scaffold_193890 (9037-9154) | |
| 1518-1647, gnl|panTro1|chr9 (47166248-47166413) | |
| 1518-1647, gnl|rheMac2|chr14 (25451607-25451442) | |
| 1518-1647, gnl|rn3|chr3 (75956017-75955839) | |
| 1518-1647, gnl|tetNig1|chr3 (7617792-7617941) | |
| 1518-1647, gnl|xenTro1|scaffold_76 (2155124-2155277) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-311, gnl|bosTau2|chr15 (48400524-48400836) | |
| 1-311, gnl|Hg17|chr11 (46595704-46596016) | |
| 1-311, gnl|Mm7|chr2 (91561253-91560963) | |
| 474-595, gnl|bosTau2|chr15 (48421184-48421305) | |
| 474-595, gnl|Hg17|chr11 (46623995-46624116) | |
| 474-595, gnl|Mm7|chr2 (91543264-91543143) | |
| 642-782, gnl|bosTau2|chr15 (48424754-48424894) | |
| 642-782, gnl|canFam2|chr18 (45889662-45889475) | |
| 642-782, gnl|danRer3|chr7 (29024971-29024794) | |
| 642-782, gnl|dasNov1|scaffold_6698 (44563-44750) | |
| 642-782, gnl|echTel1|scaffold_318661 (72193-72000) | |
| 642-782, gnl|fr1|chrUn (251740421-251740273) | |
| 642-782, gnl|galGal2|chr5 (20783759-20783610) | |
| 642-782, gnl|hg17|chr11 (46628300-46628487) | |
| 642-782, gnl|Hg17|chr11 (46628303-46628443) | |
| 642-782, gnl|loxAfr1|scaffold_80 (50042-49852) | |
| 642-782, gnl|mm7|chr2 (91539502-91539322) | |
| 642-782, gnl|Mm7|chr2 (91539497-91539357) | |
| 642-782, gnl|monDom2|scaffold_33 (12627273-12627462) | |
| 642-782, gnl|oryCun1|scaffold_210921 (90126-89939) | |
| 642-782, gnl|panTro1|chr9 (47146984-47147171) | |
| 642-782, gnl|rheMac2|chr14 (25471687-25471500) | |
| 642-782, gnl|rn3|chr3 (75965768-75965587) | |
| 642-782, gnl|tetNig1|chr3 (7614862-7615012) | |
| 642-782, gnl|xenTro1|scaffold_76 (2146150-2146314) | |
| 1112-1259, gnl|bosTau2|chr15 (48434266-48434414) | |
| 1112-1259, gnl|Hg17|chr11 (46643507-46643655) | |
| 1112-1259, gnl|Mm7|chr2 (91532413-91532262) | |
| 1518-1647, gnl|bosTau2|chr15 (48437910-48438039) | |
| 1518-1647, gnl|canFam2|chr18 (45873121-45872941) | |
| 1518-1647, gnl|danRer3|chr7 (29016527-29016360) | |
| 1518-1647, gnl|echTel1|scaffold_318661 (59787-59609) | |
| 1518-1647, gnl|fr1|chrUn (251737242-251737094) | |
| 1518-1647, gnl|galGal2|chr5 (20773347-20773205) | |
| 1518-1647, gnl|hg17|chr11 (46647529-46647694) | |
| 1518-1647, gnl|Hg17|chr11 (46647530-46647659) | |
| 1518-1647, gnl|loxAfr1|scaffold_80 (35763-35584) | |
| 1518-1647, gnl|mm7|chr2 (91529574-91529395) | |
| 1518-1647, gnl|Mm7|chr2 (91529571-91529442) | |
| 1518-1647, gnl|monDom2|scaffold_33 (12639931-12640082) | |
| 1518-1647, gnl|oryCun1|scaffold_193890 (9037-9154) | |
| 1518-1647, gnl|panTro1|chr9 (47166248-47166413) | |
| 1518-1647, gnl|rheMac2|chr14 (25451607-25451442) | |
| 1518-1647, gnl|rn3|chr3 (75956017-75955839) | |
| 1518-1647, gnl|tetNig1|chr3 (7617792-7617941) | |
| 1518-1647, gnl|xenTro1|scaffold_76 (2155124-2155277) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |