Ss1.1-Lng1-LNG010014H01.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAGAGCAGTTTATAGCTCTCAGCACAAGCTATCCTTTCCACTCCTCTGGCAGATCGCTGT TAGCTTTCCCGCCGAGATCCGGAGCTCTCCTCCAGCTGTTGGAGGAAAGACAGGAAAGAG CTTATTTTTCTTTTGAAATACCTTGGCACAACCAGCAAGGGAACATCTTGTCGAACATTT AATAGAGAGTTGAAAAGTGAAATAATTTTAATTCATTGCAAAGGGCCCTTTGATTCGGGG TTTTGTTTTTCACTCCTGCCCCCTGCCCCGTTTCTAACTCTCAAGTCAACCGAGCCCAAA CATGGTGATGTTCAAGAAGATCAAGTCTTTTGAGGTGGTCTTTAACGACCCCGAAAAGGT GTACGGCTGTGGGGAGAAGGTGGCTGGCCGGGTGATAGTGGAGGTGTGTGAAGTCACTCG AATCAAAGCTGTCAGGATCCTGGCTTGTGGAGTGGCCAAAGTCCTGTGGATGCAGGGATC CCAGCAGTGCAAACAGACCTTGGACTACCTGCGCTATGAAGACACTCTTCTCCTGGACGA CCACCCAACAGGGGAGAATGAGATGGTGATCATGAGACCTGGAAACAAATATGAATACAA GTTTGGCTTTGAGCTTCCTCAGGGGCCTCTGGGAACATCTTTCAAAGGAAAATATGGGTG TGTAGACTACTGGGTGAAGGCTTTTCTTGATCGCCCAAGCCAGCCAACTCAAGAGACAAA AAAACACTTCGAAGTGATGGATCTAGTGGATGTCAATACCCCTGATTTAATGGCACCTGT GTCTGCTAAAAAGGAGAAGAAAGTTTCCTGCATGTTCATTCCTGATGGCCGGGTGTCTGT CTCTGCTCGAATCGACAGAAAAGGGTTCTGTGAAGGTGATGAGATTAACATCCATGCTGA TTTTGAGAATACATGTTCCCGCATTGTGGTGCCCAAAGCTGCCATTGTAGCCCGCCACAC TTACCTTGCCAATGGCCAAACCAAAGTACTGACGCAGAAGTTGTCATCGGTCAGAGGCAA TCACATTATCTCAGGAACCTGTGCATCATGGCGTGGCAAGAGCCTTCGGGTGCAGAAGAT CAGGCCTTCTATCTTGGGCTGCAACATCCTTCGAGTTGAATACTTCTTACTGATCTACGT TAGTGTCCCTGGCTCCAAGAAGGTCATTCTTGACCTGCCGCTGGTAATTGGCAGCAGGTC AGGCCTCAGCAGCCGGACGTCCAGCATGGCCAGCCGAACCAGCTCCGAGATGAGTTGGGT AGATCTAAACATCCCTGATACCCCCGAAGCTCCTCCATGCTATATGGATATCATTCCTGA AGATCACCGATTGGAGAGCCCCACCACTCCTCTGCTAGATGACACAGATGGCTCTCAAGA CAGCCCTATCTTTATGTATGCTCCTGAGTTTAAGTTCATGCCACCACCTACTTACAGTGA GGTGGATCCCTGCATCCTCAACAACAACGTGCAGTGAACATGTGGAAGGAAAGAAGCAGC TATACCTACTTCTTTCTTTTCACCTCTCTTCCTGGACTGACTTTTTAGGAGACTCAACAG TCTCTGCAGTGGGGTACAGATCCACCCCAGCCTCTGACTCTCCGGTGTAGGAGGTGATCA TCAGGCAATCTCTTGGGCCTTAAAGGGTGCGCAGTCGTCCTCAGCCAGTGAGATGTTGTG ACAAGGGTTTTTTTGCTGGATGGGTTTAAAAACACAGACAAATTTAGGCCCATTCCATTT TCTCAGATCTTTTTTGAGAATTGAGGCATTTTAAATAAGGGGTAGAAATGGCCTCCTGGT GTGGTCTTCCCAAGGTTTTATGGAGGGGATTTCAGACTGTTATAACAATAGATCTTGAAC CTCTGCCATGTGGAGAAAAGCCAATTTAGCAAACTAGAAGAATGAAAAGGAAAAAAATCA TGGCCAAAACTTTGGGAAAAAGATGTTCTTAAAATCATTGTTCCCCTTTGTTTGTGCACT TATAGATAAAAGAAAACAAAAAAGAAAAATCCTCCAGAGCTTATTTGGTTTAGAGTGAGC TTCCCATGTGAATTAAAGGGAAGAAGCTCTAAAGTTGTCTTTGTTTAGAAAGTGCTTTAA TGTGGCGTAAAGCAGTAGTAACTATGCCCCACCAAAGGTCTTAAAAAGCCATTTTTAGAG CCTATTGCACTGTGTTCTTCTGTTGGCAAACATTTTCATGTGGGAAAATGTGTTTTTCTT CTCACATGACTCCTTGGAATTGATTCTGAGGTGATGGTCTTAGCACTTTAGTTTGTGTCA AATTTTTTTCCCCTCTATCTCAGATGTAAGCCAAAATTGGTCTACTGTGTCTCTGGGGTA AGCACAATGACAAAAAAAAAAAAAAAAAAAAAGTGTTTCTCACTACTTTTGAGACTTTGT CCCAGTGTACAGAATTCTGCAATTCTGACACTCTAATTATATGAGAAGGGTTGCTGCTAT CAGCCTTGCCTACTGTGACATCTCCAAAGCCAAGGAAGAACTCGATCAAAATGCCCCAAC ACTGTGATTAGAGCATCCAGATGGTGCCATGAGAAACTAGAGGGCAGGTTTTCACAAAAG CCCCTAGGGCTCCCTTCCCCCAGTGTTAGGAGACAGGGATGTTGATAGCCCCTCTCTCAC TGCAGCCACCAGCACTTGGTCAGTCATTCTCAGCCTTAGCACTTTGTTCGCTGTCCTGTG TCAGAGCCCTGAGCTCTACCCTCTCCTGAGAAAGTATGTGGGCTAAAAGTGGTGTCATTT TTTTTGTTGTTGTTTTTTAATTGTATATCTTTTTGTATGACAAAAACTATATTTTGTACT TAACCAGATATATTTTTCACCCCAGGTGGGGGTATTCTTTGTAAAAAAGATAAATAAAGT TTTTTTAATGGAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAGAGCAGTTTATAGCTCTCAGCACAAGCTATCCTTTCCACTCCTCTGGCAGATCGCTGT TAGCTTTCCCGCCGAGATCCGGAGCTCTCCTCCAGCTGTTGGAGGAAAGACAGGAAAGAG CTTATTTTTCTTTTGAAATACCTTGGCACAACCAGCAAGGGAACATCTTGTCGAACATTT AATAGAGAGTTGAAAAGTGAAATAATTTTAATTCATTGCAAAGGGCCCTTTGATTCGGGG TTTTGTTTTTCACTCCTGCCCCCTGCCCCGTTTCTAACTCTCAAGTCAACCGAGCCCAAA CATGGTGATGTTCAAGAAGATCAAGTCTTTTGAGGTGGTCTTTAACGACCCCGAAAAGGT GTACGGCTGTGGGGAGAAGGTGGCTGGCCGGGTGATAGTGGAGGTGTGTGAAGTCACTCG AATCAAAGCTGTCAGGATCCTGGCTTGTGGAGTGGCCAAAGTCCTGTGGATGCAGGGATC CCAGCAGTGCAAACAGACCTTGGACTACCTGCGCTATGAAGACACTCTTCTCCTGGACGA CCACCCAACAGGGGAGAATGAGATGGTGATCATGAGACCTGGAAACAAATATGAATACAA GTTTGGCTTTGAGCTTCCTCAGGGGCCTCTGGGAACATCTTTCAAAGGAAAATATGGGTG TGTAGACTACTGGGTGAAGGCTTTTCTTGATCGCCCAAGCCAGCCAACTCAAGAGACAAA AAAACACTTCGAAGTGATGGATCTAGTGGATGTCAATACCCCTGATTTAATGGCACCTGT GTCTGCTAAAAAGGAGAAGAAAGTTTCCTGCATGTTCATTCCTGATGGCCGGGTGTCTGT CTCTGCTCGAATCGACAGAAAAGGGTTCTGTGAAGGTGATGAGATTAACATCCATGCTGA TTTTGAGAATACATGTTCCCGCATTGTGGTGCCCAAAGCTGCCATTGTAGCCCGCCACAC TTACCTTGCCAATGGCCAAACCAAAGTACTGACGCAGAAGTTGTCATCGGTCAGAGGCAA TCACATTATCTCAGGAACCTGTGCATCATGGCGTGGCAAGAGCCTTCGGGTGCAGAAGAT CAGGCCTTCTATCTTGGGCTGCAACATCCTTCGAGTTGAATACTTCTTACTGATCTACGT TAGTGTCCCTGGCTCCAAGAAGGTCATTCTTGACCTGCCGCTGGTAATTGGCAGCAGGTC AGGCCTCAGCAGCCGGACGTCCAGCATGGCCAGCCGAACCAGCTCCGAGATGAGTTGGGT AGATCTAAACATCCCTGATACCCCCGAAGCTCCTCCATGCTATATGGATATCATTCCTGA AGATCACCGATTGGAGAGCCCCACCACTCCTCTGCTAGATGACACAGATGGCTCTCAAGA CAGCCCTATCTTTATGTATGCTCCTGAGTTTAAGTTCATGCCACCACCTACTTACAGTGA GGTGGATCCCTGCATCCTCAACAACAACGTGCAGTGAACATGTGGAAGGAAAGAAGCAGC TATACCTACTTCTTTCTTTTCACCTCTCTTCCTGGACTGACTTTTTAGGAGACTCAACAG TCTCTGCAGTGGGGTACAGATCCACCCCAGCCTCTGACTCTCCGGTGTAGGAGGTGATCA TCAGGCAATCTCTTGGGCCTTAAAGGGTGCGCAGTCGTCCTCAGCCAGTGAGATGTTGTG ACAAGGGTTTTTTTGCTGGATGGGTTTAAAAACACAGACAAATTTAGGCCCATTCCATTT TCTCAGATCTTTTTTGAGAATTGAGGCATTTTAAATAAGGGGTAGAAATGGCCTCCTGGT GTGGTCTTCCCAAGGTTTTATGGAGGGGATTTCAGACTGTTATAACAATAGATCTTGAAC CTCTGCCATGTGGAGAAAAGCCAATTTAGCAAACTAGAAGAATGAAAAGGAAAAAAATCA TGGCCAAAACTTTGGGAAAAAGATGTTCTTAAAATCATTGTTCCCCTTTGTTTGTGCACT TATAGATAAAAGAAAACAAAAAAGAAAAATCCTCCAGAGCTTATTTGGTTTAGAGTGAGC TTCCCATGTGAATTAAAGGGAAGAAGCTCTAAAGTTGTCTTTGTTTAGAAAGTGCTTTAA TGTGGCGTAAAGCAGTAGTAACTATGCCCCACCAAAGGTCTTAAAAAGCCATTTTTAGAG CCTATTGCACTGTGTTCTTCTGTTGGCAAACATTTTCATGTGGGAAAATGTGTTTTTCTT CTCACATGACTCCTTGGAATTGATTCTGAGGTGATGGTCTTAGCACTTTAGTTTGTGTCA AATTTTTTTCCCCTCTATCTCAGATGTAAGCCAAAATTGGTCTACTGTGTCTCTGGGGTA AGCACAATGACAAAAAAAAAAAAAAAAAAAAAGTGTTTCTCACTACTTTTGAGACTTTGT CCCAGTGTACAGAATTCTGCAATTCTGACACTCTAATTATATGAGAAGGGTTGCTGCTAT CAGCCTTGCCTACTGTGACATCTCCAAAGCCAAGGAAGAACTCGATCAAAATGCCCCAAC ACTGTGATTAGAGCATCCAGATGGTGCCATGAGAAACTAGAGGGCAGGTTTTCACAAAAG CCCCTAGGGCTCCCTTCCCCCAGTGTTAGGAGACAGGGATGTTGATAGCCCCTCTCTCAC TGCAGCCACCAGCACTTGGTCAGTCATTCTCAGCCTTAGCACTTTGTTCGCTGTCCTGTG TCAGAGCCCTGAGCTCTACCCTCTCCTGAGAAAGTATGTGGGCTAAAAGTGGTGTCATTT TTTTTGTTGTTGTTTTTTAATTGTATATCTTTTTGTATGACAAAAACTATATTTTGTACT TAACCAGATATATTTTTCACCCCAGGTGGGGGTATTCTTTGTAAAAAAGATAAATAAAGT TTTTTTAATGGAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1464-1732, - strand, RNAz p=0.999905 | |
| 2361-2480, + strand, RNAz p=0.831544 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1464-1732, - strand, RNAz p=0.999905 | |
| 2361-2480, + strand, RNAz p=0.831544 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_006472, + |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-552, gnl|bosTau2|chr3 (15333432-15333970) | |
| 1-552, gnl|Hg17|chr1 (142927509-142928097) | |
| 1-552, gnl|Mm7|chr3 (96431884-96432436) | |
| 624-773, gnl|bosTau2|chr3 (15334650-15334799) | |
| 624-773, gnl|canFam2|chr17 (61858238-61858069) | |
| 624-773, gnl|danRer3|chr16 (32812308-32812490) | |
| 624-773, gnl|dasNov1|scaffold_20783 (6765-6934) | |
| 624-773, gnl|echTel1|scaffold_322503 (83393-83562) | |
| 624-773, gnl|fr1|chrUn (152159772-152159605) | |
| 624-773, gnl|hg17|chr1 (142928810-142928979) | |
| 624-773, gnl|Hg17|chr1 (142928821-142928970) | |
| 624-773, gnl|loxAfr1|scaffold_53142 (29774-29943) | |
| 624-773, gnl|mm7|chr3 (96433008-96433177) | |
| 624-773, gnl|Mm7|chr3 (96433019-96433168) | |
| 624-773, gnl|monDom2|scaffold_44 (2449204-2449037) | |
| 624-773, gnl|oryCun1|scaffold_213552 (122165-121994) | |
| 624-773, gnl|panTro1|chr1_random (17682688-17682519) | |
| 624-773, gnl|rheMac2|chr1 (126198368-126198199) | |
| 624-773, gnl|rn3|chr2 (191320701-191320870) | |
| 624-773, gnl|tetNig1|chrUn_random (109912044-109911875) | |
| 624-773, gnl|xenTro1|scaffold_335 (1003320-1003486) | |
| 874-1132, gnl|bosTau2|chr3 (15335241-15335499) | |
| 874-1132, gnl|Hg17|chr1 (142929311-142929569) | |
| 874-1132, gnl|Mm7|chr3 (96433537-96433795) | |
| 1440-2878, gnl|bosTau2|chr3 (15336156-15337593) | |
| 1440-2878, gnl|Hg17|chr1 (142930225-142931643) | |
| 1440-2878, gnl|Mm7|chr3 (96434427-96435795) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-552, gnl|bosTau2|chr3 (15333432-15333970) | |
| 1-552, gnl|Hg17|chr1 (142927509-142928097) | |
| 1-552, gnl|Mm7|chr3 (96431884-96432436) | |
| 624-773, gnl|bosTau2|chr3 (15334650-15334799) | |
| 624-773, gnl|canFam2|chr17 (61858238-61858069) | |
| 624-773, gnl|danRer3|chr16 (32812308-32812490) | |
| 624-773, gnl|dasNov1|scaffold_20783 (6765-6934) | |
| 624-773, gnl|echTel1|scaffold_322503 (83393-83562) | |
| 624-773, gnl|fr1|chrUn (152159772-152159605) | |
| 624-773, gnl|hg17|chr1 (142928810-142928979) | |
| 624-773, gnl|Hg17|chr1 (142928821-142928970) | |
| 624-773, gnl|loxAfr1|scaffold_53142 (29774-29943) | |
| 624-773, gnl|mm7|chr3 (96433008-96433177) | |
| 624-773, gnl|Mm7|chr3 (96433019-96433168) | |
| 624-773, gnl|monDom2|scaffold_44 (2449204-2449037) | |
| 624-773, gnl|oryCun1|scaffold_213552 (122165-121994) | |
| 624-773, gnl|panTro1|chr1_random (17682688-17682519) | |
| 624-773, gnl|rheMac2|chr1 (126198368-126198199) | |
| 624-773, gnl|rn3|chr2 (191320701-191320870) | |
| 624-773, gnl|tetNig1|chrUn_random (109912044-109911875) | |
| 624-773, gnl|xenTro1|scaffold_335 (1003320-1003486) | |
| 874-1132, gnl|bosTau2|chr3 (15335241-15335499) | |
| 874-1132, gnl|Hg17|chr1 (142929311-142929569) | |
| 874-1132, gnl|Mm7|chr3 (96433537-96433795) | |
| 1440-2878, gnl|bosTau2|chr3 (15336156-15337593) | |
| 1440-2878, gnl|Hg17|chr1 (142930225-142931643) | |
| 1440-2878, gnl|Mm7|chr3 (96434427-96435795) |
| Expressed library(ies): 84 entry(ies) | More info |
| Expressed library(ies): 84 entry(ies) | Help | Less info |
| bla (5.09823) | |
| che (4.77099) | |
| cbl (4.2475) | |
| hea (3.88548) | |
| sme (3.66524) | |
| fat (2.94855) | |
| ova (2.84091) | |
| cki (2.47852) | |
| ldo (2.13406) | |
| mga (2.08267) | |
| ssp (1.89728) | |
| tbr (1.85014) | |
| rec (1.7307) | |
| cmu (1.67754) | |
| ste (1.48729) | |
| spl (1.43184) | |
| med (1.39502) | |
| pty (1.28443) | |
| sug (1.27291) | |
| csk (1.26671) | |
| cut (1.18946) | |
| ski (1.17388) | |
| liv (1.17027) | |
| cje (1.15664) | |
| jca (1.1396) | |
| cga (1.11638) | |
| lun (1.05342) | |
| isp (1.05263) | |
| mas (1.05152) | |
| cty (1.0408) | |
| hlv (0.974795) | |
| lyg (0.931718) | |
| sto (0.899119) | |
| sin (0.874738) | |
| tra (0.861645) | |
| nms (0.855432) | |
| mcp (0.853242) | |
| amn (0.835422) | |
| nco (0.808669) | |
| aor (0.781097) | |
| thg (0.760746) | |
| cag (0.755972) | |
| bfe (0.749288) | |
| nep (0.7357) | |
| lnt (0.711541) | |
| eye (0.682012) | |
| vin (0.665115) | |
| nmm (0.664011) | |
| csp (0.644745) | |
| cly (0.603209) | |
| clu (0.598229) | |
| pgl (0.592417) | |
| col (0.585023) | |
| cst (0.560146) | |
| nca (0.547495) | |
| gul (0.532765) | |
| cov (0.528611) | |
| ill (0.526778) | |
| eje (0.494169) | |
| eep (0.490256) | |
| mgp (0.461361) | |
| ctl (0.459207) | |
| lin (0.436808) | |
| kid (0.389206) | |
| sag (0.36543) | |
| nje (0.33184) | |
| jej (0.296765) | |
| cte (0.29274) | |
| pla (0.267344) | |
| pan (0.23596) | |
| ece (0.229305) | |
| spc (0.226732) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| nlu (0.191681) | |
| mgm (0.180343) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| hyp (0.142837) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ecc (0.115035) |
| Expressed library(ies): 84 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bla (5.09823) | |
| che (4.77099) | |
| cbl (4.2475) | |
| hea (3.88548) | |
| sme (3.66524) | |
| fat (2.94855) | |
| ova (2.84091) | |
| cki (2.47852) | |
| ldo (2.13406) | |
| mga (2.08267) | |
| ssp (1.89728) | |
| tbr (1.85014) | |
| rec (1.7307) | |
| cmu (1.67754) | |
| ste (1.48729) | |
| spl (1.43184) | |
| med (1.39502) | |
| pty (1.28443) | |
| sug (1.27291) | |
| csk (1.26671) | |
| cut (1.18946) | |
| ski (1.17388) | |
| liv (1.17027) | |
| cje (1.15664) | |
| jca (1.1396) | |
| cga (1.11638) | |
| lun (1.05342) | |
| isp (1.05263) | |
| mas (1.05152) | |
| cty (1.0408) | |
| hlv (0.974795) | |
| lyg (0.931718) | |
| sto (0.899119) | |
| sin (0.874738) | |
| tra (0.861645) | |
| nms (0.855432) | |
| mcp (0.853242) | |
| amn (0.835422) | |
| nco (0.808669) | |
| aor (0.781097) | |
| thg (0.760746) | |
| cag (0.755972) | |
| bfe (0.749288) | |
| nep (0.7357) | |
| lnt (0.711541) | |
| eye (0.682012) | |
| vin (0.665115) | |
| nmm (0.664011) | |
| csp (0.644745) | |
| cly (0.603209) | |
| clu (0.598229) | |
| pgl (0.592417) | |
| col (0.585023) | |
| cst (0.560146) | |
| nca (0.547495) | |
| gul (0.532765) | |
| cov (0.528611) | |
| ill (0.526778) | |
| eje (0.494169) | |
| eep (0.490256) | |
| mgp (0.461361) | |
| ctl (0.459207) | |
| lin (0.436808) | |
| kid (0.389206) | |
| sag (0.36543) | |
| nje (0.33184) | |
| jej (0.296765) | |
| cte (0.29274) | |
| pla (0.267344) | |
| pan (0.23596) | |
| ece (0.229305) | |
| spc (0.226732) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| nlu (0.191681) | |
| mgm (0.180343) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| hyp (0.142837) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ecc (0.115035) |