Non-Coding RNA Search

Ss1.1-Lng1-LNG010015B07.5

Sequence:


               
               CTTAAAGCTGGGAGAGGGGGCTTGTCGCCGGCTGTGAGCGCGCTGCGGTCCTCGCGTGCA
GACCACCATGAGCAAGCGGAAGGCGCCGCAGGAGACTCTGAACGGAGGCATCACCGACAT
GCTCACAGAACTCGCAAACTTTGAGAAGAACGTGAACCAGGCTATACACAAGTACAACGC
CTATAGGCTTTGTGCCATAGTGCCAATTATGTGGAGTGTTCCGCCGGTCTCGCTGGCTTG
GCGGAGACCATGATGGTCCTCCCCCCTCTCCAAGTCCCGGCCCTTACTTAAAGCTGGGAG
AGGGGGCTTGTCGCCGGCTGTGAGCGCGCTGCGGTCCTCGCGTGCAGACCACCATGAGCA
AGCGGAAGGCGCCGCAGGAGACTCTGAACGGAGGCATCACCGACATGCTCACAGAACTCG
CAAACTTTGAGAAGAACGTGAACCAGGCTATACACAAGTACAACGCCTATAGAAAAGCGG
CATCTGTGATAGCAAAGTACCCACACAAAATAAAGAGTGGAGCAGAAGCTAAGAAACTGC
CTGGAGTAGGAACAAAAATTGCTGAAAAGATTGATGAGTTTTTAGCTACTGGAAAATTGC
GTAAACTGGAAAAGATTCGGCAGGATGATACAAGTTCATCCATCAATTTCCTGACTCGAG
TTAGTGGCATTGGTCCATCTGCTGCAAGGAAGTTTGTAGATGAAGGAATTAAAACATTAG
AAGATCTCAGAAAACATGAAGATAAATTGAACCATCATCAGCGAATTGGGCTAAAATATT
TTGAGGACTTTGAGAAAAGAATTCCTCGTGAAGAGATGTTACAAATGCAAGATATTGTAC
TGAATGAAGTTAAAAAAGTGGATTCTGAATACATTGCTACAGTCTGTGGCAGTTTCAGAA
GAGGTGCAGAGTCCAGTGGTGACATGGATGTTCTTCTGACCCATCCAAGTTTTACCTCTG
AGTCAGCCAAACAGCCAAAGCTGCTACATCGTGTTGTGGAGCAGTTACAAAAGGTCCATT
TTATTACAGATACTCTGTCAAAAGGTGAAACAAAGTTCATGGGTGTTTGCCAGCTTCCCA
GTAAAAACAATGAAAAGGAGTATCCACACAGGAGAATCGATATCAGGTTGATACCCAAGG
ATCAGTATTACTGTGGCGTCCTCTATTTCACTGGGAGTGATATTTTCAATAAGAATATGA
GAGCCCACGCCCTTGAAAAAGGCTTCACAATCAATGAATACACAATCCGTCCTGTGGGAG
TCACTGGAGTTGCTGGAGAGCCGCTGCCCGTGGACAGCGAGAAGGACATCTTTGACTACA
TCCAGTGGAAATACCGAGAACCCAAGGATCGAAGCGAATGAGGCCTATGCACCCAGGCAC
AGCCCAATAGGAGTCTTAATTTATTTCTTAACCTTTGCTATGTAAGGGTCCATGGTGTTT
TTAAATAACTATTTCTTCTTCTTGCTGTAGCTTGCACTGTTAGTCAATAAAGCCTCTTGT
CCTATTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAAAGCTGGGAGAGGGGGCTTGTCGCCGGCTGTGAGCGCGCTGCGGTCCTCGCGTGCA
GACCACCATGAGCAAGCGGAAGGCGCCGCAGGAGACTCTGAACGGAGGCATCACCGACAT
GCTCACAGAACTCGCAAACTTTGAGAAGAACGTGAACCAGGCTATACACAAGTACAACGC
CTATAGGCTTTGTGCCATAGTGCCAATTATGTGGAGTGTTCCGCCGGTCTCGCTGGCTTG
GCGGAGACCATGATGGTCCTCCCCCCTCTCCAAGTCCCGGCCCTTACTTAAAGCTGGGAG
AGGGGGCTTGTCGCCGGCTGTGAGCGCGCTGCGGTCCTCGCGTGCAGACCACCATGAGCA
AGCGGAAGGCGCCGCAGGAGACTCTGAACGGAGGCATCACCGACATGCTCACAGAACTCG
CAAACTTTGAGAAGAACGTGAACCAGGCTATACACAAGTACAACGCCTATAGAAAAGCGG
CATCTGTGATAGCAAAGTACCCACACAAAATAAAGAGTGGAGCAGAAGCTAAGAAACTGC
CTGGAGTAGGAACAAAAATTGCTGAAAAGATTGATGAGTTTTTAGCTACTGGAAAATTGC
GTAAACTGGAAAAGATTCGGCAGGATGATACAAGTTCATCCATCAATTTCCTGACTCGAG
TTAGTGGCATTGGTCCATCTGCTGCAAGGAAGTTTGTAGATGAAGGAATTAAAACATTAG
AAGATCTCAGAAAACATGAAGATAAATTGAACCATCATCAGCGAATTGGGCTAAAATATT
TTGAGGACTTTGAGAAAAGAATTCCTCGTGAAGAGATGTTACAAATGCAAGATATTGTAC
TGAATGAAGTTAAAAAAGTGGATTCTGAATACATTGCTACAGTCTGTGGCAGTTTCAGAA
GAGGTGCAGAGTCCAGTGGTGACATGGATGTTCTTCTGACCCATCCAAGTTTTACCTCTG
AGTCAGCCAAACAGCCAAAGCTGCTACATCGTGTTGTGGAGCAGTTACAAAAGGTCCATT
TTATTACAGATACTCTGTCAAAAGGTGAAACAAAGTTCATGGGTGTTTGCCAGCTTCCCA
GTAAAAACAATGAAAAGGAGTATCCACACAGGAGAATCGATATCAGGTTGATACCCAAGG
ATCAGTATTACTGTGGCGTCCTCTATTTCACTGGGAGTGATATTTTCAATAAGAATATGA
GAGCCCACGCCCTTGAAAAAGGCTTCACAATCAATGAATACACAATCCGTCCTGTGGGAG
TCACTGGAGTTGCTGGAGAGCCGCTGCCCGTGGACAGCGAGAAGGACATCTTTGACTACA
TCCAGTGGAAATACCGAGAACCCAAGGATCGAAGCGAATGAGGCCTATGCACCCAGGCAC
AGCCCAATAGGAGTCTTAATTTATTTCTTAACCTTTGCTATGTAAGGGTCCATGGTGTTT
TTAAATAACTATTTCTTCTTCTTGCTGTAGCTTGCACTGTTAGTCAATAAAGCCTCTTGT
CCTATTAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57097751|ref|XP_532790.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57097751|ref|XP_532790.1|

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-128, gnl|bosTau2|chr27 (23667252-23667379)
               

               
               1-128, gnl|Hg17|chr8 (42315233-42315360)
               


               
               217-414, gnl|bosTau2|chr27 (23667181-23667379)
               

               
               217-414, gnl|Hg17|chr8 (42315171-42315360)
               


               
               1266-1507, gnl|bosTau2|chr27 (23692113-23692353)
               

               
               1266-1507, gnl|Hg17|chr8 (42348237-42348483)
               

               
               1266-1507, gnl|Mm7|chr8 (21413687-21413450)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-128, gnl|bosTau2|chr27 (23667252-23667379)
               

               
               1-128, gnl|Hg17|chr8 (42315233-42315360)
               


               
               217-414, gnl|bosTau2|chr27 (23667181-23667379)
               

               
               217-414, gnl|Hg17|chr8 (42315171-42315360)
               


               
               1266-1507, gnl|bosTau2|chr27 (23692113-23692353)
               

               
               1266-1507, gnl|Hg17|chr8 (42348237-42348483)
               

               
               1266-1507, gnl|Mm7|chr8 (21413687-21413450)

Expressed library(ies): 42 entry(ies)

More info

Expressed library(ies): 42 entry(ies)

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               clu (0.957167)
               

               
               sin (0.874738)
               

               
               tes (0.831255)
               

               
               cte (0.58548)
               

               
               sag (0.548145)
               

               
               tbr (0.462535)
               

               
               liv (0.438853)
               

               
               lin (0.436808)
               

               
               bla (0.373042)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               ldo (0.291008)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 42 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.957167)
               

               
               sin (0.874738)
               

               
               tes (0.831255)
               

               
               cte (0.58548)
               

               
               sag (0.548145)
               

               
               tbr (0.462535)
               

               
               liv (0.438853)
               

               
               lin (0.436808)
               

               
               bla (0.373042)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               ldo (0.291008)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	1-128, gnl\|bosTau2\|chr27 (23667252-23667379)
	1-128, gnl\|Hg17\|chr8 (42315233-42315360)

	217-414, gnl\|bosTau2\|chr27 (23667181-23667379)
	217-414, gnl\|Hg17\|chr8 (42315171-42315360)

	1266-1507, gnl\|bosTau2\|chr27 (23692113-23692353)
	1266-1507, gnl\|Hg17\|chr8 (42348237-42348483)
	1266-1507, gnl\|Mm7\|chr8 (21413687-21413450)

	clu (0.957167)
	sin (0.874738)
	tes (0.831255)
	cte (0.58548)
	sag (0.548145)
	tbr (0.462535)
	liv (0.438853)
	lin (0.436808)
	bla (0.373042)
	vin (0.332557)
	sme (0.305437)
	lun (0.300978)
	ldo (0.291008)
	ssp (0.271039)
	ste (0.270416)
	pla (0.267344)
	ova (0.258264)
	ret (0.257467)
	sug (0.254582)
	cbe (0.239234)
	mgp (0.230681)
	mcp (0.170648)
	eye (0.170503)
	nje (0.16592)
	cki (0.165235)
	nco (0.161734)
	bfe (0.149858)
	fat (0.147427)
	spl (0.143184)
	hyp (0.142837)
	lnt (0.142308)
	che (0.136314)
	lyg (0.133103)
	kid (0.129735)
	thg (0.126791)
	tra (0.123092)
	eru (0.120048)
	pgl (0.118483)
	cbl (0.114797)
	jca (0.11396)
	cty (0.10408)
	nbm (0.0993246)