Non-Coding RNA Search

Ss1.1-Lng1-LNG010015C04.5

Sequence:


               
               CAGAAGCTATTCAGCACAGGAAGCCCCCGTATCCGGTGAGGGATAAGAAGCGAGCAGCAC
AGGATGCGCCTTGGGTCAGGGGGCCGCAGAGAGCCCTCAGCCTTTGTGTCCTTCTCTGTG
ACGGAGCGTCCACATCTGAGCCCTCGGCTCTCCTCCGAGTTCAGCCCCGGCTCCTGCCAT
CACGGACCGGCTGCCAGCTTCCCGCCCAGGGAGACACGGAGGCCGCAATGACTACCTCCC
CCGGATTGCTGCTGCTGCTGCTGCTGCTGTTGGTCCAGCCCCGGGAGGGGGCCACCAGCC
AGGAGGCCGTGGTCTGTGTGGGGACTGCCTGCTACTCGGCCCACTGGGGCAAGCTGAGTG
CAGATGAAGCCCAGCTCCACTGCGACAAGAAGGGGGGCAACCTGGCCACGCTCAAGAGCG
AGGAGGAGGCCCGGCACGTCCAGGGCACCCTGGCCCAGCTATTGCAGCCTGGGGCGCCCC
TGGCAGAGCGCATGGGCCGGTTCTGGATTGGGCTCCAGCGAGACAAGGGCAAGTGCTTGG
ACAGTGACCTGCCGCTGAAGGGCTTCCGCTGGGTGGATGGCGTGGAGGATACGCCATACA
CCAACTGGCACAAGGAGGCCAAGAACTCCTGCATCTCGAAGCGCTGCGTGTCCCTGCTGT
TGGACCTGTCCACGCCCGCCCTGGCCAGCCGCCTCTCCAAGTGGGCCGAGGGCCCGTGCG
GGAGCTCCCGATCTCCCGGAAACAGCGTCGAGGGCTTTGTGTGCAAGTTCAGCTTCAAAG
GCATGTGCCGGCCGCTGGCCCTGGGGGGCCCGGGCCAGGTGACCTACACCACCCCCTTCC
AGGCCACCAGCTCCACCCTGCAGGCTGTGCCCTTCGGCTCCATGGCCCACGTCGCCTGTG
GGGACAGGGACGAGAGTCAGCAGCCTTACTTCCTATGCAAGGAGAAGGCCCCCAATGTGT
TCGAGTGGAACAGCTCAGGGCCCCTCTGCATCAGCCCCAAGCTTGGCTGCGACTTCAACA
ATGGGGGCTGTGAGCAGGACTGCTTTGAAGGGGGGGACGGCTCTTTCCGCTGTGGCTGCC
GGCCGGGGTACCGGCTCCTGGACGACCTGGTCTCCTGTGCCTCCCGGAACCCTTGCAGCT
CCAGCCCTTGTAGAGGGGGGGCCACGTGTGTCCCTGTGCAGCTCGGGAAGGACTTCAGGT
GCCACTGCCCTCCAGGCTACCAGCTGGACTTGACTGGGCGGGACTGTGTGGACGTGGACG
AGTGTCAGGATGCTCCCTGCACCCAGGAGTGTGTCAACACGCCGGGGAGTTTCCGCTGCG
AGTGCTGGGTGGGCTACGAGCGCGGCGGCCCTGGAGAGGGGGCCTGCCAGGATGTGGACG
AGTGTGCCCCCGGCCGCTCGCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAAGCTATTCAGCACAGGAAGCCCCCGTATCCGGTGAGGGATAAGAAGCGAGCAGCAC
AGGATGCGCCTTGGGTCAGGGGGCCGCAGAGAGCCCTCAGCCTTTGTGTCCTTCTCTGTG
ACGGAGCGTCCACATCTGAGCCCTCGGCTCTCCTCCGAGTTCAGCCCCGGCTCCTGCCAT
CACGGACCGGCTGCCAGCTTCCCGCCCAGGGAGACACGGAGGCCGCAATGACTACCTCCC
CCGGATTGCTGCTGCTGCTGCTGCTGCTGTTGGTCCAGCCCCGGGAGGGGGCCACCAGCC
AGGAGGCCGTGGTCTGTGTGGGGACTGCCTGCTACTCGGCCCACTGGGGCAAGCTGAGTG
CAGATGAAGCCCAGCTCCACTGCGACAAGAAGGGGGGCAACCTGGCCACGCTCAAGAGCG
AGGAGGAGGCCCGGCACGTCCAGGGCACCCTGGCCCAGCTATTGCAGCCTGGGGCGCCCC
TGGCAGAGCGCATGGGCCGGTTCTGGATTGGGCTCCAGCGAGACAAGGGCAAGTGCTTGG
ACAGTGACCTGCCGCTGAAGGGCTTCCGCTGGGTGGATGGCGTGGAGGATACGCCATACA
CCAACTGGCACAAGGAGGCCAAGAACTCCTGCATCTCGAAGCGCTGCGTGTCCCTGCTGT
TGGACCTGTCCACGCCCGCCCTGGCCAGCCGCCTCTCCAAGTGGGCCGAGGGCCCGTGCG
GGAGCTCCCGATCTCCCGGAAACAGCGTCGAGGGCTTTGTGTGCAAGTTCAGCTTCAAAG
GCATGTGCCGGCCGCTGGCCCTGGGGGGCCCGGGCCAGGTGACCTACACCACCCCCTTCC
AGGCCACCAGCTCCACCCTGCAGGCTGTGCCCTTCGGCTCCATGGCCCACGTCGCCTGTG
GGGACAGGGACGAGAGTCAGCAGCCTTACTTCCTATGCAAGGAGAAGGCCCCCAATGTGT
TCGAGTGGAACAGCTCAGGGCCCCTCTGCATCAGCCCCAAGCTTGGCTGCGACTTCAACA
ATGGGGGCTGTGAGCAGGACTGCTTTGAAGGGGGGGACGGCTCTTTCCGCTGTGGCTGCC
GGCCGGGGTACCGGCTCCTGGACGACCTGGTCTCCTGTGCCTCCCGGAACCCTTGCAGCT
CCAGCCCTTGTAGAGGGGGGGCCACGTGTGTCCCTGTGCAGCTCGGGAAGGACTTCAGGT
GCCACTGCCCTCCAGGCTACCAGCTGGACTTGACTGGGCGGGACTGTGTGGACGTGGACG
AGTGTCAGGATGCTCCCTGCACCCAGGAGTGTGTCAACACGCCGGGGAGTTTCCGCTGCG
AGTGCTGGGTGGGCTACGAGCGCGGCGGCCCTGGAGAGGGGGCCTGCCAGGATGTGGACG
AGTGTGCCCCCGGCCGCTCGCCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55651353|ref|XP_514549.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55651353|ref|XP_514549.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               759-878, - strand, RNAz p=0.718409
               

               
               1287-1404, + strand, RNAz p=0.518442

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               759-878, - strand, RNAz p=0.718409
               

               
               1287-1404, + strand, RNAz p=0.518442

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_012072, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_012072, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1404, gnl|bosTau2|chr13 (27490461-27489058)
               

               
               1-1404, gnl|Hg17|chr20 (23015068-23013644)
               

               
               1-1404, gnl|Mm7|chr2 (148184538-148183105)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1404, gnl|bosTau2|chr13 (27490461-27489058)
               

               
               1-1404, gnl|Hg17|chr20 (23015068-23013644)
               

               
               1-1404, gnl|Mm7|chr2 (148184538-148183105)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               med (0.116252)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	759-878, - strand, RNAz p=0.718409
	1287-1404, + strand, RNAz p=0.518442

	1-1404, gnl\|bosTau2\|chr13 (27490461-27489058)
	1-1404, gnl\|Hg17\|chr20 (23015068-23013644)
	1-1404, gnl\|Mm7\|chr2 (148184538-148183105)