Ss1.1-Lng1-LNG010015D11.5
|
CCCACTACCCAGGAAGGCGGTGCGGGGAGCGAGCGCTGCTTTCGCTTTCCCTTCCCTGTG
CCCACTCCTCGCTCCGCGTGCGGCGCTAGGCCCCCTCCCCGGCCATGGCCACGCTCAGGG
TCCAGCCCGAAGCCCAAGCCAAGGTCGATGTGTTCCGTGAAGACCTGTGTACCAAGACAG
AGAACCTACTCGGGAGCTATTTCCCCAAGAAGATTTCTGAGTTGGATGCATTTTTAAAGG
AGCCAGCTCTCAATGAAGCCAACCTGAGCAATCTGAAGGCCCCATTGGACATTCCAGTGC
CTGATCCGGTCAAGGAGAAAGAGAAGGAGGAAAGGAAGAAACAGCAGGAGAAGGAAGACA
AAGATGAAAAGAAGAAGGGGGAAGATGAGGATAAAGGTCCTCCCTGTGGCCCAGTGAACT
GCAATGAGAAGATCGTGGTCCTCCTGCAGCGCCTGAAGCCTGAGATCAAGGATGTCATTG
AGCAGCTCAACCTGGTTACCACCTGGTTGCAGCTGCAGATACCTCGGATTGAAGACGGTA
ATAATTTTGGAGTGGCTGTCCAGGAGAAGGTTTTCGAGCTGATGACCGCCCTTCACACCA
AACTGGAAGGCTTCCACACTCAAATCTCCAAGTATTTCTCTGAGCGGGGCGATGCTGTGG
CCAAAGCAGCTAAGCAGCCTCACGTGGGTGATTATCGGCAGCTAGTGCACGAGCTGGATG
AGGCAGAGTACCGGGATATCCGGCTGATGGTCATGGAGATCCGCAATGCTTACGCTGTGT
TATATGACATCATCCTGAAGAACTTTGAGAAACTCAAGAAGCCTAGGGGAGAAACAAAAG
GCATGATCTATTGAGAGCCTCCCCTCCTTCTGTGATGGGTCCAGCAGACCTTCCTGACTT
TTACTGGGGACTCCAGGCTTTCCCCACCTTCTGCCTGTTGAGGTTTCTCCCTCACCTTGC
CTCCCAGGCACAATAAATATAGTCGTACCGTTAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCCACTACCCAGGAAGGCGGTGCGGGGAGCGAGCGCTGCTTTCGCTTTCCCTTCCCTGTG
CCCACTCCTCGCTCCGCGTGCGGCGCTAGGCCCCCTCCCCGGCCATGGCCACGCTCAGGG
TCCAGCCCGAAGCCCAAGCCAAGGTCGATGTGTTCCGTGAAGACCTGTGTACCAAGACAG
AGAACCTACTCGGGAGCTATTTCCCCAAGAAGATTTCTGAGTTGGATGCATTTTTAAAGG
AGCCAGCTCTCAATGAAGCCAACCTGAGCAATCTGAAGGCCCCATTGGACATTCCAGTGC
CTGATCCGGTCAAGGAGAAAGAGAAGGAGGAAAGGAAGAAACAGCAGGAGAAGGAAGACA
AAGATGAAAAGAAGAAGGGGGAAGATGAGGATAAAGGTCCTCCCTGTGGCCCAGTGAACT
GCAATGAGAAGATCGTGGTCCTCCTGCAGCGCCTGAAGCCTGAGATCAAGGATGTCATTG
AGCAGCTCAACCTGGTTACCACCTGGTTGCAGCTGCAGATACCTCGGATTGAAGACGGTA
ATAATTTTGGAGTGGCTGTCCAGGAGAAGGTTTTCGAGCTGATGACCGCCCTTCACACCA
AACTGGAAGGCTTCCACACTCAAATCTCCAAGTATTTCTCTGAGCGGGGCGATGCTGTGG
CCAAAGCAGCTAAGCAGCCTCACGTGGGTGATTATCGGCAGCTAGTGCACGAGCTGGATG
AGGCAGAGTACCGGGATATCCGGCTGATGGTCATGGAGATCCGCAATGCTTACGCTGTGT
TATATGACATCATCCTGAAGAACTTTGAGAAACTCAAGAAGCCTAGGGGAGAAACAAAAG
GCATGATCTATTGAGAGCCTCCCCTCCTTCTGTGATGGGTCCAGCAGACCTTCCTGACTT
TTACTGGGGACTCCAGGCTTTCCCCACCTTCTGCCTGTTGAGGTTTCTCCCTCACCTTGC
CTCCCAGGCACAATAAATATAGTCGTACCGTTAAAAAAAAAAAAAAAA
|
|
1-145, gnl|bosTau2|chr10 (12373689-12373546) |
|
1-145, gnl|canFam2|chr8 (7136993-7137402) |
|
1-145, gnl|dasNov1|scaffold_37422 (11800-12206) |
|
1-145, gnl|hg17|chr14 (23675203-23675605) |
|
1-145, gnl|Hg17|chr14 (23675204-23675352) |
|
1-145, gnl|mm7|chr14 (50445760-50446152) |
|
1-145, gnl|Mm7|chr14 (50445760-50445911) |
|
1-145, gnl|monDom2|scaffold_12 (25640694-25640176) |
|
1-145, gnl|panTro1|chr15 (22575519-22575921) |
|
1-145, gnl|rheMac2|chr7 (87029620-87030017) |
|
1-145, gnl|rn3|chr15 (33728595-33728992) |
| |
|
238-350, gnl|bosTau2|chr10 (12372654-12372542) |
|
238-350, gnl|Hg17|chr14 (23676368-23676480) |
|
238-350, gnl|Mm7|chr14 (50447225-50447337) |
| |
|
395-496, gnl|bosTau2|chr10 (12372292-12372191) |
|
395-496, gnl|Hg17|chr14 (23676747-23676848) |
|
395-496, gnl|Mm7|chr14 (50447624-50447725) |
| |
|
771-992, gnl|bosTau2|chr10 (12371260-12371040) |
|
771-992, gnl|Hg17|chr14 (23677782-23678008) |
|
771-992, gnl|Mm7|chr14 (50448594-50448823) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-145, gnl|bosTau2|chr10 (12373689-12373546) |
|
1-145, gnl|canFam2|chr8 (7136993-7137402) |
|
1-145, gnl|dasNov1|scaffold_37422 (11800-12206) |
|
1-145, gnl|hg17|chr14 (23675203-23675605) |
|
1-145, gnl|Hg17|chr14 (23675204-23675352) |
|
1-145, gnl|mm7|chr14 (50445760-50446152) |
|
1-145, gnl|Mm7|chr14 (50445760-50445911) |
|
1-145, gnl|monDom2|scaffold_12 (25640694-25640176) |
|
1-145, gnl|panTro1|chr15 (22575519-22575921) |
|
1-145, gnl|rheMac2|chr7 (87029620-87030017) |
|
1-145, gnl|rn3|chr15 (33728595-33728992) |
| |
|
238-350, gnl|bosTau2|chr10 (12372654-12372542) |
|
238-350, gnl|Hg17|chr14 (23676368-23676480) |
|
238-350, gnl|Mm7|chr14 (50447225-50447337) |
| |
|
395-496, gnl|bosTau2|chr10 (12372292-12372191) |
|
395-496, gnl|Hg17|chr14 (23676747-23676848) |
|
395-496, gnl|Mm7|chr14 (50447624-50447725) |
| |
|
771-992, gnl|bosTau2|chr10 (12371260-12371040) |
|
771-992, gnl|Hg17|chr14 (23677782-23678008) |
|
771-992, gnl|Mm7|chr14 (50448594-50448823) |
|
nco (1.13214) |
|
mcp (1.02389) |
|
cly (0.965135) |
|
duo (0.864006) |
|
cje (0.826173) |
|
che (0.817884) |
|
jej (0.791374) |
|
cag (0.755972) |
|
csp (0.644745) |
|
nlu (0.575043) |
|
fty (0.527519) |
|
cut (0.509771) |
|
nje (0.49776) |
|
spl (0.429553) |
|
hlv (0.417769) |
|
fli (0.405762) |
|
fcc (0.39557) |
|
col (0.390016) |
|
ese (0.379507) |
|
eru (0.360144) |
|
sin (0.349895) |
|
cki (0.330469) |
|
cli (0.305623) |
|
cst (0.280073) |
|
fce (0.271592) |
|
nmm (0.265604) |
|
cov (0.264306) |
|
tra (0.246184) |
|
pgl (0.236967) |
|
mas (0.210305) |
|
nbm (0.198649) |
|
eje (0.197668) |
|
ill (0.175593) |
|
ton (0.1755) |
|
eye (0.170503) |
|
eli (0.151814) |
|
fat (0.147427) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
ssp (0.13552) |
|
kid (0.129735) |
|
clu (0.119646) |
|
med (0.116252) |
|
jca (0.11396) |
|
cty (0.10408) |
|
ldo (0.0970026) |
|
nco (1.13214) |
|
mcp (1.02389) |
|
cly (0.965135) |
|
duo (0.864006) |
|
cje (0.826173) |
|
che (0.817884) |
|
jej (0.791374) |
|
cag (0.755972) |
|
csp (0.644745) |
|
nlu (0.575043) |
|
fty (0.527519) |
|
cut (0.509771) |
|
nje (0.49776) |
|
spl (0.429553) |
|
hlv (0.417769) |
|
fli (0.405762) |
|
fcc (0.39557) |
|
col (0.390016) |
|
ese (0.379507) |
|
eru (0.360144) |
|
sin (0.349895) |
|
cki (0.330469) |
|
cli (0.305623) |
|
cst (0.280073) |
|
fce (0.271592) |
|
nmm (0.265604) |
|
cov (0.264306) |
|
tra (0.246184) |
|
pgl (0.236967) |
|
mas (0.210305) |
|
nbm (0.198649) |
|
eje (0.197668) |
|
ill (0.175593) |
|
ton (0.1755) |
|
eye (0.170503) |
|
eli (0.151814) |
|
fat (0.147427) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
ssp (0.13552) |
|
kid (0.129735) |
|
clu (0.119646) |
|
med (0.116252) |
|
jca (0.11396) |
|
cty (0.10408) |
|
ldo (0.0970026) |
