Ss1.1-Lng1-LNG010015H04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGCCCGCGAGAGGACGTGCGGTGCAGCGAAAGGCAGCGGCGGCAGCACAGCTGGACTT GGAGGGCCGGCGGGCGCCGGGAATCAAGACGCAGGCGCCGGCGGGGAAGTAGGTCCTGGG CGCGGCGCTCAACAAAGAGCGGGGCCGCCCCCCTCAGGCGGAGCTGCGGGCAGAGGCTCC ATGTTGGGAAGCGGCGCCGCTCGTCCTCGTTAGCGGGAATCGGGGCGCCGCGGGCACAGC CGGCGGGGGCCGGGCCCTGAACGAAGATGGAGGCCCCTCTGCGGCCTGCCGCGGACATCC TGAGGCGGAACCCGCAGCAAGACTACGAGCTCGTTCAGAGGGTCGGCAGCGGCACCTACG GGGACGTCTATAAGGTGAGGCAGGTACATACGGGAGAGTTGGCTGCAGTAAAAATTATCA AATTGGAGCCTGGAGATGATTTTTCTTTGATTCAACAGGAGATATTTATGGTTAAAGAAT GTAAGCATTGCAACATCGTTGCCTACTTTGGAAGCTATCTCAGTCGGGAAAAGCTGTGGA TTTGTATGGAATACTGTGGTGGCGGATCACTTCAAGATATTTACCATGTTACTGGACCAT TATCAGAGTTGCAAATAGCCTATGTATGCAGAGAAACTTTACAGGGTCTTGCCTATTTGC ATACCAAAGGCAAAATGCATAGAGATATCAAAGGTGCAAATATTTTATTGACAGATCATG GTGATGTAAAATTAGCTGACTTTGGCGTGGCTGCAAAAATAACAGCTACCATTGCAAAAA GAAAATCTTTCATTGGCACTCCTTACTGGATGGCCCCAGAAGTTGCAGCAGTAGAAAAGA ATGGTGGCTACAACCAACTCTGTGATATCTGGGCAGTAGGAATAACAGCAATTGAACTTG GAGAACTTCAACCACCTATGTTTGATCTTCATCCAATGAGGGCCCTCTTCTTAATGTCAA AAAGTAATTTTCAGCCTCCGAAACTAAAGGACAAAACAAAATGGTCATCAACATTCCATA ATTTTGTCAAAATAGCACTAACCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGCCCGCGAGAGGACGTGCGGTGCAGCGAAAGGCAGCGGCGGCAGCACAGCTGGACTT GGAGGGCCGGCGGGCGCCGGGAATCAAGACGCAGGCGCCGGCGGGGAAGTAGGTCCTGGG CGCGGCGCTCAACAAAGAGCGGGGCCGCCCCCCTCAGGCGGAGCTGCGGGCAGAGGCTCC ATGTTGGGAAGCGGCGCCGCTCGTCCTCGTTAGCGGGAATCGGGGCGCCGCGGGCACAGC CGGCGGGGGCCGGGCCCTGAACGAAGATGGAGGCCCCTCTGCGGCCTGCCGCGGACATCC TGAGGCGGAACCCGCAGCAAGACTACGAGCTCGTTCAGAGGGTCGGCAGCGGCACCTACG GGGACGTCTATAAGGTGAGGCAGGTACATACGGGAGAGTTGGCTGCAGTAAAAATTATCA AATTGGAGCCTGGAGATGATTTTTCTTTGATTCAACAGGAGATATTTATGGTTAAAGAAT GTAAGCATTGCAACATCGTTGCCTACTTTGGAAGCTATCTCAGTCGGGAAAAGCTGTGGA TTTGTATGGAATACTGTGGTGGCGGATCACTTCAAGATATTTACCATGTTACTGGACCAT TATCAGAGTTGCAAATAGCCTATGTATGCAGAGAAACTTTACAGGGTCTTGCCTATTTGC ATACCAAAGGCAAAATGCATAGAGATATCAAAGGTGCAAATATTTTATTGACAGATCATG GTGATGTAAAATTAGCTGACTTTGGCGTGGCTGCAAAAATAACAGCTACCATTGCAAAAA GAAAATCTTTCATTGGCACTCCTTACTGGATGGCCCCAGAAGTTGCAGCAGTAGAAAAGA ATGGTGGCTACAACCAACTCTGTGATATCTGGGCAGTAGGAATAACAGCAATTGAACTTG GAGAACTTCAACCACCTATGTTTGATCTTCATCCAATGAGGGCCCTCTTCTTAATGTCAA AAAGTAATTTTCAGCCTCCGAAACTAAAGGACAAAACAAAATGGTCATCAACATTCCATA ATTTTGTCAAAATAGCACTAACCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 747-894, - strand, RNAz p=0.684358 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 747-894, - strand, RNAz p=0.684358 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 155-384, gnl|bosTau2|chr10 (28965343-28965114) | |
| 155-384, gnl|Hg17|chr14 (50068629-50068396) | |
| 155-384, gnl|Mm7|chr12 (67833855-67833632) | |
| 414-523, gnl|bosTau2|chr10 (28912316-28912206) | |
| 414-523, gnl|canFam2|chr8 (29920332-29920437) | |
| 414-523, gnl|danRer3|chr13 (39432721-39432828) | |
| 414-523, gnl|dasNov1|scaffold_72167 (3496-3384) | |
| 414-523, gnl|echTel1|scaffold_276332 (5205-5307) | |
| 414-523, gnl|fr1|chrUn (2727401-2727288) | |
| 414-523, gnl|galGal2|chr5 (54512042-54512142) | |
| 414-523, gnl|hg17|chr14 (50022559-50022670) | |
| 414-523, gnl|Hg17|chr14 (50022676-50022572) | |
| 414-523, gnl|loxAfr1|scaffold_35877 (7690-7579) | |
| 414-523, gnl|mm7|chr12 (67797755-67797863) | |
| 414-523, gnl|Mm7|chr12 (67797869-67797765) | |
| 414-523, gnl|monDom2|scaffold_8 (88246000-88245899) | |
| 414-523, gnl|panTro1|chr15 (49437216-49437327) | |
| 414-523, gnl|rheMac2|chr7 (113550643-113550755) | |
| 414-523, gnl|rn3|chr6 (91944106-91944211) | |
| 414-523, gnl|tetNig1|chr10 (11291519-11291406) | |
| 592-961, gnl|bosTau2|chr12 (42346750-42347110) | |
| 592-961, gnl|Hg17|chrX (135104320-135103960) | |
| 592-961, gnl|Mm7|chr14 (115707239-115701611) | |
| 775-941, gnl|bosTau2|chr10 (28902580-28902417) | |
| 775-941, gnl|Hg17|chr14 (50005281-50005118) | |
| 775-941, gnl|Mm7|chr12 (67786825-67786672) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 155-384, gnl|bosTau2|chr10 (28965343-28965114) | |
| 155-384, gnl|Hg17|chr14 (50068629-50068396) | |
| 155-384, gnl|Mm7|chr12 (67833855-67833632) | |
| 414-523, gnl|bosTau2|chr10 (28912316-28912206) | |
| 414-523, gnl|canFam2|chr8 (29920332-29920437) | |
| 414-523, gnl|danRer3|chr13 (39432721-39432828) | |
| 414-523, gnl|dasNov1|scaffold_72167 (3496-3384) | |
| 414-523, gnl|echTel1|scaffold_276332 (5205-5307) | |
| 414-523, gnl|fr1|chrUn (2727401-2727288) | |
| 414-523, gnl|galGal2|chr5 (54512042-54512142) | |
| 414-523, gnl|hg17|chr14 (50022559-50022670) | |
| 414-523, gnl|Hg17|chr14 (50022676-50022572) | |
| 414-523, gnl|loxAfr1|scaffold_35877 (7690-7579) | |
| 414-523, gnl|mm7|chr12 (67797755-67797863) | |
| 414-523, gnl|Mm7|chr12 (67797869-67797765) | |
| 414-523, gnl|monDom2|scaffold_8 (88246000-88245899) | |
| 414-523, gnl|panTro1|chr15 (49437216-49437327) | |
| 414-523, gnl|rheMac2|chr7 (113550643-113550755) | |
| 414-523, gnl|rn3|chr6 (91944106-91944211) | |
| 414-523, gnl|tetNig1|chr10 (11291519-11291406) | |
| 592-961, gnl|bosTau2|chr12 (42346750-42347110) | |
| 592-961, gnl|Hg17|chrX (135104320-135103960) | |
| 592-961, gnl|Mm7|chr14 (115707239-115701611) | |
| 775-941, gnl|bosTau2|chr10 (28902580-28902417) | |
| 775-941, gnl|Hg17|chr14 (50005281-50005118) | |
| 775-941, gnl|Mm7|chr12 (67786825-67786672) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spc (0.113366) |