Ss1.1-Lng1-LNG010016A02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTCAGAGTCCCACGAGCTTAGCGAAGGAGGAGACGAGAAGAAAAAGCGGGACTTTCGGA AAAGCGGCTTTCTCAATTTAATCAAACCCCGGTCCAAATGTGACCGGTCCCCAGCAGTCT TGGCGACCGAAGAACTCTCCTCCCCCAAGGCGGGAGTCCGAAGTCCAGCCGTGGACGCCC CCAGGAAGGACACGAAGGCTGCCGAGCACAATGGCAGTGCTGAGCGGGCGGAGGAACTCA AAACACCTGAGTCCCTAGAGGAAGGTCAAGGGGAGGAGGTGGGGAAGGTGGAGCGCAGTG ACAGCAAGGGCAGCCCACAGGGAGGACGGAGGTACGGGGTCCAGATGATGGGCAGCGGTC TGCTGGCAGAGATGAAGGCCAAGCAGGAGCGGAGGGCTGCTGGCTCGCAGAAGAAACTTG GGAGTGAAGCCACCCCCCAGGATCCTTCCAGCCTGGCCTTGGGCAGCTCGGAACAGTTGG ATGGAGGTGGGGCAGTGCCCAAAGTGCACCCAGAGAACCGCTTCGCTTTGGGAACACCAG AAAAGAATGCCAAAGTGGAGCTCAGAGCGGAGGGGGGCTCCAGGTCTCGGAGCTTTTCCA GCAGGCCCACCAGCCCGAAGCCGCTCCTGCAGTCCCCCAAACCCAGCCCAGGGGCGAGAC CCACCATCCCGCAGAAACCACGCACTGCCTCGCGGCCAGAGGACCTCCCACACTCTCCAT CCAGCCCGGGTTCCCCTAAAGTCGCTCTTCTTCCGCCTGTGCTGAAAAAAGTTCCTTCGG ACAAGGAGAGAGATGGCCAGAGTAGCCCGCAGCCCAGTCCCAGGACGTTTTCCCGGGAAG TGGCGAGGAGAAGCTGGGGCCAGCAGGCCCAGGAGTGTCAAGAACAAAAGCAATGGTCCT CCGGAAAAGATGGCCAGCAAGGCAGCAAATCCAGTGACTCTGGAGAAGAAGCAGAAAAAG AGTTTATTTTTGTGTAAAGGGCACCCACACCGAAGTCTTACTGTGCAGGGTGCTTTGTGT TAGCCATCAGCAAGGAACCAAGGGCCACCCCTCTTCCTGCTTCCTAAGCCGCCTTCTCTT GGTGCTCATTTCTTTTCCCTTCTTCCCTTTTTAAATTTTTTTTCTGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTCAGAGTCCCACGAGCTTAGCGAAGGAGGAGACGAGAAGAAAAAGCGGGACTTTCGGA AAAGCGGCTTTCTCAATTTAATCAAACCCCGGTCCAAATGTGACCGGTCCCCAGCAGTCT TGGCGACCGAAGAACTCTCCTCCCCCAAGGCGGGAGTCCGAAGTCCAGCCGTGGACGCCC CCAGGAAGGACACGAAGGCTGCCGAGCACAATGGCAGTGCTGAGCGGGCGGAGGAACTCA AAACACCTGAGTCCCTAGAGGAAGGTCAAGGGGAGGAGGTGGGGAAGGTGGAGCGCAGTG ACAGCAAGGGCAGCCCACAGGGAGGACGGAGGTACGGGGTCCAGATGATGGGCAGCGGTC TGCTGGCAGAGATGAAGGCCAAGCAGGAGCGGAGGGCTGCTGGCTCGCAGAAGAAACTTG GGAGTGAAGCCACCCCCCAGGATCCTTCCAGCCTGGCCTTGGGCAGCTCGGAACAGTTGG ATGGAGGTGGGGCAGTGCCCAAAGTGCACCCAGAGAACCGCTTCGCTTTGGGAACACCAG AAAAGAATGCCAAAGTGGAGCTCAGAGCGGAGGGGGGCTCCAGGTCTCGGAGCTTTTCCA GCAGGCCCACCAGCCCGAAGCCGCTCCTGCAGTCCCCCAAACCCAGCCCAGGGGCGAGAC CCACCATCCCGCAGAAACCACGCACTGCCTCGCGGCCAGAGGACCTCCCACACTCTCCAT CCAGCCCGGGTTCCCCTAAAGTCGCTCTTCTTCCGCCTGTGCTGAAAAAAGTTCCTTCGG ACAAGGAGAGAGATGGCCAGAGTAGCCCGCAGCCCAGTCCCAGGACGTTTTCCCGGGAAG TGGCGAGGAGAAGCTGGGGCCAGCAGGCCCAGGAGTGTCAAGAACAAAAGCAATGGTCCT CCGGAAAAGATGGCCAGCAAGGCAGCAAATCCAGTGACTCTGGAGAAGAAGCAGAAAAAG AGTTTATTTTTGTGTAAAGGGCACCCACACCGAAGTCTTACTGTGCAGGGTGCTTTGTGT TAGCCATCAGCAAGGAACCAAGGGCCACCCCTCTTCCTGCTTCCTAAGCCGCCTTCTCTT GGTGCTCATTTCTTTTCCCTTCTTCCCTTTTTAAATTTTTTTTCTGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 272-389, + strand, RNAz p=0.827501 | |
| 524-697, - strand, RNAz p=0.670794 | |
| 588-697, - strand, RNAz p=0.555368 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 272-389, + strand, RNAz p=0.827501 | |
| 524-697, - strand, RNAz p=0.670794 | |
| 588-697, - strand, RNAz p=0.555368 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-389, gnl|bosTau2|chr23 (26214115-26214503) | |
| 1-389, gnl|Hg17|chr6 (25708538-25708929) | |
| 1-389, gnl|Mm7|chr13 (23402393-23402011) | |
| 494-697, gnl|bosTau2|chr23 (26217842-26218045) | |
| 494-697, gnl|canFam2|chr35 (26584912-26585163) | |
| 494-697, gnl|dasNov1|scaffold_10851 (55303-55050) | |
| 494-697, gnl|echTel1|scaffold_178843 (1055-804) | |
| 494-697, gnl|galGal2|chr2 (89807531-89807281) | |
| 494-697, gnl|hg17|chr6 (25714246-25714488) | |
| 494-697, gnl|Hg17|chr6 (25714266-25714478) | |
| 494-697, gnl|loxAfr1|scaffold_288 (107639-107384) | |
| 494-697, gnl|mm7|chr13 (23390370-23390119) | |
| 494-697, gnl|Mm7|chr13 (23390339-23390127) | |
| 494-697, gnl|monDom2|scaffold_3 (116256976-116257239) | |
| 494-697, gnl|oryCun1|scaffold_200646 (40044-40288) | |
| 494-697, gnl|panTro1|chr5 (26187553-26187795) | |
| 494-697, gnl|rheMac2|chr4 (25601933-25602175) | |
| 494-697, gnl|rn3|chr17 (48196982-48197233) | |
| 494-697, gnl|xenTro1|scaffold_185 (1542594-1542846) | |
| 839-1108, gnl|bosTau2|chr23 (26227586-26227853) | |
| 839-1108, gnl|Hg17|chr6 (25727652-25727965) | |
| 839-1108, gnl|Mm7|chr13 (23379264-23379012) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-389, gnl|bosTau2|chr23 (26214115-26214503) | |
| 1-389, gnl|Hg17|chr6 (25708538-25708929) | |
| 1-389, gnl|Mm7|chr13 (23402393-23402011) | |
| 494-697, gnl|bosTau2|chr23 (26217842-26218045) | |
| 494-697, gnl|canFam2|chr35 (26584912-26585163) | |
| 494-697, gnl|dasNov1|scaffold_10851 (55303-55050) | |
| 494-697, gnl|echTel1|scaffold_178843 (1055-804) | |
| 494-697, gnl|galGal2|chr2 (89807531-89807281) | |
| 494-697, gnl|hg17|chr6 (25714246-25714488) | |
| 494-697, gnl|Hg17|chr6 (25714266-25714478) | |
| 494-697, gnl|loxAfr1|scaffold_288 (107639-107384) | |
| 494-697, gnl|mm7|chr13 (23390370-23390119) | |
| 494-697, gnl|Mm7|chr13 (23390339-23390127) | |
| 494-697, gnl|monDom2|scaffold_3 (116256976-116257239) | |
| 494-697, gnl|oryCun1|scaffold_200646 (40044-40288) | |
| 494-697, gnl|panTro1|chr5 (26187553-26187795) | |
| 494-697, gnl|rheMac2|chr4 (25601933-25602175) | |
| 494-697, gnl|rn3|chr17 (48196982-48197233) | |
| 494-697, gnl|xenTro1|scaffold_185 (1542594-1542846) | |
| 839-1108, gnl|bosTau2|chr23 (26227586-26227853) | |
| 839-1108, gnl|Hg17|chr6 (25727652-25727965) | |
| 839-1108, gnl|Mm7|chr13 (23379264-23379012) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.195008) | |
| jca (0.11396) |