Ss1.1-Lng1-LNG010016A08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAATGTGGGAACCATACGTGTTCTCAAGTGTGCCACCCTCAGCCCTGCCAGCCCTGCCC ACGGCTCCCCCAGCTGGTGCGTTGCTGCCCTTGTGGACAAACTCCTCTCAGCCAATTGCT AGAACTTGGAAGTAGCGGTCGGAAAACATGCATGGATCCTGTCCCTTCATGTGGAAAAGT GTGCGGCAAGCCTCTCCCTTGTGGTTCCTTAGATTTCATTCATACCTGTGAAAAGCTCTG CCATGAAGGAGACTGTGGACCATGCTCTCGCACATCAGTTATTTCCTGCAGATGCTCTTT CAGAACGAAGGAGCTTCCATGTACCAGTCTCAAAAGTGAAGATGCTACATTTATGTGTGA CAAGCGGTGTAACAAGAAGCGGTTATGTGGACGGCATAAGTGTAATGAGATATGCTGTGT GGATAAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCGTTGTGGCCTTCATAG ATGTGAAGAACCTTGTCATCGTGGGAATTGCCAGACGTGTTGGCAAGCTAGTTTTGATGA ATTAACCTGCCACTGTGGCGCGTCAGTGATCTACCCTCCAGTTCCCTGTGGTACCAGGCC CCCTGAGTGTACCCAAACCTGTGCCAGAGTCCATGAATGTGACCATCCAGTATATCATTC TTGTCATAGTGAAGACAAGTGTCCCCCTTGTACTTTTCTAACTCAGAAATGGTGCATGGG CAAACATGAGTTACGAAGCAACATCCCCTGTCACCTGGTTGATATCTCTTGCGGATTACC CTGTGGTGCTACACTGCCGTGTGGGATGCACAGGTGTCAGAGACTCTGTCACAAAGGAGA GTGTCTTGTAGATGAGCCCTGCAAGCAGCCATGCACCACCTCCAGAGCTGACTGTGGCCA CCCATGTATGGCGCCCTGCCACCTCAGCTCACCCTGCCCAGTGACTGCTTGTAAAGCTAA GGTAGAGCTGCAGTGTGAATGTGGACGAAGAAAAGAAACCATGATTTGCTCTGAAGCATC CAGTACTTATCAAAGAATAGCAGCTATTTCCATGGCCTCGAAAATAACAGACATGCAGCT TGGAGATTCGGTGGAGATCAGCAAGTTAATTACTAAGAAGGAAATTCACCAAGCCAGGCT GGAGTGTGATGAGGAGTGTTCAGCCTTGGAAAGGAAAAAGCGATTAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAATGTGGGAACCATACGTGTTCTCAAGTGTGCCACCCTCAGCCCTGCCAGCCCTGCCC ACGGCTCCCCCAGCTGGTGCGTTGCTGCCCTTGTGGACAAACTCCTCTCAGCCAATTGCT AGAACTTGGAAGTAGCGGTCGGAAAACATGCATGGATCCTGTCCCTTCATGTGGAAAAGT GTGCGGCAAGCCTCTCCCTTGTGGTTCCTTAGATTTCATTCATACCTGTGAAAAGCTCTG CCATGAAGGAGACTGTGGACCATGCTCTCGCACATCAGTTATTTCCTGCAGATGCTCTTT CAGAACGAAGGAGCTTCCATGTACCAGTCTCAAAAGTGAAGATGCTACATTTATGTGTGA CAAGCGGTGTAACAAGAAGCGGTTATGTGGACGGCATAAGTGTAATGAGATATGCTGTGT GGATAAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCGTTGTGGCCTTCATAG ATGTGAAGAACCTTGTCATCGTGGGAATTGCCAGACGTGTTGGCAAGCTAGTTTTGATGA ATTAACCTGCCACTGTGGCGCGTCAGTGATCTACCCTCCAGTTCCCTGTGGTACCAGGCC CCCTGAGTGTACCCAAACCTGTGCCAGAGTCCATGAATGTGACCATCCAGTATATCATTC TTGTCATAGTGAAGACAAGTGTCCCCCTTGTACTTTTCTAACTCAGAAATGGTGCATGGG CAAACATGAGTTACGAAGCAACATCCCCTGTCACCTGGTTGATATCTCTTGCGGATTACC CTGTGGTGCTACACTGCCGTGTGGGATGCACAGGTGTCAGAGACTCTGTCACAAAGGAGA GTGTCTTGTAGATGAGCCCTGCAAGCAGCCATGCACCACCTCCAGAGCTGACTGTGGCCA CCCATGTATGGCGCCCTGCCACCTCAGCTCACCCTGCCCAGTGACTGCTTGTAAAGCTAA GGTAGAGCTGCAGTGTGAATGTGGACGAAGAAAAGAAACCATGATTTGCTCTGAAGCATC CAGTACTTATCAAAGAATAGCAGCTATTTCCATGGCCTCGAAAATAACAGACATGCAGCT TGGAGATTCGGTGGAGATCAGCAAGTTAATTACTAAGAAGGAAATTCACCAAGCCAGGCT GGAGTGTGATGAGGAGTGTTCAGCCTTGGAAAGGAAAAAGCGATTAGC |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 845-964, - strand, RNAz p=0.692088 | |
| 862-964, - strand, RNAz p=0.576875 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 845-964, - strand, RNAz p=0.692088 | |
| 862-964, - strand, RNAz p=0.576875 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 841-949, - strand, RNAmicro p=0.999819 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 1-212, gnl|bosTau2|chr8 (40418584-40418795) | |
| 1-212, gnl|canFam2|chr11 (53453051-53453277) | |
| 1-212, gnl|danRer3|chr7 (29469491-29469711) | |
| 1-212, gnl|echTel1|scaffold_318519 (15480-15254) | |
| 1-212, gnl|fr1|chrUn (3384562-3384789) | |
| 1-212, gnl|galGal2|chr2 (55234568-55234795) | |
| 1-212, gnl|hg17|chr9 (33308907-33309134) | |
| 1-212, gnl|Hg17|chr9 (33308914-33309125) | |
| 1-212, gnl|loxAfr1|scaffold_14602 (26844-26618) | |
| 1-212, gnl|mm7|chr4 (41132425-41132652) | |
| 1-212, gnl|Mm7|chr4 (41132432-41132643) | |
| 1-212, gnl|monDom2|scaffold_83 (5309151-5308924) | |
| 1-212, gnl|oryCun1|scaffold_192536 (1731-1504) | |
| 1-212, gnl|panTro1|chr11 (33808028-33808255) | |
| 1-212, gnl|rheMac2|chr15 (43908034-43907807) | |
| 1-212, gnl|rn3|chr5 (58388118-58388345) | |
| 1-212, gnl|tetNig1|chr6 (4835784-4835999) | |
| 1-212, gnl|xenTro1|scaffold_89 (1668331-1668581) | |
| 531-650, gnl|bosTau2|chr8 (40439296-40439415) | |
| 531-650, gnl|canFam2|chr11 (53471885-53472103) | |
| 531-650, gnl|danRer3|chr7 (29475055-29475235) | |
| 531-650, gnl|echTel1|scaffold_318519 (3218-3048) | |
| 531-650, gnl|fr1|chrUn (3385484-3385617) | |
| 531-650, gnl|galGal2|chr2 (55244878-55245044) | |
| 531-650, gnl|hg17|chr9 (33334024-33334242) | |
| 531-650, gnl|Hg17|chr9 (33334067-33334186) | |
| 531-650, gnl|loxAfr1|scaffold_41606 (4362-4585) | |
| 531-650, gnl|mm7|chr4 (41143249-41143464) | |
| 531-650, gnl|Mm7|chr4 (41143289-41143408) | |
| 531-650, gnl|monDom2|scaffold_83 (5286319-5286145) | |
| 531-650, gnl|oryCun1|scaffold_209829 (271902-272128) | |
| 531-650, gnl|panTro1|chr11 (33833259-33833477) | |
| 531-650, gnl|rheMac2|chr15 (43882511-43882293) | |
| 531-650, gnl|rn3|chr5 (58401534-58401737) | |
| 531-650, gnl|tetNig1|chr6 (4836705-4836832) | |
| 531-650, gnl|xenTro1|scaffold_89 (1693874-1694088) | |
| 729-964, gnl|bosTau2|chr8 (40443918-40444153) | |
| 729-964, gnl|canFam2|chr11 (53477564-53477827) | |
| 729-964, gnl|danRer3|chr7 (29475531-29475784) | |
| 729-964, gnl|dasNov1|scaffold_38658 (7832-8097) | |
| 729-964, gnl|echTel1|scaffold_122550 (569-832) | |
| 729-964, gnl|fr1|chrUn (3385833-3386080) | |
| 729-964, gnl|galGal2|chr2 (55247140-55247381) | |
| 729-964, gnl|hg17|chr9 (33341544-33341808) | |
| 729-964, gnl|Hg17|chr9 (33341556-33341791) | |
| 729-964, gnl|loxAfr1|scaffold_41606 (7527-7791) | |
| 729-964, gnl|mm7|chr4 (41153652-41153911) | |
| 729-964, gnl|Mm7|chr4 (41153664-41153899) | |
| 729-964, gnl|monDom2|scaffold_83 (5279112-5278848) | |
| 729-964, gnl|oryCun1|scaffold_201857 (42772-43036) | |
| 729-964, gnl|panTro1|chr11 (33840775-33841039) | |
| 729-964, gnl|rheMac2|chr15 (43874883-43874619) | |
| 729-964, gnl|rn3|chr5 (58411453-58411712) | |
| 729-964, gnl|tetNig1|chr6 (4837045-4837276) | |
| 729-964, gnl|xenTro1|scaffold_89 (1702449-1702688) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-212, gnl|bosTau2|chr8 (40418584-40418795) | |
| 1-212, gnl|canFam2|chr11 (53453051-53453277) | |
| 1-212, gnl|danRer3|chr7 (29469491-29469711) | |
| 1-212, gnl|echTel1|scaffold_318519 (15480-15254) | |
| 1-212, gnl|fr1|chrUn (3384562-3384789) | |
| 1-212, gnl|galGal2|chr2 (55234568-55234795) | |
| 1-212, gnl|hg17|chr9 (33308907-33309134) | |
| 1-212, gnl|Hg17|chr9 (33308914-33309125) | |
| 1-212, gnl|loxAfr1|scaffold_14602 (26844-26618) | |
| 1-212, gnl|mm7|chr4 (41132425-41132652) | |
| 1-212, gnl|Mm7|chr4 (41132432-41132643) | |
| 1-212, gnl|monDom2|scaffold_83 (5309151-5308924) | |
| 1-212, gnl|oryCun1|scaffold_192536 (1731-1504) | |
| 1-212, gnl|panTro1|chr11 (33808028-33808255) | |
| 1-212, gnl|rheMac2|chr15 (43908034-43907807) | |
| 1-212, gnl|rn3|chr5 (58388118-58388345) | |
| 1-212, gnl|tetNig1|chr6 (4835784-4835999) | |
| 1-212, gnl|xenTro1|scaffold_89 (1668331-1668581) | |
| 531-650, gnl|bosTau2|chr8 (40439296-40439415) | |
| 531-650, gnl|canFam2|chr11 (53471885-53472103) | |
| 531-650, gnl|danRer3|chr7 (29475055-29475235) | |
| 531-650, gnl|echTel1|scaffold_318519 (3218-3048) | |
| 531-650, gnl|fr1|chrUn (3385484-3385617) | |
| 531-650, gnl|galGal2|chr2 (55244878-55245044) | |
| 531-650, gnl|hg17|chr9 (33334024-33334242) | |
| 531-650, gnl|Hg17|chr9 (33334067-33334186) | |
| 531-650, gnl|loxAfr1|scaffold_41606 (4362-4585) | |
| 531-650, gnl|mm7|chr4 (41143249-41143464) | |
| 531-650, gnl|Mm7|chr4 (41143289-41143408) | |
| 531-650, gnl|monDom2|scaffold_83 (5286319-5286145) | |
| 531-650, gnl|oryCun1|scaffold_209829 (271902-272128) | |
| 531-650, gnl|panTro1|chr11 (33833259-33833477) | |
| 531-650, gnl|rheMac2|chr15 (43882511-43882293) | |
| 531-650, gnl|rn3|chr5 (58401534-58401737) | |
| 531-650, gnl|tetNig1|chr6 (4836705-4836832) | |
| 531-650, gnl|xenTro1|scaffold_89 (1693874-1694088) | |
| 729-964, gnl|bosTau2|chr8 (40443918-40444153) | |
| 729-964, gnl|canFam2|chr11 (53477564-53477827) | |
| 729-964, gnl|danRer3|chr7 (29475531-29475784) | |
| 729-964, gnl|dasNov1|scaffold_38658 (7832-8097) | |
| 729-964, gnl|echTel1|scaffold_122550 (569-832) | |
| 729-964, gnl|fr1|chrUn (3385833-3386080) | |
| 729-964, gnl|galGal2|chr2 (55247140-55247381) | |
| 729-964, gnl|hg17|chr9 (33341544-33341808) | |
| 729-964, gnl|Hg17|chr9 (33341556-33341791) | |
| 729-964, gnl|loxAfr1|scaffold_41606 (7527-7791) | |
| 729-964, gnl|mm7|chr4 (41153652-41153911) | |
| 729-964, gnl|Mm7|chr4 (41153664-41153899) | |
| 729-964, gnl|monDom2|scaffold_83 (5279112-5278848) | |
| 729-964, gnl|oryCun1|scaffold_201857 (42772-43036) | |
| 729-964, gnl|panTro1|chr11 (33840775-33841039) | |
| 729-964, gnl|rheMac2|chr15 (43874883-43874619) | |
| 729-964, gnl|rn3|chr5 (58411453-58411712) | |
| 729-964, gnl|tetNig1|chr6 (4837045-4837276) | |
| 729-964, gnl|xenTro1|scaffold_89 (1702449-1702688) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ill (0.175593) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| lnt (0.142308) | |
| cty (0.10408) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| lnt (0.142308) | |
| cty (0.10408) |