Non-Coding RNA Search

Ss1.1-Lng1-LNG010016D01.5

Sequence:


               
               AGTCGGGCTGCTGGAGTGCGGCGCCACCGCGGGAGTCAGCGAGCCGGCTGCCGGGCGCGC
TGGCAAGGGGGTGGCGGCGAGGGCGCGGCGGCTGCGGTGTGCAGGGCAGGGGTCTGCAAG
GCTGCAGCCTCCTGAGGGCCAGCCTCGCCGAGACGGGAACTGGGTCTGAGCCCCGCGCAC
ACCAAAGACGAGGCGGCTGTGGCGGCAGCGGCGGCCCCAGCCATGCTGTGCTATGTGACG
AGGCCGGACGCGGTGCTGATGGAGGTGGAGGTGGAGGCGAAAGCCAATGGCGAGGACTGC
CTCAACCAGGTGTGCAGGCGATTGGGAATTATAGAAGTTGATTATTTTGGACTGCAATTT
ACGGGTAGCAAAGGTGAAAGTTTATGGCTAAATCTAAGAAATCGGATCTCCCAGCAGATG
GATGGGCTAGCCCCTTACCGGCTTAAACTGAGAGTCAAGTTCTTCGTGGAGCCTCATCTC
ATTTTACAGGAACAGACTAGGTAAAGTGACCCTAAAATAAACCAATGTCAAATAGACCTT
TGGTTCCGTTTAGGAAGGGGCCATTGCACCTCCCAGAGATGTTCACAGGCAAATTTGTTT
TGTTACAGAGCGAGTTGGTTCCTAACTCAGAAGTTTTCCACAGTTCTTTTGTTGAGATGA
AAAGAGAGGTGCATAGTTGGCCTGGGGTATGATTTCCAACTCTTCTGGTGTTTTTCTTGT
CTTTATAAACAGTGGGTGAGCAGGGCTGACTTTTTACACTTGATCAGTGCCACAACACAC
AAAAAAATCAAATAAAAAAAGAAAGAAAGGGACCAACTGACTTCCTGATAGCAGCATCTA
CTGTCCGATAGTAACCTCTGCCTCAGCAGTGTTACTATAGGTCATTGCAGACTGCTCTAA
CAGAAAGCAGGAAACAGTTCCTCTTGGGTTACTTAAACTTGGTCAACTTCTTCAGCCTAG
TGTCAGATTACAGTCTGTAGGAAGGAGCTCTGTCCGAGTAAATGCAGAATTTTAAAAGTT
TTTCAGTTTCTTGAAAACTTAGTAGGAAAACTTCTTTTAAGGCCAGTAGTAATCAAACTC
CACTCCACAGATGTGTTATGCATGATTGTTGAATTTGGATTGTTAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCGGGCTGCTGGAGTGCGGCGCCACCGCGGGAGTCAGCGAGCCGGCTGCCGGGCGCGC
TGGCAAGGGGGTGGCGGCGAGGGCGCGGCGGCTGCGGTGTGCAGGGCAGGGGTCTGCAAG
GCTGCAGCCTCCTGAGGGCCAGCCTCGCCGAGACGGGAACTGGGTCTGAGCCCCGCGCAC
ACCAAAGACGAGGCGGCTGTGGCGGCAGCGGCGGCCCCAGCCATGCTGTGCTATGTGACG
AGGCCGGACGCGGTGCTGATGGAGGTGGAGGTGGAGGCGAAAGCCAATGGCGAGGACTGC
CTCAACCAGGTGTGCAGGCGATTGGGAATTATAGAAGTTGATTATTTTGGACTGCAATTT
ACGGGTAGCAAAGGTGAAAGTTTATGGCTAAATCTAAGAAATCGGATCTCCCAGCAGATG
GATGGGCTAGCCCCTTACCGGCTTAAACTGAGAGTCAAGTTCTTCGTGGAGCCTCATCTC
ATTTTACAGGAACAGACTAGGTAAAGTGACCCTAAAATAAACCAATGTCAAATAGACCTT
TGGTTCCGTTTAGGAAGGGGCCATTGCACCTCCCAGAGATGTTCACAGGCAAATTTGTTT
TGTTACAGAGCGAGTTGGTTCCTAACTCAGAAGTTTTCCACAGTTCTTTTGTTGAGATGA
AAAGAGAGGTGCATAGTTGGCCTGGGGTATGATTTCCAACTCTTCTGGTGTTTTTCTTGT
CTTTATAAACAGTGGGTGAGCAGGGCTGACTTTTTACACTTGATCAGTGCCACAACACAC
AAAAAAATCAAATAAAAAAAGAAAGAAAGGGACCAACTGACTTCCTGATAGCAGCATCTA
CTGTCCGATAGTAACCTCTGCCTCAGCAGTGTTACTATAGGTCATTGCAGACTGCTCTAA
CAGAAAGCAGGAAACAGTTCCTCTTGGGTTACTTAAACTTGGTCAACTTCTTCAGCCTAG
TGTCAGATTACAGTCTGTAGGAAGGAGCTCTGTCCGAGTAAATGCAGAATTTTAAAAGTT
TTTCAGTTTCTTGAAAACTTAGTAGGAAAACTTCTTTTAAGGCCAGTAGTAATCAAACTC
CACTCCACAGATGTGTTATGCATGATTGTTGAATTTGGATTGTTAAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62858945|ref|NP_001017059.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62858945|ref|NP_001017059.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               771-921, - strand, RNAz p=0.983836

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               771-921, - strand, RNAz p=0.983836

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               308-1128, gnl|bosTau2|chr23 (36261185-36260377)
               

               
               308-1128, gnl|Hg17|chr6 (16238765-16239587)
               

               
               308-1128, gnl|Mm7|chr13 (44841089-44842009)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               308-1128, gnl|bosTau2|chr23 (36261185-36260377)
               

               
               308-1128, gnl|Hg17|chr6 (16238765-16239587)
               

               
               308-1128, gnl|Mm7|chr13 (44841089-44842009)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               jej (0.0989218)

	308-1128, gnl\|bosTau2\|chr23 (36261185-36260377)
	308-1128, gnl\|Hg17\|chr6 (16238765-16239587)
	308-1128, gnl\|Mm7\|chr13 (44841089-44842009)