Ss1.1-Lng1-LNG010016D10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCTGCGCGACTGGCGGAAGCTAGCTTTGCAATATGGCGGCTGAGGTAGATGGGCCGCTC AAACGGGTGTTGGTGCCGATTCTTTTACCTGAGAAATGCTACGACCAAATTTTCGTCCAG TGGGACTTGCTTCACGTTCCCTGCCTCAAGATTCTCCTCAGCAAATGCCTGGGGCTGGGC ATTGTGGCTGGCTCACTTCTGGTAAAACTGCCCCAAGTGTTTAAAATCCTGGGAGCCAAG AGTGCTGAAGGGCTGAGTCTCCAGTCGGTAATGCTGGAGCTGGTGGCACTGACTGGGACC ATGGTCTACAGCATCACCAACAACTTCCCCTTCAGCTCTTGGGGTGAAGCCCTGTTCCTG ATGCTCCAGACAGTCACCATCGCCTTCCTGGTCCTGCACTACAGAGGACAGACTGTGAGA GGTGTGGCTTTCCTAGCTTGCCATGCTGTGCTCCTGCTGATGCTGCTTTCACCACTGACG CCCCTGGCTCTAGTGACCCTGCTCCAGGCTTCCAACGTGCCTGCTGTTGTGGTGGGAAGG CTGATCCAGGCAGCCACCAACTACCGCAATGGGCACACGGGCCAGCTCTCAGCCATCACA GTCTTTCTGCTCTTTGGGGGCTCCCTGGCCCGCATCTTCACCTCCATTCAGGAAACTGGA GACCCTCTCCTGGCTGGAACCTTTGTAGTCTCTTCCCTCTGCAATGGCCTCATCGCTGCC CAGCTCCTCTTCTATTGGAATGCAAAGCCTCCCCACAAGAAGAAAAAGGAGCATTAGAGT CCAGCTGGCTACTGGCGTTTCCATTCCCCACCCAACCTCGGGGTCCTTCCCACATGAATC ACTTGCTGGTGTGACGTAACCATTCCCCATTCTGCAACTTTCGTGGAAATGCTTGGTTGA CCCAGATCCTTAGAAAGGATGGGGTAGAGATTTTCAGGCTATTTTGCCACTTAATGTGTG CAGCCCTGTGTATATACTGTTGATTCAGTGATTTGGCTGAGATTCTCCCTTTAGCAGGAA CTCCCAGCTATTTACTTATTCTGGGCAAAAGTCTTACCCTGTCCTTCCGTCTTCCCTTCT GACCCTAGAGGACAGAGCCTGAACAGTGGAAGGGACTTGTGGCTGCCGCCCCACCCTGGC CTGGCTCAGACTTCTGGACCCCAGTGCTCAGTGGCGGGTGGAGGAAGGGGGACAGAAAAA TGACTCAGGCAGGGCCCCAGGGTGGGGTGAGGAGGTTCCTGCTCTGGCAGGTCCAGGCGG AAGGGAGTGGAGACTGTGCTGGTTCCTGCTGCAGTAAAGGGGAACAGAGATGGAACAATA AAGACCCAGAGACATGGTTTAATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCTGCGCGACTGGCGGAAGCTAGCTTTGCAATATGGCGGCTGAGGTAGATGGGCCGCTC AAACGGGTGTTGGTGCCGATTCTTTTACCTGAGAAATGCTACGACCAAATTTTCGTCCAG TGGGACTTGCTTCACGTTCCCTGCCTCAAGATTCTCCTCAGCAAATGCCTGGGGCTGGGC ATTGTGGCTGGCTCACTTCTGGTAAAACTGCCCCAAGTGTTTAAAATCCTGGGAGCCAAG AGTGCTGAAGGGCTGAGTCTCCAGTCGGTAATGCTGGAGCTGGTGGCACTGACTGGGACC ATGGTCTACAGCATCACCAACAACTTCCCCTTCAGCTCTTGGGGTGAAGCCCTGTTCCTG ATGCTCCAGACAGTCACCATCGCCTTCCTGGTCCTGCACTACAGAGGACAGACTGTGAGA GGTGTGGCTTTCCTAGCTTGCCATGCTGTGCTCCTGCTGATGCTGCTTTCACCACTGACG CCCCTGGCTCTAGTGACCCTGCTCCAGGCTTCCAACGTGCCTGCTGTTGTGGTGGGAAGG CTGATCCAGGCAGCCACCAACTACCGCAATGGGCACACGGGCCAGCTCTCAGCCATCACA GTCTTTCTGCTCTTTGGGGGCTCCCTGGCCCGCATCTTCACCTCCATTCAGGAAACTGGA GACCCTCTCCTGGCTGGAACCTTTGTAGTCTCTTCCCTCTGCAATGGCCTCATCGCTGCC CAGCTCCTCTTCTATTGGAATGCAAAGCCTCCCCACAAGAAGAAAAAGGAGCATTAGAGT CCAGCTGGCTACTGGCGTTTCCATTCCCCACCCAACCTCGGGGTCCTTCCCACATGAATC ACTTGCTGGTGTGACGTAACCATTCCCCATTCTGCAACTTTCGTGGAAATGCTTGGTTGA CCCAGATCCTTAGAAAGGATGGGGTAGAGATTTTCAGGCTATTTTGCCACTTAATGTGTG CAGCCCTGTGTATATACTGTTGATTCAGTGATTTGGCTGAGATTCTCCCTTTAGCAGGAA CTCCCAGCTATTTACTTATTCTGGGCAAAAGTCTTACCCTGTCCTTCCGTCTTCCCTTCT GACCCTAGAGGACAGAGCCTGAACAGTGGAAGGGACTTGTGGCTGCCGCCCCACCCTGGC CTGGCTCAGACTTCTGGACCCCAGTGCTCAGTGGCGGGTGGAGGAAGGGGGACAGAAAAA TGACTCAGGCAGGGCCCCAGGGTGGGGTGAGGAGGTTCCTGCTCTGGCAGGTCCAGGCGG AAGGGAGTGGAGACTGTGCTGGTTCCTGCTGCAGTAAAGGGGAACAGAGATGGAACAATA AAGACCCAGAGACATGGTTTAATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 202-335, - strand, RNAz p=0.957707 | |
| 223-335, - strand, RNAz p=0.666905 | |
| 649-767, - strand, RNAz p=0.532116 | |
| 1131-1239, - strand, RNAz p=0.583111 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 202-335, - strand, RNAz p=0.957707 | |
| 223-335, - strand, RNAz p=0.666905 | |
| 649-767, - strand, RNAz p=0.532116 | |
| 1131-1239, - strand, RNAz p=0.583111 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-134, gnl|bosTau2|chr19 (13284534-13284667) | |
| 1-134, gnl|Hg17|chr17 (7427871-7428005) | |
| 1-134, gnl|Mm7|chr11 (69744182-69744045) | |
| 202-335, gnl|bosTau2|chr19 (13286059-13286192) | |
| 202-335, gnl|canFam2|chr5 (35501587-35501784) | |
| 202-335, gnl|danRer3|chrNA (102559523-102559368) | |
| 202-335, gnl|dasNov1|scaffold_74938 (5845-6040) | |
| 202-335, gnl|echTel1|scaffold_307048 (9264-9433) | |
| 202-335, gnl|fr1|chrUn (176692155-176692318) | |
| 202-335, gnl|hg17|chr17 (7429955-7430150) | |
| 202-335, gnl|Hg17|chr17 (7429987-7430120) | |
| 202-335, gnl|loxAfr1|scaffold_15742 (34627-34432) | |
| 202-335, gnl|mm7|chr11 (69740301-69740109) | |
| 202-335, gnl|Mm7|chr11 (69740273-69740140) | |
| 202-335, gnl|monDom2|scaffold_66 (4633331-4633520) | |
| 202-335, gnl|oryCun1|scaffold_204761 (47885-47705) | |
| 202-335, gnl|panTro1|chr19_random (44319759-44319564) | |
| 202-335, gnl|rheMac2|chr16 (7312644-7312839) | |
| 202-335, gnl|rn3|chr10 (56489705-56489517) | |
| 202-335, gnl|tetNig1|chrUn_random (117387995-117388152) | |
| 420-543, gnl|bosTau2|chr19 (13286731-13286854) | |
| 420-543, gnl|Hg17|chr17 (7430939-7431062) | |
| 420-543, gnl|Mm7|chr11 (69739419-69739296) | |
| 649-1343, gnl|bosTau2|chr19 (13287252-13287963) | |
| 649-1343, gnl|Hg17|chr17 (7431465-7432225) | |
| 649-1343, gnl|Mm7|chr11 (69738905-69738280) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-134, gnl|bosTau2|chr19 (13284534-13284667) | |
| 1-134, gnl|Hg17|chr17 (7427871-7428005) | |
| 1-134, gnl|Mm7|chr11 (69744182-69744045) | |
| 202-335, gnl|bosTau2|chr19 (13286059-13286192) | |
| 202-335, gnl|canFam2|chr5 (35501587-35501784) | |
| 202-335, gnl|danRer3|chrNA (102559523-102559368) | |
| 202-335, gnl|dasNov1|scaffold_74938 (5845-6040) | |
| 202-335, gnl|echTel1|scaffold_307048 (9264-9433) | |
| 202-335, gnl|fr1|chrUn (176692155-176692318) | |
| 202-335, gnl|hg17|chr17 (7429955-7430150) | |
| 202-335, gnl|Hg17|chr17 (7429987-7430120) | |
| 202-335, gnl|loxAfr1|scaffold_15742 (34627-34432) | |
| 202-335, gnl|mm7|chr11 (69740301-69740109) | |
| 202-335, gnl|Mm7|chr11 (69740273-69740140) | |
| 202-335, gnl|monDom2|scaffold_66 (4633331-4633520) | |
| 202-335, gnl|oryCun1|scaffold_204761 (47885-47705) | |
| 202-335, gnl|panTro1|chr19_random (44319759-44319564) | |
| 202-335, gnl|rheMac2|chr16 (7312644-7312839) | |
| 202-335, gnl|rn3|chr10 (56489705-56489517) | |
| 202-335, gnl|tetNig1|chrUn_random (117387995-117388152) | |
| 420-543, gnl|bosTau2|chr19 (13286731-13286854) | |
| 420-543, gnl|Hg17|chr17 (7430939-7431062) | |
| 420-543, gnl|Mm7|chr11 (69739419-69739296) | |
| 649-1343, gnl|bosTau2|chr19 (13287252-13287963) | |
| 649-1343, gnl|Hg17|chr17 (7431465-7432225) | |
| 649-1343, gnl|Mm7|chr11 (69738905-69738280) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| cag (0.302389) | |
| nmm (0.265604) | |
| col (0.195008) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| nco (0.161734) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| nca (0.136874) | |
| pla (0.133672) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.302389) | |
| nmm (0.265604) | |
| col (0.195008) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| nco (0.161734) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| nca (0.136874) | |
| pla (0.133672) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jej (0.0989218) | |
| eje (0.0988338) |