Ss1.1-Lng1-LNG010016D12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGGCGTGGCTAGCGAACAGCACGAGGTTCGCGCCAGGTCTCCGATCCCGGGGATGCTCC GCTGCGCCCGCGCCTGGAGGCTCCCCCATAGGGGGATCGGCCCCTCCAGTCCCAGCTTCT CCAGAGTGCCTGTTGCACTCAGCAGCAGCCAAGGCGGCACAGAGCCGAGGCCGGTGCCGC TTTCCTACAAGCTTTTGGACGGGGAGGTAGCCCGCCCGCCCCTCGTCTTTTTGCATGGGC TCTTTGGAAGCAAAGCCAACTTCAGCTCCATCGCCAAGGCCCTAGCCCAGCAGACTGGCA GGAGGGTGCTGACAGTGGATGCTCGAAACCATGGCGACAGCCCCCACAGCCCAGACATGA GCTACGAGGCCATGAGCCAGGATCTGCAGGACCTCCTGCCCCAGCTGGGCCTAGTGCCCT GCGTCCTCATTGGCCACAGCATGGGAGGCAAGACAGCCATGCTGCTGGCACTTCAAAGGC CAGAGCTGGTGGAGCGCCTGATTGTCGTGGACATTAGCCCAGTGGAGAGCACATCCAGCT CGAACTTTCCGAACTACGTAGCAGCCATGAAGGCCATAGACCTCCCGAATGGGGCATCCC TCTCCAGTGCCCGGAAACTGGCCAGTGAGAAGCTCAGCTCTGTCGTCCAGAGCATAAGCG TACGGCAGTTCCTTCTTACCAACCTGGTGGAGGTGGATGGGCACTTCGTGTGGAGAGTGA ACTTGGACGCTTTGTCCCAGCACTGGGACAAAATCTTGAACTTCCCACCACGGCAAGAAT CCTACTCTGGACCAGCCCTCTTCCTCATTGGTGGAAACTCTCAATTCGTGCTTCCCAGCC ACCACCCTGAGATTAGGCGGCTCTTCCCTCGGGCTCAGATGCAGACCTTGCCTAATGCTG ACATGAAACCCCAAACTTCAAGGCCCCGCAGGCTGCTCCTTGTTCCAGCACAGAAGGACT CAGGTGGGCACTGAGGGCACGAGGATGTAGAGGGGTTCAGACCTCAAACTTTAATGAATA TCCTTGTTCCAGCACAGAAGGACTCAGGTGGGCACTGAGGGCACGAGGATGTAGAGGGGT TCAGACCTCAAACTTTAATGAATAAACGTACTCTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGGCGTGGCTAGCGAACAGCACGAGGTTCGCGCCAGGTCTCCGATCCCGGGGATGCTCC GCTGCGCCCGCGCCTGGAGGCTCCCCCATAGGGGGATCGGCCCCTCCAGTCCCAGCTTCT CCAGAGTGCCTGTTGCACTCAGCAGCAGCCAAGGCGGCACAGAGCCGAGGCCGGTGCCGC TTTCCTACAAGCTTTTGGACGGGGAGGTAGCCCGCCCGCCCCTCGTCTTTTTGCATGGGC TCTTTGGAAGCAAAGCCAACTTCAGCTCCATCGCCAAGGCCCTAGCCCAGCAGACTGGCA GGAGGGTGCTGACAGTGGATGCTCGAAACCATGGCGACAGCCCCCACAGCCCAGACATGA GCTACGAGGCCATGAGCCAGGATCTGCAGGACCTCCTGCCCCAGCTGGGCCTAGTGCCCT GCGTCCTCATTGGCCACAGCATGGGAGGCAAGACAGCCATGCTGCTGGCACTTCAAAGGC CAGAGCTGGTGGAGCGCCTGATTGTCGTGGACATTAGCCCAGTGGAGAGCACATCCAGCT CGAACTTTCCGAACTACGTAGCAGCCATGAAGGCCATAGACCTCCCGAATGGGGCATCCC TCTCCAGTGCCCGGAAACTGGCCAGTGAGAAGCTCAGCTCTGTCGTCCAGAGCATAAGCG TACGGCAGTTCCTTCTTACCAACCTGGTGGAGGTGGATGGGCACTTCGTGTGGAGAGTGA ACTTGGACGCTTTGTCCCAGCACTGGGACAAAATCTTGAACTTCCCACCACGGCAAGAAT CCTACTCTGGACCAGCCCTCTTCCTCATTGGTGGAAACTCTCAATTCGTGCTTCCCAGCC ACCACCCTGAGATTAGGCGGCTCTTCCCTCGGGCTCAGATGCAGACCTTGCCTAATGCTG ACATGAAACCCCAAACTTCAAGGCCCCGCAGGCTGCTCCTTGTTCCAGCACAGAAGGACT CAGGTGGGCACTGAGGGCACGAGGATGTAGAGGGGTTCAGACCTCAAACTTTAATGAATA TCCTTGTTCCAGCACAGAAGGACTCAGGTGGGCACTGAGGGCACGAGGATGTAGAGGGGT TCAGACCTCAAACTTTAATGAATAAACGTACTCTTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 2-175, gnl|bosTau2|chr25 (30005926-30005752) | |
| 2-175, gnl|canFam2|chr6 (9552311-9552148) | |
| 2-175, gnl|dasNov1|scaffold_139852 (41448-41614) | |
| 2-175, gnl|echTel1|scaffold_314130 (86070-86187) | |
| 2-175, gnl|galGal2|chr19 (520577-520395) | |
| 2-175, gnl|hg17|chr7 (72597599-72597768) | |
| 2-175, gnl|Hg17|chr7 (72597830-72597621) | |
| 2-175, gnl|mm7|chr5 (133981149-133980983) | |
| 2-175, gnl|Mm7|chr5 (133980939-133981125) | |
| 2-175, gnl|monDom2|scaffold_77 (6169812-6169974) | |
| 2-175, gnl|panTro1|chr6 (74337003-74337172) | |
| 2-175, gnl|rheMac2|chr3 (51273117-51273283) | |
| 2-175, gnl|rn3|chr12_random (746070-746236) | |
| 305-479, gnl|bosTau2|chr25 (30004771-30004597) | |
| 305-479, gnl|canFam2|chr6 (9553428-9553237) | |
| 305-479, gnl|danRer3|chrNA (17115297-17115461) | |
| 305-479, gnl|dasNov1|scaffold_139852 (40439-40631) | |
| 305-479, gnl|echTel1|scaffold_314130 (85056-85247) | |
| 305-479, gnl|fr1|chrUn (44265091-44265284) | |
| 305-479, gnl|hg17|chr7 (72596539-72596730) | |
| 305-479, gnl|Hg17|chr7 (72596717-72596543) | |
| 305-479, gnl|loxAfr1|scaffold_160829 (858-693) | |
| 305-479, gnl|mm7|chr5 (133982346-133982156) | |
| 305-479, gnl|Mm7|chr5 (133982166-133982340) | |
| 305-479, gnl|monDom2|scaffold_77 (6168506-6168697) | |
| 305-479, gnl|panTro1|chr6 (74335945-74336136) | |
| 305-479, gnl|rheMac2|chr3 (51272089-51272280) | |
| 305-479, gnl|rn3|chr12_random (744750-744940) | |
| 305-479, gnl|tetNig1|chr7 (7731136-7731316) | |
| 648-832, gnl|bosTau2|chr25 (30004182-30003998) | |
| 648-832, gnl|Hg17|chr7 (72596094-72595910) | |
| 648-832, gnl|Mm7|chr5 (133982761-133982945) | |
| 900-1020, gnl|bosTau2|chr25 (30003618-30003495) | |
| 900-1020, gnl|Hg17|chr7 (72595438-72595092) | |
| 900-1020, gnl|Mm7|chr5 (133983322-133983432) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-175, gnl|bosTau2|chr25 (30005926-30005752) | |
| 2-175, gnl|canFam2|chr6 (9552311-9552148) | |
| 2-175, gnl|dasNov1|scaffold_139852 (41448-41614) | |
| 2-175, gnl|echTel1|scaffold_314130 (86070-86187) | |
| 2-175, gnl|galGal2|chr19 (520577-520395) | |
| 2-175, gnl|hg17|chr7 (72597599-72597768) | |
| 2-175, gnl|Hg17|chr7 (72597830-72597621) | |
| 2-175, gnl|mm7|chr5 (133981149-133980983) | |
| 2-175, gnl|Mm7|chr5 (133980939-133981125) | |
| 2-175, gnl|monDom2|scaffold_77 (6169812-6169974) | |
| 2-175, gnl|panTro1|chr6 (74337003-74337172) | |
| 2-175, gnl|rheMac2|chr3 (51273117-51273283) | |
| 2-175, gnl|rn3|chr12_random (746070-746236) | |
| 305-479, gnl|bosTau2|chr25 (30004771-30004597) | |
| 305-479, gnl|canFam2|chr6 (9553428-9553237) | |
| 305-479, gnl|danRer3|chrNA (17115297-17115461) | |
| 305-479, gnl|dasNov1|scaffold_139852 (40439-40631) | |
| 305-479, gnl|echTel1|scaffold_314130 (85056-85247) | |
| 305-479, gnl|fr1|chrUn (44265091-44265284) | |
| 305-479, gnl|hg17|chr7 (72596539-72596730) | |
| 305-479, gnl|Hg17|chr7 (72596717-72596543) | |
| 305-479, gnl|loxAfr1|scaffold_160829 (858-693) | |
| 305-479, gnl|mm7|chr5 (133982346-133982156) | |
| 305-479, gnl|Mm7|chr5 (133982166-133982340) | |
| 305-479, gnl|monDom2|scaffold_77 (6168506-6168697) | |
| 305-479, gnl|panTro1|chr6 (74335945-74336136) | |
| 305-479, gnl|rheMac2|chr3 (51272089-51272280) | |
| 305-479, gnl|rn3|chr12_random (744750-744940) | |
| 305-479, gnl|tetNig1|chr7 (7731136-7731316) | |
| 648-832, gnl|bosTau2|chr25 (30004182-30003998) | |
| 648-832, gnl|Hg17|chr7 (72596094-72595910) | |
| 648-832, gnl|Mm7|chr5 (133982761-133982945) | |
| 900-1020, gnl|bosTau2|chr25 (30003618-30003495) | |
| 900-1020, gnl|Hg17|chr7 (72595438-72595092) | |
| 900-1020, gnl|Mm7|chr5 (133983322-133983432) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| fcc (0.593354) | |
| hlv (0.417769) | |
| elu (0.385356) | |
| fbs (0.350693) | |
| fce (0.271592) | |
| eep (0.245128) | |
| mas (0.210305) | |
| nje (0.16592) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| che (0.136314) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.593354) | |
| hlv (0.417769) | |
| elu (0.385356) | |
| fbs (0.350693) | |
| fce (0.271592) | |
| eep (0.245128) | |
| mas (0.210305) | |
| nje (0.16592) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| che (0.136314) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |