Non-Coding RNA Search

Ss1.1-Lng1-LNG010016F03.5

Sequence:


               
               AGGAGCCGTCGCCGCCATTTCAAGACCGTGAGAGGTAGATGGCCAACCAGAGTTCTTAAG
GTTCGAAGCCTGTAACTGTTGCCGCCTCTTAAGCCTGCCAAAGCACTGGTACGGCTGCTG
CCCTCTTACTACTACCTCTAGAAACATTCTTGCCAGTAGTGGCGGCAGCGGGACTCAATT
ACCCTTTTCTCGCTTTTCCTAAAGAAGCTCCAGATGGCGTCTTCCGTGGGCAACGTGGCC
GACAGCACAGAACCAACGAAACGTATGCTTTCCTTCCAAGGGTTAGCTGAGTTGGCACAT
CGAGAATATCAGGCAGGAGATTTTGAGGCAGCTGAGAGACACTGCATGCAGCTCTGGAGA
CAAGAGCCAGACAATACTGGTGTGCTTTTATTACTTTCATCTATACACTTCCAGTGTCGA
AGGCTGGACAGATCTGCCCATTTTAGCACCCTGGCAATTAAACAGAACCCCCTCCTGGCA
GAAGCCTATTCAAATTTGGGGAATGTGTACAAGGAAAGAGGGCAGTTGCAGGAAGCAATT
GAGCATTACCGGCATGCATTGCGTCTCAAACCAGATTTCATCGATGGTTATATTAACCTG
GCAGCTGCATTGGTAGCAGCAGGCGACATGGAAGGGGCAGTACAAGCTTACGTCTCTGCT
CTTCAGTACAATCCTGATTTGTACTGTGTTCGCAGTGACCTGGGGAACCTGCTCAAAGCC
CTGGGTCGCTTGGAAGAAGCCAAGGTAGGTGTTTGATAGAACACATTTAAACAGCAGTGT
TATGGAAACTTGTACTTTTTGCCAAGTCTTCAACTCTTCGTTGAGCTATCTTCACAAAAC
AGTCCTATGAAACTGAGGAAAACTGACGGCATGAATCGCCTCAGACTAGAGCAGGGCCAG
GCTTTGGCATATCTGTTCTAAATCTGGGGGTAAAGCAAGAACCTGAACATTTTGGAGCCT
TTCTGCTGAGCTAGATCATCTTTATAACACTGGGCTCCGTCATGATCTTATGTGGGAATA
AATAACATTCCTTCAAATCTGAGGCTTGCCTGCTGGTGACAAGCAGAGCGCCTGTGATTT
GGCTCAAGACTCCTATATGATGCAGGTGCCATTGAAAATGCTGCTCTTCTAAGTCCTTTG
TGGCTTGTAAGTGGAGAAGAATTTCATCCAAATGTTACCCTGTAATACTGGCATTTAAAA
TTCTTATTTAACCTTCCTCCCTTCATCTTCCTCACCCTTTTTACAATGGAAGAAAGGCTA
TTAAATGATCGCAAATTAGTAATTGGAACATCCTGCCCCTTCTTGTCCCCACTCCCTTCC
CCAAGTTCCTTTTCCTCTTTTCCAATCCTAGTTGTCTACCTTCTTTTCTTCCTTACTTCC
TTCTTTTATTCCTCCCCGCCCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGCCGTCGCCGCCATTTCAAGACCGTGAGAGGTAGATGGCCAACCAGAGTTCTTAAG
GTTCGAAGCCTGTAACTGTTGCCGCCTCTTAAGCCTGCCAAAGCACTGGTACGGCTGCTG
CCCTCTTACTACTACCTCTAGAAACATTCTTGCCAGTAGTGGCGGCAGCGGGACTCAATT
ACCCTTTTCTCGCTTTTCCTAAAGAAGCTCCAGATGGCGTCTTCCGTGGGCAACGTGGCC
GACAGCACAGAACCAACGAAACGTATGCTTTCCTTCCAAGGGTTAGCTGAGTTGGCACAT
CGAGAATATCAGGCAGGAGATTTTGAGGCAGCTGAGAGACACTGCATGCAGCTCTGGAGA
CAAGAGCCAGACAATACTGGTGTGCTTTTATTACTTTCATCTATACACTTCCAGTGTCGA
AGGCTGGACAGATCTGCCCATTTTAGCACCCTGGCAATTAAACAGAACCCCCTCCTGGCA
GAAGCCTATTCAAATTTGGGGAATGTGTACAAGGAAAGAGGGCAGTTGCAGGAAGCAATT
GAGCATTACCGGCATGCATTGCGTCTCAAACCAGATTTCATCGATGGTTATATTAACCTG
GCAGCTGCATTGGTAGCAGCAGGCGACATGGAAGGGGCAGTACAAGCTTACGTCTCTGCT
CTTCAGTACAATCCTGATTTGTACTGTGTTCGCAGTGACCTGGGGAACCTGCTCAAAGCC
CTGGGTCGCTTGGAAGAAGCCAAGGTAGGTGTTTGATAGAACACATTTAAACAGCAGTGT
TATGGAAACTTGTACTTTTTGCCAAGTCTTCAACTCTTCGTTGAGCTATCTTCACAAAAC
AGTCCTATGAAACTGAGGAAAACTGACGGCATGAATCGCCTCAGACTAGAGCAGGGCCAG
GCTTTGGCATATCTGTTCTAAATCTGGGGGTAAAGCAAGAACCTGAACATTTTGGAGCCT
TTCTGCTGAGCTAGATCATCTTTATAACACTGGGCTCCGTCATGATCTTATGTGGGAATA
AATAACATTCCTTCAAATCTGAGGCTTGCCTGCTGGTGACAAGCAGAGCGCCTGTGATTT
GGCTCAAGACTCCTATATGATGCAGGTGCCATTGAAAATGCTGCTCTTCTAAGTCCTTTG
TGGCTTGTAAGTGGAGAAGAATTTCATCCAAATGTTACCCTGTAATACTGGCATTTAAAA
TTCTTATTTAACCTTCCTCCCTTCATCTTCCTCACCCTTTTTACAATGGAAGAAAGGCTA
TTAAATGATCGCAAATTAGTAATTGGAACATCCTGCCCCTTCTTGTCCCCACTCCCTTCC
CCAAGTTCCTTTTCCTCTTTTCCAATCCTAGTTGTCTACCTTCTTTTCTTCCTTACTTCC
TTCTTTTATTCCTCCCCGCCCCAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|33417250|gb|AAH55851.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|33417250|gb|AAH55851.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               80-199, + strand, RNAz p=0.992768
               

               
               992-1111, - strand, RNAz p=0.862879
               

               
               1152-1349, - strand, RNAz p=0.846733

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, + strand, RNAz p=0.992768
               

               
               992-1111, - strand, RNAz p=0.862879
               

               
               1152-1349, - strand, RNAz p=0.846733

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of AK026724, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK026724, +

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-250, gnl|bosTau2|chrX (23171690-23171445)
               

               
               1-250, gnl|Hg17|chrX (70535959-70536207)
               

               
               1-250, gnl|Mm7|chrX (96967432-96967677)
               


               
               676-1404, gnl|bosTau2|chrX (23157131-23156404)
               

               
               676-1404, gnl|Hg17|chrX (70547438-70548164)
               

               
               676-1404, gnl|Mm7|chrX (96979495-96980227)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-250, gnl|bosTau2|chrX (23171690-23171445)
               

               
               1-250, gnl|Hg17|chrX (70535959-70536207)
               

               
               1-250, gnl|Mm7|chrX (96967432-96967677)
               


               
               676-1404, gnl|bosTau2|chrX (23157131-23156404)
               

               
               676-1404, gnl|Hg17|chrX (70547438-70548164)
               

               
               676-1404, gnl|Mm7|chrX (96979495-96980227)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               spl (0.572738)
               

               
               thg (0.253582)
               

               
               eep (0.245128)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.572738)
               

               
               thg (0.253582)
               

               
               eep (0.245128)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	80-199, + strand, RNAz p=0.992768
	992-1111, - strand, RNAz p=0.862879
	1152-1349, - strand, RNAz p=0.846733

	1-250, gnl\|bosTau2\|chrX (23171690-23171445)
	1-250, gnl\|Hg17\|chrX (70535959-70536207)
	1-250, gnl\|Mm7\|chrX (96967432-96967677)

	676-1404, gnl\|bosTau2\|chrX (23157131-23156404)
	676-1404, gnl\|Hg17\|chrX (70547438-70548164)
	676-1404, gnl\|Mm7\|chrX (96979495-96980227)

	spl (0.572738)
	thg (0.253582)
	eep (0.245128)
	cbl (0.229595)
	tes (0.207814)
	sag (0.182715)
	sin (0.174948)
	tbr (0.154178)
	bla (0.124347)
	cty (0.10408)
	jej (0.0989218)