Ss1.1-Lng1-LNG010016F05.5
|
GCTCTTCCTTCAGCGGCAGCCATGGCAGGCCAAGAGGATCCCGTGCAGCGGGAGATTCAC
CAGGATTGGGCGAACCGGGAGTACATTGAAGTCATCACCAGCAGCATCAAGAAAATCGCA
GACTTTCTCAACTCGTTTGATATGTCTTGTCGTTCAAGACTCGCAACACTAAACGAGAAA
TTGACAGCTCTTGAACGGAGAATAGAGTACATTGAAGCAAGGGTGACAAAAGGTGAGACT
CTCACCTAGAACTGTGCCATGCTGCTGCTGGGAAGTTGCTTTTACAGAACATGGGCCCAC
GTGGGAAAGGCCCCAGCAGCCTTCAGCTCCTTCCTCTCTCCTTAAAGAACAACAGGGCTT
ATTCTTGTTTTTCTTTTTTTTTTCAAAAATGTGGCCTTTGGGCTCTGTGATGTACACCCA
GGAATGTGATGAGGCAGGTGGGGAGGAGTCCAGGGAAACTCTTGGAAACAACATTAAGCA
TTTTACCTTTTCAGTAACACTTTGTAGAACTCCTTGTCAACAAATTTGAGGCTCTAAGAG
CCAAAAGCCTGGGACTCTGTCAAGGTCCTCCCCATCTCTCTCTCTCTCTCTTAGCCTTTC
CTTACAGCTCTCATTGCCTCTGCACTGATCCTGTACACAGTCTTTGTCTCCTCCCCACCT
TTGGTCGGGGTGGGAAGCAGTCCTGGCCAAGACATTCCTACCCTGGCGAGGTGGCCGCCA
GAGAATGTTGTTGCCAACCCACCAGTTTCTTGTCCATTTGGGGAGGCCAAGGCCTCCCAC
TTGGCTTGAAAAGGGACATTTTCAGAATTTTCTTTCTGTCACTTGGGGTGTCTTTGCCTC
TCATATTTCCCTAATAAACTCCTCAACTTTATCTGACTGCTGTGATTGTGGTGGGGAGAG
GAGCTAGAGATGGGGCTCACCTTGTCCACAGAAATCTGATGTGTGGGATTCTTACTTACT
CCACTGTAAAACTTCTAGATGTAGCTATTTGATCAAAGCCTAGGTGGCTTGCCAGCTGGA
GCCCCCTTATTTGGACTTCGGAGCTGACTAATTTGTTTGGTCATTCATCAGACGTTTGCC
AAGTACTTACTATGTAGGCACTTTAAATTCCAATAAAAGATACAGTGTTGAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCTCTTCCTTCAGCGGCAGCCATGGCAGGCCAAGAGGATCCCGTGCAGCGGGAGATTCAC
CAGGATTGGGCGAACCGGGAGTACATTGAAGTCATCACCAGCAGCATCAAGAAAATCGCA
GACTTTCTCAACTCGTTTGATATGTCTTGTCGTTCAAGACTCGCAACACTAAACGAGAAA
TTGACAGCTCTTGAACGGAGAATAGAGTACATTGAAGCAAGGGTGACAAAAGGTGAGACT
CTCACCTAGAACTGTGCCATGCTGCTGCTGGGAAGTTGCTTTTACAGAACATGGGCCCAC
GTGGGAAAGGCCCCAGCAGCCTTCAGCTCCTTCCTCTCTCCTTAAAGAACAACAGGGCTT
ATTCTTGTTTTTCTTTTTTTTTTCAAAAATGTGGCCTTTGGGCTCTGTGATGTACACCCA
GGAATGTGATGAGGCAGGTGGGGAGGAGTCCAGGGAAACTCTTGGAAACAACATTAAGCA
TTTTACCTTTTCAGTAACACTTTGTAGAACTCCTTGTCAACAAATTTGAGGCTCTAAGAG
CCAAAAGCCTGGGACTCTGTCAAGGTCCTCCCCATCTCTCTCTCTCTCTCTTAGCCTTTC
CTTACAGCTCTCATTGCCTCTGCACTGATCCTGTACACAGTCTTTGTCTCCTCCCCACCT
TTGGTCGGGGTGGGAAGCAGTCCTGGCCAAGACATTCCTACCCTGGCGAGGTGGCCGCCA
GAGAATGTTGTTGCCAACCCACCAGTTTCTTGTCCATTTGGGGAGGCCAAGGCCTCCCAC
TTGGCTTGAAAAGGGACATTTTCAGAATTTTCTTTCTGTCACTTGGGGTGTCTTTGCCTC
TCATATTTCCCTAATAAACTCCTCAACTTTATCTGACTGCTGTGATTGTGGTGGGGAGAG
GAGCTAGAGATGGGGCTCACCTTGTCCACAGAAATCTGATGTGTGGGATTCTTACTTACT
CCACTGTAAAACTTCTAGATGTAGCTATTTGATCAAAGCCTAGGTGGCTTGCCAGCTGGA
GCCCCCTTATTTGGACTTCGGAGCTGACTAATTTGTTTGGTCATTCATCAGACGTTTGCC
AAGTACTTACTATGTAGGCACTTTAAATTCCAATAAAAGATACAGTGTTGAAAAAAAAAA |
|
gi|50344848|ref|NP_001002097.1| |
Protein identifier
|
gi|50344848|ref|NP_001002097.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
5' of AF281279, - |
|
5' of AF281279, - |
|
3' of NM_018462, + |
Human gene identifier and UTR site,
human gene reading direction
|
5' of AF281279, - |
|
5' of AF281279, - |
|
3' of NM_018462, + |
|
1-137, gnl|bosTau2|chr22 (12129259-12129395) |
|
1-137, gnl|canFam2|chr20 (11234025-11233935) |
|
1-137, gnl|danRer3|chr15 (17843340-17843404) |
|
1-137, gnl|dasNov1|scaffold_52066 (7240-7131) |
|
1-137, gnl|echTel1|scaffold_325473 (221171-221262) |
|
1-137, gnl|fr1|chrUn (44951713-44951778) |
|
1-137, gnl|hg17|chr3 (10132360-10132451) |
|
1-137, gnl|Hg17|chr3 (10132365-10132501) |
|
1-137, gnl|loxAfr1|scaffold_16930 (16297-16206) |
|
1-137, gnl|mm7|chr6 (113765683-113765774) |
|
1-137, gnl|Mm7|chr6 (113765688-113765824) |
|
1-137, gnl|monDom2|scaffold_5 (36858892-36858983) |
|
1-137, gnl|oryCun1|scaffold_171852 (7915-8006) |
|
1-137, gnl|panTro1|chr2 (10524101-10524192) |
|
1-137, gnl|rheMac2|chr14 (69203423-69203514) |
|
1-137, gnl|rn3|chr4 (149752569-149752660) |
|
1-137, gnl|xenTro1|scaffold_1092 (246217-246144) |
| |
|
222-1132, gnl|bosTau2|chr22 (12135912-12136821) |
|
222-1132, gnl|Hg17|chr3 (10142952-10143869) |
|
222-1132, gnl|Mm7|chr6 (113776994-113777876) |
| |
|
644-814, gnl|bosTau2|chr13 (51560814-51560651) |
|
644-814, gnl|Hg17|chr3 (10143371-10143519) |
|
644-814, gnl|Mm7|chr6 (113777408-113777543) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-137, gnl|bosTau2|chr22 (12129259-12129395) |
|
1-137, gnl|canFam2|chr20 (11234025-11233935) |
|
1-137, gnl|danRer3|chr15 (17843340-17843404) |
|
1-137, gnl|dasNov1|scaffold_52066 (7240-7131) |
|
1-137, gnl|echTel1|scaffold_325473 (221171-221262) |
|
1-137, gnl|fr1|chrUn (44951713-44951778) |
|
1-137, gnl|hg17|chr3 (10132360-10132451) |
|
1-137, gnl|Hg17|chr3 (10132365-10132501) |
|
1-137, gnl|loxAfr1|scaffold_16930 (16297-16206) |
|
1-137, gnl|mm7|chr6 (113765683-113765774) |
|
1-137, gnl|Mm7|chr6 (113765688-113765824) |
|
1-137, gnl|monDom2|scaffold_5 (36858892-36858983) |
|
1-137, gnl|oryCun1|scaffold_171852 (7915-8006) |
|
1-137, gnl|panTro1|chr2 (10524101-10524192) |
|
1-137, gnl|rheMac2|chr14 (69203423-69203514) |
|
1-137, gnl|rn3|chr4 (149752569-149752660) |
|
1-137, gnl|xenTro1|scaffold_1092 (246217-246144) |
| |
|
222-1132, gnl|bosTau2|chr22 (12135912-12136821) |
|
222-1132, gnl|Hg17|chr3 (10142952-10143869) |
|
222-1132, gnl|Mm7|chr6 (113776994-113777876) |
| |
|
644-814, gnl|bosTau2|chr13 (51560814-51560651) |
|
644-814, gnl|Hg17|chr3 (10143371-10143519) |
|
644-814, gnl|Mm7|chr6 (113777408-113777543) |
|
elu (0.770713) |
|
duo (0.691204) |
|
fcc (0.593354) |
|
nco (0.485201) |
|
ece (0.45861) |
|
lnt (0.426925) |
|
ese (0.379507) |
|
eep (0.367692) |
|
fbs (0.350693) |
|
mcp (0.341297) |
|
fhi (0.339155) |
|
nje (0.33184) |
|
cga (0.279096) |
|
nca (0.273748) |
|
pla (0.267344) |
|
nmm (0.265604) |
|
ute (0.265569) |
|
eru (0.240096) |
|
ebs (0.236602) |
|
med (0.232504) |
|
nms (0.213858) |
|
mas (0.210305) |
|
cty (0.20816) |
|
tes (0.207814) |
|
hea (0.204499) |
|
col (0.195008) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
fty (0.17584) |
|
eye (0.170503) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
csk (0.140746) |
|
ssp (0.13552) |
|
cov (0.132153) |
|
cbr (0.127975) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
elu (0.770713) |
|
duo (0.691204) |
|
fcc (0.593354) |
|
nco (0.485201) |
|
ece (0.45861) |
|
lnt (0.426925) |
|
ese (0.379507) |
|
eep (0.367692) |
|
fbs (0.350693) |
|
mcp (0.341297) |
|
fhi (0.339155) |
|
nje (0.33184) |
|
cga (0.279096) |
|
nca (0.273748) |
|
pla (0.267344) |
|
nmm (0.265604) |
|
ute (0.265569) |
|
eru (0.240096) |
|
ebs (0.236602) |
|
med (0.232504) |
|
nms (0.213858) |
|
mas (0.210305) |
|
cty (0.20816) |
|
tes (0.207814) |
|
hea (0.204499) |
|
col (0.195008) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
fty (0.17584) |
|
eye (0.170503) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
csk (0.140746) |
|
ssp (0.13552) |
|
cov (0.132153) |
|
cbr (0.127975) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
eje (0.0988338) |
