Non-Coding RNA Search

Ss1.1-Lng1-LNG010016G11.5

Sequence:


               
               CTCTTGCACGCCCTCTGCGGCAGGCTCCCATTCCTCCTCCTACTTTCTCCATTTTACTAG
TCCCTGCAGGATTTCGCTGGACTGTTTGGAGAAAGTGTCATGGAAGTTCTGCGTCCACAG
CTTCTAAGAATCGGTGGCCGGGTTTACAGGAAGAATCCCATCCAAGAACAGACTTATCAA
CATGAAGAAGAAGACGATGATTATTATCAAGGCCTCATGGAGTGCGCGGAAGAGCCCTGT
GAAGCCTACGAGGTGGTGCAGACCCCACAAGGTTTTCGGTGTACTGTGAAGGCCCCCAGT
CTGCTCTACAAGCATATAGTTGGCAAAAGAGGGGACACTCGGAAGAAATTAGAAGTGGAG
ACCAAAACTTCTATTACCATTCCTAAGCCTGGACAAGAAGGAGAAATTGTAATCACTGGT
CAGCATCGAAGTGGTGTAATTTCTGCCCGAACTCGGATTGATGTTCTTTTGCTCACTTTT
CGAAGAAAGCAGCCCTTCACTCACTTCCTTGCCTTTTTCCTCAATGAAGTTGAAGTTCAG
GAGCGATTTCTAAAGTTCCAGGAGGAAGTACTGGAGAAGTGCTCCATGGACCACGGGGTT
GATAGCACCATTTTCCAGAATCCTAAAAAGCTTCACCTAACTATTGGGATGTTGGTGCTT
TTGAGTGAGCAAGAGATCCAGCAGACCTGTGAGATGCTACAGCAGTGTAAAGAAGAATTC
ATTGATGACATTTCTGGGGGCAAACCCCTGGAAGTAGAGATGGCAGGGATAGAATACATG
AATGATGATCCTGGCATGGTGGATGTTCTTTATGCCAAAGTCCACATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTGCACGCCCTCTGCGGCAGGCTCCCATTCCTCCTCCTACTTTCTCCATTTTACTAG
TCCCTGCAGGATTTCGCTGGACTGTTTGGAGAAAGTGTCATGGAAGTTCTGCGTCCACAG
CTTCTAAGAATCGGTGGCCGGGTTTACAGGAAGAATCCCATCCAAGAACAGACTTATCAA
CATGAAGAAGAAGACGATGATTATTATCAAGGCCTCATGGAGTGCGCGGAAGAGCCCTGT
GAAGCCTACGAGGTGGTGCAGACCCCACAAGGTTTTCGGTGTACTGTGAAGGCCCCCAGT
CTGCTCTACAAGCATATAGTTGGCAAAAGAGGGGACACTCGGAAGAAATTAGAAGTGGAG
ACCAAAACTTCTATTACCATTCCTAAGCCTGGACAAGAAGGAGAAATTGTAATCACTGGT
CAGCATCGAAGTGGTGTAATTTCTGCCCGAACTCGGATTGATGTTCTTTTGCTCACTTTT
CGAAGAAAGCAGCCCTTCACTCACTTCCTTGCCTTTTTCCTCAATGAAGTTGAAGTTCAG
GAGCGATTTCTAAAGTTCCAGGAGGAAGTACTGGAGAAGTGCTCCATGGACCACGGGGTT
GATAGCACCATTTTCCAGAATCCTAAAAAGCTTCACCTAACTATTGGGATGTTGGTGCTT
TTGAGTGAGCAAGAGATCCAGCAGACCTGTGAGATGCTACAGCAGTGTAAAGAAGAATTC
ATTGATGACATTTCTGGGGGCAAACCCCTGGAAGTAGAGATGGCAGGGATAGAATACATG
AATGATGATCCTGGCATGGTGGATGTTCTTTATGCCAAAGTCCACATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55962023|emb|CAI15907.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55962023|emb|CAI15907.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               161-320, - strand, RNAz p=0.735853
               

               
               521-828, + strand, RNAz p=0.996507

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-320, - strand, RNAz p=0.735853
               

               
               521-828, + strand, RNAz p=0.996507

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               1-828, gnl|bosTau2|chr1 (81754549-81753728)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-828, gnl|bosTau2|chr1 (81754549-81753728)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               cov (0.132153)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               cov (0.132153)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

	161-320, - strand, RNAz p=0.735853
	521-828, + strand, RNAz p=0.996507

	ece (0.229305)
	nlu (0.191681)
	nep (0.183925)
	fhi (0.169578)
	cov (0.132153)
	bla (0.124347)
	jca (0.11396)