Ss1.1-Lng1-LNG010017D09.5
|
GACTCGCGCCGCCGGGGCTGCTGAGCTGACGGCGGCTGCCGGAGCCTCAGAATTACTCAT
TTATTCTTGAGACTCTTCTGCTCTCATCTGTCCTCATGGATGAACTTCAGGATGTTCAAC
TCACAGAGATCAAACCACTTCTAAATGATAAGAATGGTACACGAAACTTCCAGGACTTTG
ACTGTCAGGAACATGATATAGAAACAACTCATGGTGTGGTCCACGTCACTATAAGAGGCC
TACCGAAGGGAAACAGACCGGTTATTATGACATACCATGACATTGGCCTCAATCATAAAT
CCTGTTTCAATGCGTTCTTTAACTTTGAGGATATGCAAGAAATCACCCAGCACTTTGCTG
TCTGTCATGTGGATGCCCCAGGCCAGCAGGAAGGTGCACCCTCTTTCCCATCTGGGTACC
AGTACCCCACAATGGATGAGCTGGCCGAAATGCTGCCTTCTGTTCTCACCCACTTAAATC
TGAAAAGCATCATTGGGGTTGGAGTTGGAGCTGGAGCTTACATCCTCAGCAGATTTGCTC
TCAATCACCCAGAGCTTGTGGAAGGTCTCGTGCTCATTAACGTCGACCCTTGTGCTAAAG
GCTGGATTGACTGGGCAGCTTCCAAACTCTCAGGACTGACAACCAATGTTGTGGACATTA
TTTTGGCTCATCACTTTGGGCAGGAAGAGTTGCAAGCCAACCTGGACCTGATTCAAACCT
ACAGACTACATATTGCCCAAGATATCAACCAAGAAAACCTACAGCTCTTCCTGAGTTCTT
ATAACGGACGCAAAGACCTGGAGATTGAAAGACCCATCCTGGGACAAAATGATAACAAAT
CAAAGACATTAAAGTGTTCTACTTTATTGGTGGTAGGTGACAATTCACCTGCAGTTGAGG
CTGTGGTTGAATGCAATTCTCGCCTGAATCCTGTAAATACAACATTGCTAAAGATGGCAG
ACTGTGGTGGACTACCCCAAGTAGTTCAGCCTGGGAAGCTCACCGAGGCCTTCAAGTACT
TTTTGCAGGGAATGGGCTACATCCCATCTGCCAGCATGACCCGGCTCGCCCGATCACGAA
CCCACTCAACATCGAGTAGCATCGGCTCTGGAGAAAGTGCCTTCAGCCGATCTGTCACCA
GCAATCAGTCAGATGGAACTCAAGAATCTTCTGAGTCCCCTGATGTTCTGGACAGACACC
AGACCATGGAGGTGTCCTGCTAAGCAGATGCTCCTCCCCTGGACCATGCAAGTCCATCCT
CCTTCAAACGACCACTCCATAATATAACACTTCCTCCAGCAAACTGGCATCTATCTTTAA
CTCCTGCATGGCCACTCACTCTCTCTCTCTCTCTGGTATCCTGGATTTATCATCCTCTCT
GCCTGCCCACCCACCTTTTTGTATGTACCAAGAACCACTTCCATGTCATTACTAAAACAT
TCCATGTCTTTAGCTGCTCAGATCTCCATATCTTCTCTGGCCAGCTTCTCCCTGTGCTTT
CTCAACTATGTATCTAAGATTCTTTGATCCTGATGTATGTGTGTGAGCACGCGTGTCTGT
GTTTGTGTGTGCATAGTTCTGTGATTTTAGACATGCTTTCTTGTAGAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GACTCGCGCCGCCGGGGCTGCTGAGCTGACGGCGGCTGCCGGAGCCTCAGAATTACTCAT
TTATTCTTGAGACTCTTCTGCTCTCATCTGTCCTCATGGATGAACTTCAGGATGTTCAAC
TCACAGAGATCAAACCACTTCTAAATGATAAGAATGGTACACGAAACTTCCAGGACTTTG
ACTGTCAGGAACATGATATAGAAACAACTCATGGTGTGGTCCACGTCACTATAAGAGGCC
TACCGAAGGGAAACAGACCGGTTATTATGACATACCATGACATTGGCCTCAATCATAAAT
CCTGTTTCAATGCGTTCTTTAACTTTGAGGATATGCAAGAAATCACCCAGCACTTTGCTG
TCTGTCATGTGGATGCCCCAGGCCAGCAGGAAGGTGCACCCTCTTTCCCATCTGGGTACC
AGTACCCCACAATGGATGAGCTGGCCGAAATGCTGCCTTCTGTTCTCACCCACTTAAATC
TGAAAAGCATCATTGGGGTTGGAGTTGGAGCTGGAGCTTACATCCTCAGCAGATTTGCTC
TCAATCACCCAGAGCTTGTGGAAGGTCTCGTGCTCATTAACGTCGACCCTTGTGCTAAAG
GCTGGATTGACTGGGCAGCTTCCAAACTCTCAGGACTGACAACCAATGTTGTGGACATTA
TTTTGGCTCATCACTTTGGGCAGGAAGAGTTGCAAGCCAACCTGGACCTGATTCAAACCT
ACAGACTACATATTGCCCAAGATATCAACCAAGAAAACCTACAGCTCTTCCTGAGTTCTT
ATAACGGACGCAAAGACCTGGAGATTGAAAGACCCATCCTGGGACAAAATGATAACAAAT
CAAAGACATTAAAGTGTTCTACTTTATTGGTGGTAGGTGACAATTCACCTGCAGTTGAGG
CTGTGGTTGAATGCAATTCTCGCCTGAATCCTGTAAATACAACATTGCTAAAGATGGCAG
ACTGTGGTGGACTACCCCAAGTAGTTCAGCCTGGGAAGCTCACCGAGGCCTTCAAGTACT
TTTTGCAGGGAATGGGCTACATCCCATCTGCCAGCATGACCCGGCTCGCCCGATCACGAA
CCCACTCAACATCGAGTAGCATCGGCTCTGGAGAAAGTGCCTTCAGCCGATCTGTCACCA
GCAATCAGTCAGATGGAACTCAAGAATCTTCTGAGTCCCCTGATGTTCTGGACAGACACC
AGACCATGGAGGTGTCCTGCTAAGCAGATGCTCCTCCCCTGGACCATGCAAGTCCATCCT
CCTTCAAACGACCACTCCATAATATAACACTTCCTCCAGCAAACTGGCATCTATCTTTAA
CTCCTGCATGGCCACTCACTCTCTCTCTCTCTCTGGTATCCTGGATTTATCATCCTCTCT
GCCTGCCCACCCACCTTTTTGTATGTACCAAGAACCACTTCCATGTCATTACTAAAACAT
TCCATGTCTTTAGCTGCTCAGATCTCCATATCTTCTCTGGCCAGCTTCTCCCTGTGCTTT
CTCAACTATGTATCTAAGATTCTTTGATCCTGATGTATGTGTGTGAGCACGCGTGTCTGT
GTTTGTGTGTGCATAGTTCTGTGATTTTAGACATGCTTTCTTGTAGAG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
297-418, gnl|bosTau2|chr14 (3790191-3790312) |
|
297-418, gnl|Hg17|chr8 (134343590-134343469) |
|
297-418, gnl|Mm7|chr15 (67030229-67030108) |
| |
|
1038-1608, gnl|bosTau2|chr13 (44775445-44774876) |
|
1038-1608, gnl|canFam2|chr24 (28402055-28402468) |
|
1038-1608, gnl|dasNov1|scaffold_9909 (36290-36684) |
|
1038-1608, gnl|echTel1|scaffold_322550 (48518-48124) |
|
1038-1608, gnl|galGal2|chr20 (770926-770557) |
|
1038-1608, gnl|hg17|chr20 (34714920-34715320) |
|
1038-1608, gnl|Hg17|chr20 (34715523-34714951) |
|
1038-1608, gnl|loxAfr1|scaffold_9704 (53429-53812) |
|
1038-1608, gnl|mm7|chr2 (156669194-156669574) |
|
1038-1608, gnl|Mm7|chr2 (156669776-156669215) |
|
1038-1608, gnl|monDom2|scaffold_6 (10329107-10328729) |
|
1038-1608, gnl|oryCun1|scaffold_173151 (16332-16719) |
|
1038-1608, gnl|panTro1|chr21 (36951450-36951850) |
|
1038-1608, gnl|rheMac2|chr10 (27826809-27826404) |
|
1038-1608, gnl|rn3|chr3 (147360965-147361345) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
297-418, gnl|bosTau2|chr14 (3790191-3790312) |
|
297-418, gnl|Hg17|chr8 (134343590-134343469) |
|
297-418, gnl|Mm7|chr15 (67030229-67030108) |
| |
|
1038-1608, gnl|bosTau2|chr13 (44775445-44774876) |
|
1038-1608, gnl|canFam2|chr24 (28402055-28402468) |
|
1038-1608, gnl|dasNov1|scaffold_9909 (36290-36684) |
|
1038-1608, gnl|echTel1|scaffold_322550 (48518-48124) |
|
1038-1608, gnl|galGal2|chr20 (770926-770557) |
|
1038-1608, gnl|hg17|chr20 (34714920-34715320) |
|
1038-1608, gnl|Hg17|chr20 (34715523-34714951) |
|
1038-1608, gnl|loxAfr1|scaffold_9704 (53429-53812) |
|
1038-1608, gnl|mm7|chr2 (156669194-156669574) |
|
1038-1608, gnl|Mm7|chr2 (156669776-156669215) |
|
1038-1608, gnl|monDom2|scaffold_6 (10329107-10328729) |
|
1038-1608, gnl|oryCun1|scaffold_173151 (16332-16719) |
|
1038-1608, gnl|panTro1|chr21 (36951450-36951850) |
|
1038-1608, gnl|rheMac2|chr10 (27826809-27826404) |
|
1038-1608, gnl|rn3|chr3 (147360965-147361345) |
|
cbe (0.478469) |
|
hyp (0.42851) |
|
tes (0.207814) |
|
rec (0.17307) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
liv (0.146284) |
|
spl (0.143184) |
|
ecc (0.115035) |
|
spc (0.113366) |
|
cty (0.10408) |
|
eje (0.0988338) |
|
cbe (0.478469) |
|
hyp (0.42851) |
|
tes (0.207814) |
|
rec (0.17307) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
liv (0.146284) |
|
spl (0.143184) |
|
ecc (0.115035) |
|
spc (0.113366) |
|
cty (0.10408) |
|
eje (0.0988338) |
