Ss1.1-Lng1-LNG010017G06.5
|
AAGCCCAGACGGCCGCCGCCACTGCTGCAGGAGGCGTGAGGAGATAAAACACATTCAGAT
GGCCGATAACAGCTTTTCAGATGGGGTTCCTTCAGAGTCCTTGGAAGCTGCTAAAAATGC
AAGTAACACAGAAAAGCTCACAGACCAGGTGATGCAGAATCCTCAAGTTCTGGCGGCTTT
GCAGGAACGACTCGACAGCGTCTCACACACTCCTTCCAGCTACATCGAGACTTTACCTAA
GGCAGTGAAGCGAAGAATCAACGCGTTGAAGCAGCTGCAGGTGAAGTGCGCTCACATAGA
AGCCAAGTTCTACGAGGAAGTTCACGACTTGGAGAGGAAGTACGCGGCGCTGTACCAGCC
TCTCTTTGACAAGAGAAGGGAGTTCATCACGGGTGACGTTGAGCCGACAGATGCGGAGTC
GGAGTGGCACAGCGAGAACGAAGAGGAGGACAAACTGGCCGGAGACGTGAAAGATAAAGT
AGTCATAGCGGAAAAAGAAGCAGCAGCAGCAGAAGAGCCAAACCCCAAAGGAATTCCGGA
GTTCTGGTTCACCATCTTCAGAAACGTCGATATGCTGAGTGAGCTAGTGCAGGAATATGA
TGAGCCAATCTTGAAACACCTGCAGGATATCAAAGTGAAGTTTTCAGAGCCTGGACAGCC
TATGTCTTTCGTGTTAGAATTCCACTTTGAGCCCAACGACTACTTCAGCAACTCAGTCCT
GACCAAGACGTACAAGATGAAGTCAGAGCCGGACAAGGCCGATCCCTTTTCCTTTGAAGG
CCCTGAAATAGTTGACTGTGACGGGTGCGCCATTGACTGGAAGAAAGGCAAGAACGTGAC
GGTGAAAACCATCAAGAAGAAGCAGAAACACAAGGGCCGAGGCACCGTCAGGACCATCAC
CAAGCAGGTCCCCAGCGATTCCTTCTTCAACTTCTTCAGCCCGCTCAAAGCATCAGGGGA
CGGAGAGTCGCTGGATGAAGATTCCGAGTTCACCCTGGCCTCGGACTTTGAAATCGGCCA
CTTCTTCCGCGAGCGGATAGTCCCGCGCGCCGTGCTCTACTTCACCGGGGAGGCGATAGA
GGATGATGACAACTTTGAAGAAGGCGAGGAAGGAGAAGAGGAGGAACTAGAAGGTGACGA
GGAGGGAGAGGACGAGGACGATGCTGACGTGAACCCCAAGAAGGAGCCCAGCCAGCCCTC
GGAGTGCAAGCAGCAGTGAGACTCACCTGCCGTGCGGCCGCCCTCGCGTGGACAGAGCGC
ACGCCTGCCTTGCTTCCCGTGCATGATTCTCACTTTAACGTCTCCTTTTTCTTTGTTATT
TTGCTTAACCTGTACAGTGGCGACTCCGAGGCATTTCAGAAATAGGAGGTTTAATTCCAG
CCTCCTCTACAGCCTTGGGCACAGCGCCGTGGACGCGGCCGGGCCCTGCCTGTCTTGGGG
AGGCCCCCCAGAACGCAGCCGGCGGGGCCCCTTGACGCCAGGGGTACGTGGGCTGTGGCT
CTGGGGCACCCAGAGCCAGGACGGGCACCTGCTTCATTGGAGACCCACACGCCGCTCCAG
CTGCCTCGGGAGAGCCCTTCGCCTCTGGCTCTCCTTCCTGTGGTTCATTTTCCTCGGGGC
CCTGACCCTGTTCATCTCGTATTTATTTGTTCTTCACGCTGGCGAGGGCTCGGGACACGC
ACTGTCGCTTGTCCTTTGAGTTTCTGGAACCGTCTTGGGGCCAGAGACCCGGTGCCCTGG
GTGGGAGTTGGTGGTTGGGCTCCGGGACGAGGCGCGTGGAAGAAGCTGCTGCCTCCCGCC
GGCCGCCGGCAGGAGCCGGTTCTCATGACACGCGGACCACGCTTGGCTTGCGGGGAGGGG
GCTGCGGGCAGAGCCAGGATTTGCCCAGCGGCGGCAGTGGCGGCAGCGGCAACGCGGGGA
GGGGCTCAGCCCGGGAGCGGGAGCTCCCCCCTTAGTGCGTGAGTGTCCAGAGTTGCTTTC
ACCACAGCCCCCGTCCCCACACTCATCTTGTCCTAAAAGCCCTGGGTTCGGAGCGACGTG
TCCTTGGCGGGCGTGTGGGTTTCGGAGCGCGTGACCGCAGCTCCTGGCAGCCGGAGCCCC
GCGTCCTTGCTGTGGCCAGGCCTGTAGAGTGCTCAGCCTTCCTCACGATGCGTTTGTAAC
TGACTACGGTGTTTTCAATTTGTACAGAACAGTTAGAATATTCTATTAAAGTTGTGAAAC
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAGCCCAGACGGCCGCCGCCACTGCTGCAGGAGGCGTGAGGAGATAAAACACATTCAGAT
GGCCGATAACAGCTTTTCAGATGGGGTTCCTTCAGAGTCCTTGGAAGCTGCTAAAAATGC
AAGTAACACAGAAAAGCTCACAGACCAGGTGATGCAGAATCCTCAAGTTCTGGCGGCTTT
GCAGGAACGACTCGACAGCGTCTCACACACTCCTTCCAGCTACATCGAGACTTTACCTAA
GGCAGTGAAGCGAAGAATCAACGCGTTGAAGCAGCTGCAGGTGAAGTGCGCTCACATAGA
AGCCAAGTTCTACGAGGAAGTTCACGACTTGGAGAGGAAGTACGCGGCGCTGTACCAGCC
TCTCTTTGACAAGAGAAGGGAGTTCATCACGGGTGACGTTGAGCCGACAGATGCGGAGTC
GGAGTGGCACAGCGAGAACGAAGAGGAGGACAAACTGGCCGGAGACGTGAAAGATAAAGT
AGTCATAGCGGAAAAAGAAGCAGCAGCAGCAGAAGAGCCAAACCCCAAAGGAATTCCGGA
GTTCTGGTTCACCATCTTCAGAAACGTCGATATGCTGAGTGAGCTAGTGCAGGAATATGA
TGAGCCAATCTTGAAACACCTGCAGGATATCAAAGTGAAGTTTTCAGAGCCTGGACAGCC
TATGTCTTTCGTGTTAGAATTCCACTTTGAGCCCAACGACTACTTCAGCAACTCAGTCCT
GACCAAGACGTACAAGATGAAGTCAGAGCCGGACAAGGCCGATCCCTTTTCCTTTGAAGG
CCCTGAAATAGTTGACTGTGACGGGTGCGCCATTGACTGGAAGAAAGGCAAGAACGTGAC
GGTGAAAACCATCAAGAAGAAGCAGAAACACAAGGGCCGAGGCACCGTCAGGACCATCAC
CAAGCAGGTCCCCAGCGATTCCTTCTTCAACTTCTTCAGCCCGCTCAAAGCATCAGGGGA
CGGAGAGTCGCTGGATGAAGATTCCGAGTTCACCCTGGCCTCGGACTTTGAAATCGGCCA
CTTCTTCCGCGAGCGGATAGTCCCGCGCGCCGTGCTCTACTTCACCGGGGAGGCGATAGA
GGATGATGACAACTTTGAAGAAGGCGAGGAAGGAGAAGAGGAGGAACTAGAAGGTGACGA
GGAGGGAGAGGACGAGGACGATGCTGACGTGAACCCCAAGAAGGAGCCCAGCCAGCCCTC
GGAGTGCAAGCAGCAGTGAGACTCACCTGCCGTGCGGCCGCCCTCGCGTGGACAGAGCGC
ACGCCTGCCTTGCTTCCCGTGCATGATTCTCACTTTAACGTCTCCTTTTTCTTTGTTATT
TTGCTTAACCTGTACAGTGGCGACTCCGAGGCATTTCAGAAATAGGAGGTTTAATTCCAG
CCTCCTCTACAGCCTTGGGCACAGCGCCGTGGACGCGGCCGGGCCCTGCCTGTCTTGGGG
AGGCCCCCCAGAACGCAGCCGGCGGGGCCCCTTGACGCCAGGGGTACGTGGGCTGTGGCT
CTGGGGCACCCAGAGCCAGGACGGGCACCTGCTTCATTGGAGACCCACACGCCGCTCCAG
CTGCCTCGGGAGAGCCCTTCGCCTCTGGCTCTCCTTCCTGTGGTTCATTTTCCTCGGGGC
CCTGACCCTGTTCATCTCGTATTTATTTGTTCTTCACGCTGGCGAGGGCTCGGGACACGC
ACTGTCGCTTGTCCTTTGAGTTTCTGGAACCGTCTTGGGGCCAGAGACCCGGTGCCCTGG
GTGGGAGTTGGTGGTTGGGCTCCGGGACGAGGCGCGTGGAAGAAGCTGCTGCCTCCCGCC
GGCCGCCGGCAGGAGCCGGTTCTCATGACACGCGGACCACGCTTGGCTTGCGGGGAGGGG
GCTGCGGGCAGAGCCAGGATTTGCCCAGCGGCGGCAGTGGCGGCAGCGGCAACGCGGGGA
GGGGCTCAGCCCGGGAGCGGGAGCTCCCCCCTTAGTGCGTGAGTGTCCAGAGTTGCTTTC
ACCACAGCCCCCGTCCCCACACTCATCTTGTCCTAAAAGCCCTGGGTTCGGAGCGACGTG
TCCTTGGCGGGCGTGTGGGTTTCGGAGCGCGTGACCGCAGCTCCTGGCAGCCGGAGCCCC
GCGTCCTTGCTGTGGCCAGGCCTGTAGAGTGCTCAGCCTTCCTCACGATGCGTTTGTAAC
TGACTACGGTGTTTTCAATTTGTACAGAACAGTTAGAATATTCTATTAAAGTTGTGAAAC
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
135-1219, gnl|bosTau2|chr13 (25592792-25591717) |
|
135-1219, gnl|Hg17|chr13 (47235702-47236740) |
|
135-1219, gnl|Mm7|chr1 (135122030-135123010) |
| |
|
1630-1795, gnl|bosTau2|chr29 (43771194-43771034) |
|
1630-1795, gnl|canFam2|chr18 (49934069-49934632) |
|
1630-1795, gnl|dasNov1|scaffold_24938 (14738-14200) |
|
1630-1795, gnl|hg17|chr1 (116786542-116787065) |
|
1630-1795, gnl|Hg17|chr11 (2922803-2922640) |
|
1630-1795, gnl|loxAfr1|scaffold_10693 (52350-51786) |
|
1630-1795, gnl|mm7|chr7 (139940984-139941471) |
|
1630-1795, gnl|oryCun1|scaffold_175194 (3218-2765) |
|
1630-1795, gnl|panTro1|chr1 (116596860-116597383) |
|
1630-1795, gnl|rheMac2|chr1 (119505235-119505759) |
|
1630-1795, gnl|rn3|chr1 (204044372-204044847) |
| |
|
1807-2221, gnl|bosTau2|chr29 (43771052-43770672) |
|
1807-2221, gnl|Hg17|chr11 (2922665-2922247) |
|
1807-2221, gnl|Mm7|chr7 (139941262-139940867) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
135-1219, gnl|bosTau2|chr13 (25592792-25591717) |
|
135-1219, gnl|Hg17|chr13 (47235702-47236740) |
|
135-1219, gnl|Mm7|chr1 (135122030-135123010) |
| |
|
1630-1795, gnl|bosTau2|chr29 (43771194-43771034) |
|
1630-1795, gnl|canFam2|chr18 (49934069-49934632) |
|
1630-1795, gnl|dasNov1|scaffold_24938 (14738-14200) |
|
1630-1795, gnl|hg17|chr1 (116786542-116787065) |
|
1630-1795, gnl|Hg17|chr11 (2922803-2922640) |
|
1630-1795, gnl|loxAfr1|scaffold_10693 (52350-51786) |
|
1630-1795, gnl|mm7|chr7 (139940984-139941471) |
|
1630-1795, gnl|oryCun1|scaffold_175194 (3218-2765) |
|
1630-1795, gnl|panTro1|chr1 (116596860-116597383) |
|
1630-1795, gnl|rheMac2|chr1 (119505235-119505759) |
|
1630-1795, gnl|rn3|chr1 (204044372-204044847) |
| |
|
1807-2221, gnl|bosTau2|chr29 (43771052-43770672) |
|
1807-2221, gnl|Hg17|chr11 (2922665-2922247) |
|
1807-2221, gnl|Mm7|chr7 (139941262-139940867) |
|
cga (0.558191) |
|
hyp (0.42851) |
|
elu (0.385356) |
|
ill (0.351185) |
|
nco (0.323468) |
|
ese (0.253004) |
|
ecc (0.23007) |
|
mas (0.210305) |
|
jej (0.197844) |
|
nep (0.183925) |
|
fty (0.17584) |
|
csp (0.161186) |
|
cag (0.151194) |
|
nca (0.136874) |
|
eep (0.122564) |
|
eru (0.120048) |
|
clu (0.119646) |
|
med (0.116252) |
|
cga (0.558191) |
|
hyp (0.42851) |
|
elu (0.385356) |
|
ill (0.351185) |
|
nco (0.323468) |
|
ese (0.253004) |
|
ecc (0.23007) |
|
mas (0.210305) |
|
jej (0.197844) |
|
nep (0.183925) |
|
fty (0.17584) |
|
csp (0.161186) |
|
cag (0.151194) |
|
nca (0.136874) |
|
eep (0.122564) |
|
eru (0.120048) |
|
clu (0.119646) |
|
med (0.116252) |
