Ss1.1-Lng1-LNG010018F12.5
|
AATTATCCTACGTCTTAGGCTGCTTAAGGAAGGGGCTGTGCTTTCGGAATCCCTTCTGAG
CCAAGTAAGGAGGTCCCTCTCTTTGCCTCTCTCTCTTTTTTAAAGGACCTCATGAAATAA
AAGTGCCGAAAACAAACCCAGGCGCAAACCCAGGCGGCGGCGGCGGCGGCGGCGGCGGCA
GCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGGAGGAGGAGGA
AAGTAGGAGTTGGGGCAGCGCTCCGAGGTGGCTGGGCTCCGCGCAGCTCCCATTCATTAA
GCAACCAGCTGCGGAGGAAGGTGGCCGAGCGCCCGCGCTGCCCCCTCGCTGCTTTGCGCA
CGGACACGCCAGCTCCGCGCGTCCGGAGCAACGCAGCGCTGCAGAAGTTTCTGCTCGGGA
GTTGACTCTCTTCCCCTTGGACTTTCGAACGATTCGGGGTTGAGACAGGAAAAGCGGAGG
AGCACCAGGGAGCAGAAAGCACCACCGCCTGCCCTTGGAAGCGGGGCAGCGGGGCCGCAC
TCTCCCGCCGCGCCCCGAGAAGCCTCGGTCGGGAGGCGACCCCGGCGTCTGGGTGTGTGG
CTGCAGTCGTGGGGCGTCTTGGCCAGCGCCATGCAAAACTACAAGTACGACAAGGCTATC
GTCGCGGAGAGCAAGAACGGCGGCAGCCCGGCGCTCAATAACAACCCGAGGAAGGGCGGC
AGCAAGCGGGTGCTGCTCATCTGCCTGGACCTCTTCTGCCTCTTCATGGCGGGCCTGCCC
TTCATCATCATCGAGACAAGCACCATCAAGCCTTACCACCGGGGTTTTTATTGCAATGAC
GAGACCATCAAGTACCCGCTGAAAACCGGGGAGACAATCAATGATGCTGTGCTCTGCGCT
GTGGGCATTGTGATCGCCATCCTCGCGATCATCACGGGGGAATTCTACCGCATCTATTAC
CTGAAGGAGAAGTCCCGGTCGACAATCCAGAATCCCTATGTGGCAGCCCTCTATAAGCAA
GTGGGCTGCTTCCTCTTCGGCTGTGCCATCAGCCAGTCCTTCACGGACATTGCCAAGGTC
TCCATAGGGCGCCTGCGTCCTCACTTCTTGAGCGTCTGCAACCCCGATTTCAGCCAGATC
AACTGCTCCGAAGGCTACATCCAAAACTACAAGTGTAGAGGCGAGGACAGCAAAGTCCAG
GAAGCCAGGAAGTCCTTCTTCTCTGGCCATGCCTCCTTCTCCATGTACACTATGCTGTAT
CTGATGCTGTACCTGCAGGCCCGCTTCACTTGGCGAGGTGCCCGGCTGCTCCGGCCGCTC
CTGCAGTTCACCCTGATCATGATGGCCTTTTACACAGGACTGTCCCGTGTGTCTGATCAC
AAGCACCACCCCAGCGATGTCCTGGCTGGATTTGCTCAAGGAGCCCTGGTAGCCTGCTGC
ATAGTTTTCTTCGTGTCTGACCTCTTCAAGACCAAGACGACTCTGTCCCTGCCTCCCTCT
GCCATCAGGAAGGACATCCTTTCACCTGTGGACATTATCGACAGGAACAATCACCACAAC
ATGGTGTAGGCGCCGCCCAGCTCCTGAGCTGTTTTTGTGAAATGACTGCTGACAGCAAGT
GTTTGCTGCTCTCCAATCTCATCAGACAGTAGAATGTAGGGAAAAACTTTTTGCCCAACT
GATTTTTTTTTTAAAAAGGAAAAAAAAAAAAAAAAAAAAAAGTCTTACTTTGTGGCCTTC
CCAGATAGGTAGCGTTCACCTATGTGGAAACATCATCAGACTAACAGCCAGTGGGGGGGA
TCCTGGATGTGCACTCGGTTTACGTGTTCATGTTCTAGTGAACACGGGCTTGTTCTGGAA
CAAACACAAATGATTTTGAGTAGAGTCTGCGGGTCACCTGACCTCTGTGACCTGAGGGAT
CCCAGGCCTATGAGAACAGCTCAGATTCACATTGTAGCACACAGGACGCCGGTAATAGCA
CTGAATCAAGACAAAAATTAGCCATGGGGGGCTCCCCTCTTGGGTCTTTCTGTCCACACC
ACTCGATTCTCTACTGTGACTTGGGTTCAGGAAACTTGTTTCGTGTGTTCATTCGTTTTC
GATTGTTCTCAGCAGAAGGAAAGAGCACGTTTTCCAGTGATGGGATCCTGAATCCAAACT
CACAGTCGGGAGGCCTTATCACTCACTTCCTCAGCCCGCAGGCCAGCAACCACAGCCCCT
CACTTTAGTGATTAGGAGACTCTTTGTGGATGAGTGAATTTCACAAACAGCACAATTTCA
GAAGAGCCCGAGGGTGCAGGCCCTCCTGCGTCTTCTTTTCGACGCACCCTCCTGTGATGC
TGAAATGTCAATTGCAGGATGCTGGCGTTGTGTACAGCCGTTGCCCGGGCGCTGGCACAC
TCGTAGTGACAGTCAGCTTCGGGTCCGGCTTTCTCCCTTGAAACCCTTGCGGGGGGCCCA
CCCGGATTGCCTGTGAGGGTCCAGAGACGAGCAAAGACGTGGTCTGCCATCAGCTGATGG
AAAGCAGCCTTCCGTGTAAGAGACGGAGGGGTGAAGGGGGCTGAAAAATGGAGCAACCCT
TTGGCTACTCCGAAGTCGGAATGAGCCAGAGTAGCAGACGGTCTCACGTCCCAGAGGCTG
CCCTTCCAGATGACGGAGCTGATCCTCTGTGGGAGCCGCTCGTGCTAAGCCGTGTAAAGC
ACTATTGTCTTGGGGTTGATCTCTAGGGCAGTTCTTGGTAGGTTCTGCTGGGCAGAACAC
GTGGGTTAAATCTCCGTAGAGTTTCCTCGTCTTCTATCCCTAAGTGTCCTTCTAAGCAAG
GTCCCTCTCGAGGCAGCCGACAGGGACCACTTCTACTGAACCTTTGAGGAAAGAAGGAAG
GAAGAAATGCTTTCAGATCTCGGATGCAAACCTTTCAAAGGGCTACCTGTAACCACATGG
GTCAACCACATGCACATCCTTAATACAGAAGCCGTCCTTTCATTTCAACCTATAGCAAGC
TATGATTTTTATATATAAATATTATATAAATAATGTATAAAACATTAAAAGTTAACTATG
TAAAATATTATTTCTGAAACAATTTTAGCTGTATCCACTATGATTATAAACTGTGTCTCG
ACCTGTGTTATTTACATTAGCTGCTTAAAAAAGCATTGAGTTAATTTTTTTTAATATCAA
CTAAAAATATCGTAGTTCTGTGGTAGACATTGTTTTTACAATGAAAGAAATAACTGCAAC
TAGAGAAAACTGTATAAAAACATTAAATTGTCAGTATTTTTGTAAGGTTCCCTTTTGTAA
AGAGAATAATATTCAAAGACTTTTGTGGCACATACAAAGTGAAAACTTGTATCTGCGAAA
CTATACTTGTATTAAATGTGCTTTTTAAATAAAAGCTCACAAGGACTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AATTATCCTACGTCTTAGGCTGCTTAAGGAAGGGGCTGTGCTTTCGGAATCCCTTCTGAG
CCAAGTAAGGAGGTCCCTCTCTTTGCCTCTCTCTCTTTTTTAAAGGACCTCATGAAATAA
AAGTGCCGAAAACAAACCCAGGCGCAAACCCAGGCGGCGGCGGCGGCGGCGGCGGCGGCA
GCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGGAGGAGGAGGA
AAGTAGGAGTTGGGGCAGCGCTCCGAGGTGGCTGGGCTCCGCGCAGCTCCCATTCATTAA
GCAACCAGCTGCGGAGGAAGGTGGCCGAGCGCCCGCGCTGCCCCCTCGCTGCTTTGCGCA
CGGACACGCCAGCTCCGCGCGTCCGGAGCAACGCAGCGCTGCAGAAGTTTCTGCTCGGGA
GTTGACTCTCTTCCCCTTGGACTTTCGAACGATTCGGGGTTGAGACAGGAAAAGCGGAGG
AGCACCAGGGAGCAGAAAGCACCACCGCCTGCCCTTGGAAGCGGGGCAGCGGGGCCGCAC
TCTCCCGCCGCGCCCCGAGAAGCCTCGGTCGGGAGGCGACCCCGGCGTCTGGGTGTGTGG
CTGCAGTCGTGGGGCGTCTTGGCCAGCGCCATGCAAAACTACAAGTACGACAAGGCTATC
GTCGCGGAGAGCAAGAACGGCGGCAGCCCGGCGCTCAATAACAACCCGAGGAAGGGCGGC
AGCAAGCGGGTGCTGCTCATCTGCCTGGACCTCTTCTGCCTCTTCATGGCGGGCCTGCCC
TTCATCATCATCGAGACAAGCACCATCAAGCCTTACCACCGGGGTTTTTATTGCAATGAC
GAGACCATCAAGTACCCGCTGAAAACCGGGGAGACAATCAATGATGCTGTGCTCTGCGCT
GTGGGCATTGTGATCGCCATCCTCGCGATCATCACGGGGGAATTCTACCGCATCTATTAC
CTGAAGGAGAAGTCCCGGTCGACAATCCAGAATCCCTATGTGGCAGCCCTCTATAAGCAA
GTGGGCTGCTTCCTCTTCGGCTGTGCCATCAGCCAGTCCTTCACGGACATTGCCAAGGTC
TCCATAGGGCGCCTGCGTCCTCACTTCTTGAGCGTCTGCAACCCCGATTTCAGCCAGATC
AACTGCTCCGAAGGCTACATCCAAAACTACAAGTGTAGAGGCGAGGACAGCAAAGTCCAG
GAAGCCAGGAAGTCCTTCTTCTCTGGCCATGCCTCCTTCTCCATGTACACTATGCTGTAT
CTGATGCTGTACCTGCAGGCCCGCTTCACTTGGCGAGGTGCCCGGCTGCTCCGGCCGCTC
CTGCAGTTCACCCTGATCATGATGGCCTTTTACACAGGACTGTCCCGTGTGTCTGATCAC
AAGCACCACCCCAGCGATGTCCTGGCTGGATTTGCTCAAGGAGCCCTGGTAGCCTGCTGC
ATAGTTTTCTTCGTGTCTGACCTCTTCAAGACCAAGACGACTCTGTCCCTGCCTCCCTCT
GCCATCAGGAAGGACATCCTTTCACCTGTGGACATTATCGACAGGAACAATCACCACAAC
ATGGTGTAGGCGCCGCCCAGCTCCTGAGCTGTTTTTGTGAAATGACTGCTGACAGCAAGT
GTTTGCTGCTCTCCAATCTCATCAGACAGTAGAATGTAGGGAAAAACTTTTTGCCCAACT
GATTTTTTTTTTAAAAAGGAAAAAAAAAAAAAAAAAAAAAAGTCTTACTTTGTGGCCTTC
CCAGATAGGTAGCGTTCACCTATGTGGAAACATCATCAGACTAACAGCCAGTGGGGGGGA
TCCTGGATGTGCACTCGGTTTACGTGTTCATGTTCTAGTGAACACGGGCTTGTTCTGGAA
CAAACACAAATGATTTTGAGTAGAGTCTGCGGGTCACCTGACCTCTGTGACCTGAGGGAT
CCCAGGCCTATGAGAACAGCTCAGATTCACATTGTAGCACACAGGACGCCGGTAATAGCA
CTGAATCAAGACAAAAATTAGCCATGGGGGGCTCCCCTCTTGGGTCTTTCTGTCCACACC
ACTCGATTCTCTACTGTGACTTGGGTTCAGGAAACTTGTTTCGTGTGTTCATTCGTTTTC
GATTGTTCTCAGCAGAAGGAAAGAGCACGTTTTCCAGTGATGGGATCCTGAATCCAAACT
CACAGTCGGGAGGCCTTATCACTCACTTCCTCAGCCCGCAGGCCAGCAACCACAGCCCCT
CACTTTAGTGATTAGGAGACTCTTTGTGGATGAGTGAATTTCACAAACAGCACAATTTCA
GAAGAGCCCGAGGGTGCAGGCCCTCCTGCGTCTTCTTTTCGACGCACCCTCCTGTGATGC
TGAAATGTCAATTGCAGGATGCTGGCGTTGTGTACAGCCGTTGCCCGGGCGCTGGCACAC
TCGTAGTGACAGTCAGCTTCGGGTCCGGCTTTCTCCCTTGAAACCCTTGCGGGGGGCCCA
CCCGGATTGCCTGTGAGGGTCCAGAGACGAGCAAAGACGTGGTCTGCCATCAGCTGATGG
AAAGCAGCCTTCCGTGTAAGAGACGGAGGGGTGAAGGGGGCTGAAAAATGGAGCAACCCT
TTGGCTACTCCGAAGTCGGAATGAGCCAGAGTAGCAGACGGTCTCACGTCCCAGAGGCTG
CCCTTCCAGATGACGGAGCTGATCCTCTGTGGGAGCCGCTCGTGCTAAGCCGTGTAAAGC
ACTATTGTCTTGGGGTTGATCTCTAGGGCAGTTCTTGGTAGGTTCTGCTGGGCAGAACAC
GTGGGTTAAATCTCCGTAGAGTTTCCTCGTCTTCTATCCCTAAGTGTCCTTCTAAGCAAG
GTCCCTCTCGAGGCAGCCGACAGGGACCACTTCTACTGAACCTTTGAGGAAAGAAGGAAG
GAAGAAATGCTTTCAGATCTCGGATGCAAACCTTTCAAAGGGCTACCTGTAACCACATGG
GTCAACCACATGCACATCCTTAATACAGAAGCCGTCCTTTCATTTCAACCTATAGCAAGC
TATGATTTTTATATATAAATATTATATAAATAATGTATAAAACATTAAAAGTTAACTATG
TAAAATATTATTTCTGAAACAATTTTAGCTGTATCCACTATGATTATAAACTGTGTCTCG
ACCTGTGTTATTTACATTAGCTGCTTAAAAAAGCATTGAGTTAATTTTTTTTAATATCAA
CTAAAAATATCGTAGTTCTGTGGTAGACATTGTTTTTACAATGAAAGAAATAACTGCAAC
TAGAGAAAACTGTATAAAAACATTAAATTGTCAGTATTTTTGTAAGGTTCCCTTTTGTAA
AGAGAATAATATTCAAAGACTTTTGTGGCACATACAAAGTGAAAACTTGTATCTGCGAAA
CTATACTTGTATTAAATGTGCTTTTTAAATAAAAGCTCACAAGGACTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|29422123|gb|AAO84481.1| |
Protein identifier
|
gi|29422123|gb|AAO84481.1| |
|
1084-1203, - strand, RNAz p=0.600334 |
|
1739-1936, - strand, RNAz p=0.990525 |
|
2211-2407, - strand, RNAz p=0.999596 |
|
2525-2902, + strand, RNAz p=0.98832 |
|
3299-3409, - strand, RNAz p=0.965964 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1084-1203, - strand, RNAz p=0.600334 |
|
1739-1936, - strand, RNAz p=0.990525 |
|
2211-2407, - strand, RNAz p=0.999596 |
|
2525-2902, + strand, RNAz p=0.98832 |
|
3299-3409, - strand, RNAz p=0.965964 |
Human gene identifier and UTR site,
human gene reading direction
|
927-1209, gnl|bosTau2|chr7 (32553535-32553817) |
|
927-1209, gnl|canFam2|chr5 (55983938-55983741) |
|
927-1209, gnl|danRer3|chrUn (57840908-57841105) |
|
927-1209, gnl|dasNov1|scaffold_14588 (11346-11154) |
|
927-1209, gnl|echTel1|scaffold_276132 (74202-74005) |
|
927-1209, gnl|fr1|chrUn (57288684-57288488) |
|
927-1209, gnl|galGal2|chr8 (25958911-25959111) |
|
927-1209, gnl|hg17|chr1 (56701965-56702162) |
|
927-1209, gnl|Hg17|chr1 (56702248-56701969) |
|
927-1209, gnl|loxAfr1|scaffold_7536 (68599-68403) |
|
927-1209, gnl|mm7|chr4 (104585250-104585053) |
|
927-1209, gnl|Mm7|chr4 (104584962-104585244) |
|
927-1209, gnl|monDom2|scaffold_40 (19247183-19246976) |
|
927-1209, gnl|oryCun1|scaffold_89007 (1245-1048) |
|
927-1209, gnl|panTro1|chr1 (55042187-55042384) |
|
927-1209, gnl|rheMac2|chr1 (59392166-59392363) |
|
927-1209, gnl|rn3|chr5 (126177421-126177224) |
|
927-1209, gnl|tetNig1|chr1_random (2496709-2496903) |
|
927-1209, gnl|xenTro1|scaffold_1 (4719674-4719481) |
| |
|
1420-3409, gnl|bosTau2|chr7 (32579985-32581934) |
|
1420-3409, gnl|Hg17|chr1 (56674392-56672454) |
|
1420-3409, gnl|Mm7|chr4 (104607314-104609199) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
927-1209, gnl|bosTau2|chr7 (32553535-32553817) |
|
927-1209, gnl|canFam2|chr5 (55983938-55983741) |
|
927-1209, gnl|danRer3|chrUn (57840908-57841105) |
|
927-1209, gnl|dasNov1|scaffold_14588 (11346-11154) |
|
927-1209, gnl|echTel1|scaffold_276132 (74202-74005) |
|
927-1209, gnl|fr1|chrUn (57288684-57288488) |
|
927-1209, gnl|galGal2|chr8 (25958911-25959111) |
|
927-1209, gnl|hg17|chr1 (56701965-56702162) |
|
927-1209, gnl|Hg17|chr1 (56702248-56701969) |
|
927-1209, gnl|loxAfr1|scaffold_7536 (68599-68403) |
|
927-1209, gnl|mm7|chr4 (104585250-104585053) |
|
927-1209, gnl|Mm7|chr4 (104584962-104585244) |
|
927-1209, gnl|monDom2|scaffold_40 (19247183-19246976) |
|
927-1209, gnl|oryCun1|scaffold_89007 (1245-1048) |
|
927-1209, gnl|panTro1|chr1 (55042187-55042384) |
|
927-1209, gnl|rheMac2|chr1 (59392166-59392363) |
|
927-1209, gnl|rn3|chr5 (126177421-126177224) |
|
927-1209, gnl|tetNig1|chr1_random (2496709-2496903) |
|
927-1209, gnl|xenTro1|scaffold_1 (4719674-4719481) |
| |
|
1420-3409, gnl|bosTau2|chr7 (32579985-32581934) |
|
1420-3409, gnl|Hg17|chr1 (56674392-56672454) |
|
1420-3409, gnl|Mm7|chr4 (104607314-104609199) |
|
gul (6.74836) |
|
bla (2.1139) |
|
lyg (1.86344) |
|
cut (1.69924) |
|
aor (1.56219) |
|
rec (1.38456) |
|
mgp (1.38408) |
|
tra (1.35401) |
|
jca (1.25356) |
|
csk (0.985222) |
|
ret (0.901133) |
|
fat (0.884564) |
|
clu (0.837521) |
|
kid (0.778412) |
|
nlu (0.766724) |
|
sug (0.763747) |
|
ski (0.733676) |
|
liv (0.731422) |
|
eru (0.720288) |
|
cki (0.660939) |
|
fco (0.628832) |
|
sme (0.610874) |
|
isp (0.601504) |
|
bfe (0.599431) |
|
cmu (0.55918) |
|
fty (0.527519) |
|
cty (0.5204) |
|
ova (0.516529) |
|
pro (0.512033) |
|
ese (0.506009) |
|
mga (0.480615) |
|
che (0.408942) |
|
elu (0.385356) |
|
nep (0.36785) |
|
sag (0.36543) |
|
med (0.348756) |
|
cga (0.279096) |
|
nmm (0.265604) |
|
thg (0.253582) |
|
eep (0.245128) |
|
cbe (0.239234) |
|
ebs (0.236602) |
|
spc (0.226732) |
|
mas (0.210305) |
|
hea (0.204499) |
|
ldo (0.194005) |
|
mgm (0.180343) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
duo (0.172801) |
|
eye (0.170503) |
|
cje (0.165235) |
|
tbr (0.154178) |
|
lin (0.145603) |
|
pty (0.142714) |
|
hlv (0.139256) |
|
cov (0.132153) |
|
gul (6.74836) |
|
bla (2.1139) |
|
lyg (1.86344) |
|
cut (1.69924) |
|
aor (1.56219) |
|
rec (1.38456) |
|
mgp (1.38408) |
|
tra (1.35401) |
|
jca (1.25356) |
|
csk (0.985222) |
|
ret (0.901133) |
|
fat (0.884564) |
|
clu (0.837521) |
|
kid (0.778412) |
|
nlu (0.766724) |
|
sug (0.763747) |
|
ski (0.733676) |
|
liv (0.731422) |
|
eru (0.720288) |
|
cki (0.660939) |
|
fco (0.628832) |
|
sme (0.610874) |
|
isp (0.601504) |
|
bfe (0.599431) |
|
cmu (0.55918) |
|
fty (0.527519) |
|
cty (0.5204) |
|
ova (0.516529) |
|
pro (0.512033) |
|
ese (0.506009) |
|
mga (0.480615) |
|
che (0.408942) |
|
elu (0.385356) |
|
nep (0.36785) |
|
sag (0.36543) |
|
med (0.348756) |
|
cga (0.279096) |
|
nmm (0.265604) |
|
thg (0.253582) |
|
eep (0.245128) |
|
cbe (0.239234) |
|
ebs (0.236602) |
|
spc (0.226732) |
|
mas (0.210305) |
|
hea (0.204499) |
|
ldo (0.194005) |
|
mgm (0.180343) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
duo (0.172801) |
|
eye (0.170503) |
|
cje (0.165235) |
|
tbr (0.154178) |
|
lin (0.145603) |
|
pty (0.142714) |
|
hlv (0.139256) |
|
cov (0.132153) |
