Ss1.1-Lng1-LNG010018G02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGGGGGAGAGCAGCGAACATGGCGGCGGAGCGCGGCACGGGCCAGCAACAGTCGCAGGA GATGATGGAGGTTGACAGGCGGGTGGAGTCGGAAGAGTCGGGCGACGAAGAAGGGAAGAA GCAGAGCAGCGGGATAGTGGCCGACCTCAGCGAGCACAGCCTGAAGGATGGAGAGGAGCG GGGGCACGAGGAGCCCGAAGAAGGACAAGAGCCGCCTGTGGATATGGAAACCATTAACCT GGACCGAGACGCAGAGGATGTGGATTTGAATCACTACCGCATTGGGAAGATCGAAGGCTT TGAGGTGCTGCGGAAAGTGAAGACTCTCTGTCTTCGTCAGAATTTAATTAAATGCATTGA GAACCTGGAGGCGCTGCAGAGCCTTCGCGAGCTGGACCTTTACGACAACCAGATCCGGAA GATCGAGAACCTGGAGGCGCTGACGGAGCTGGAGATTCTTGATATTTCCTTCAATCTGCT GAGAAGCATCGAAGGGGTCGACAAGTTGACGCGGTTGAAGAAACTCTTCCTGGTGAACAA CAAGATAAATAAAATTGAGAACCTAAGCAGCCTACGTCAACTGCAGATGCTGGAGCTGGG ATCCAACCGCATCCGGGCAATTGAAAATGTCGACACGTTAACTAACCTGGAGAGTCTGTT TTTGGGGAAAAACAAGATCACAAAACTTCAGAACCTCGACGCGCTCACCAACCTGACGGT GCTCAGCATGCAGAGCAACCGGCTGACCAAGATCGAGGGCCTGCAGAGCCTGGTGAACCT GCGGGAGCTCTACCTCAGCCACAACGGCATCGAGGTCATCGAGGGCCTGGACAGCAACAA CAAGCTCACCATGTTGGACATCGCGTCGAACAGGATCAAAAAGATTGAAAACGTCAGCCA TCTAACCGAGCTGCAGGAATTCTGGATGAACGACAACCTCCTGGAGAGCTGGAGTGACCT GGATGAGCTCAAGGGCGCCAAGAGCCTGGAGACGGTGTACCTGGAGCGGAACCCCCTGCA GAAGGACCCCCAGTACCGGCGCAAGATCCTGCTGGCGCTGCCCACCGTGCGGCAGATCGA CGCCACCTTCGTCCGCTTCTGAGCCGCACCGCGGCCCCGGCCTCCCTCAGAAGAGCCTCC TGGCTGCGGTTTTTAATCCTCCCGTTGCTCCTGAGTCGTCACTATCGACAGTCACAAACG CAATGGCAATAAAAAGGCACCGAGTGAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGGGGGAGAGCAGCGAACATGGCGGCGGAGCGCGGCACGGGCCAGCAACAGTCGCAGGA GATGATGGAGGTTGACAGGCGGGTGGAGTCGGAAGAGTCGGGCGACGAAGAAGGGAAGAA GCAGAGCAGCGGGATAGTGGCCGACCTCAGCGAGCACAGCCTGAAGGATGGAGAGGAGCG GGGGCACGAGGAGCCCGAAGAAGGACAAGAGCCGCCTGTGGATATGGAAACCATTAACCT GGACCGAGACGCAGAGGATGTGGATTTGAATCACTACCGCATTGGGAAGATCGAAGGCTT TGAGGTGCTGCGGAAAGTGAAGACTCTCTGTCTTCGTCAGAATTTAATTAAATGCATTGA GAACCTGGAGGCGCTGCAGAGCCTTCGCGAGCTGGACCTTTACGACAACCAGATCCGGAA GATCGAGAACCTGGAGGCGCTGACGGAGCTGGAGATTCTTGATATTTCCTTCAATCTGCT GAGAAGCATCGAAGGGGTCGACAAGTTGACGCGGTTGAAGAAACTCTTCCTGGTGAACAA CAAGATAAATAAAATTGAGAACCTAAGCAGCCTACGTCAACTGCAGATGCTGGAGCTGGG ATCCAACCGCATCCGGGCAATTGAAAATGTCGACACGTTAACTAACCTGGAGAGTCTGTT TTTGGGGAAAAACAAGATCACAAAACTTCAGAACCTCGACGCGCTCACCAACCTGACGGT GCTCAGCATGCAGAGCAACCGGCTGACCAAGATCGAGGGCCTGCAGAGCCTGGTGAACCT GCGGGAGCTCTACCTCAGCCACAACGGCATCGAGGTCATCGAGGGCCTGGACAGCAACAA CAAGCTCACCATGTTGGACATCGCGTCGAACAGGATCAAAAAGATTGAAAACGTCAGCCA TCTAACCGAGCTGCAGGAATTCTGGATGAACGACAACCTCCTGGAGAGCTGGAGTGACCT GGATGAGCTCAAGGGCGCCAAGAGCCTGGAGACGGTGTACCTGGAGCGGAACCCCCTGCA GAAGGACCCCCAGTACCGGCGCAAGATCCTGCTGGCGCTGCCCACCGTGCGGCAGATCGA CGCCACCTTCGTCCGCTTCTGAGCCGCACCGCGGCCCCGGCCTCCCTCAGAAGAGCCTCC TGGCTGCGGTTTTTAATCCTCCCGTTGCTCCTGAGTCGTCACTATCGACAGTCACAAACG CAATGGCAATAAAAAGGCACCGAGTGAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
| 71-200, gnl|bosTau2|chr3 (82832839-82832710) | |
| 71-200, gnl|Hg17|chr2 (241812880-241813009) | |
| 71-200, gnl|Mm7|chr1 (93253964-93254096) | |
| 321-454, gnl|bosTau2|chr3 (82828602-82828469) | |
| 321-454, gnl|canFam2|chrUn (58531127-58531291) | |
| 321-454, gnl|danRer3|chr16 (16946982-16946824) | |
| 321-454, gnl|dasNov1|scaffold_38199 (7842-7668) | |
| 321-454, gnl|echTel1|scaffold_298326 (3848-3690) | |
| 321-454, gnl|fr1|chrUn (285413350-285413466) | |
| 321-454, gnl|galGal2|chr9 (8684853-8684679) | |
| 321-454, gnl|hg17|chr2 (241818597-241818773) | |
| 321-454, gnl|Hg17|chr2 (241818616-241818749) | |
| 321-454, gnl|loxAfr1|scaffold_79433 (484-642) | |
| 321-454, gnl|mm7|chr1 (93259298-93259470) | |
| 321-454, gnl|Mm7|chr1 (93259313-93259446) | |
| 321-454, gnl|monDom2|scaffold_69 (8506702-8506867) | |
| 321-454, gnl|panTro1|chr13 (133291145-133291321) | |
| 321-454, gnl|rheMac2|chr12 (105064519-105064694) | |
| 321-454, gnl|rn3|chr9 (92837457-92837627) | |
| 321-454, gnl|tetNig1|chr15 (6063825-6063973) | |
| 456-617, gnl|bosTau2|chr3 (82828137-82827976) | |
| 456-617, gnl|canFam2|chrUn (58531633-58531818) | |
| 456-617, gnl|danRer3|chr16 (16945842-16945665) | |
| 456-617, gnl|dasNov1|scaffold_78794 (3604-3419) | |
| 456-617, gnl|echTel1|scaffold_298326 (3230-3048) | |
| 456-617, gnl|fr1|chrUn (285413515-285413700) | |
| 456-617, gnl|galGal2|chr9 (8683881-8683696) | |
| 456-617, gnl|hg17|chr2 (241819723-241819908) | |
| 456-617, gnl|Hg17|chr2 (241819739-241819900) | |
| 456-617, gnl|loxAfr1|scaffold_79433 (1325-1510) | |
| 456-617, gnl|mm7|chr1 (93260312-93260497) | |
| 456-617, gnl|Mm7|chr1 (93260328-93260489) | |
| 456-617, gnl|monDom2|scaffold_69 (8507657-8507842) | |
| 456-617, gnl|oryCun1|scaffold_193073 (7217-7402) | |
| 456-617, gnl|panTro1|chr13 (133292265-133292450) | |
| 456-617, gnl|rheMac2|chr12 (105065651-105065836) | |
| 456-617, gnl|rn3|chr9 (92838563-92838748) | |
| 456-617, gnl|tetNig1|chr15 (6064063-6064243) | |
| 722-837, gnl|bosTau2|chr3 (82825952-82825837) | |
| 722-837, gnl|canFam2|chrUn (58534792-58534888) | |
| 722-837, gnl|danRer3|chr16 (16942617-16942526) | |
| 722-837, gnl|dasNov1|scaffold_186623 (215-308) | |
| 722-837, gnl|echTel1|scaffold_298326 (610-518) | |
| 722-837, gnl|fr1|chrUn (285413948-285414030) | |
| 722-837, gnl|galGal2|chr9 (8679360-8679264) | |
| 722-837, gnl|hg17|chr2 (241825723-241825819) | |
| 722-837, gnl|Hg17|chr2 (241825727-241825845) | |
| 722-837, gnl|loxAfr1|scaffold_79433 (4743-4836) | |
| 722-837, gnl|mm7|chr1 (93265558-93265643) | |
| 722-837, gnl|Mm7|chr1 (93265554-93265669) | |
| 722-837, gnl|monDom2|scaffold_69 (8513010-8513100) | |
| 722-837, gnl|oryCun1|scaffold_193073 (11769-11865) | |
| 722-837, gnl|panTro1|chr13 (133297722-133297818) | |
| 722-837, gnl|rheMac2|chr12 (105071692-105071788) | |
| 722-837, gnl|rn3|chr9 (92844237-92844319) | |
| 722-837, gnl|tetNig1|chr15 (6064503-6064585) | |
| 925-1228, gnl|bosTau2|chr3 (82820245-82819957) | |
| 925-1228, gnl|canFam2|chr25 (54155474-54155696) | |
| 925-1228, gnl|danRer3|chr16 (16938893-16938684) | |
| 925-1228, gnl|dasNov1|scaffold_229285 (1166-953) | |
| 925-1228, gnl|echTel1|scaffold_289499 (45625-45435) | |
| 925-1228, gnl|hg17|chr2 (241842020-241842240) | |
| 925-1228, gnl|Hg17|chr2 (241842051-241842364) | |
| 925-1228, gnl|loxAfr1|scaffold_54631 (5032-5216) | |
| 925-1228, gnl|mm7|chr1 (93272672-93272886) | |
| 925-1228, gnl|Mm7|chr1 (93272698-93273005) | |
| 925-1228, gnl|monDom2|scaffold_69 (8518717-8518931) | |
| 925-1228, gnl|oryCun1|scaffold_193073 (15978-16194) | |
| 925-1228, gnl|panTro1|chr13 (133314364-133314583) | |
| 925-1228, gnl|rheMac2|chr12 (105092847-105093066) | |
| 925-1228, gnl|rn3|chr9 (92851395-92851612) | |
| 925-1228, gnl|tetNig1|chr15 (6064896-6065097) | |
| 925-1228, gnl|xenTro1|scaffold_382 (1147512-1147727) |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 71-200, gnl|bosTau2|chr3 (82832839-82832710) | |
| 71-200, gnl|Hg17|chr2 (241812880-241813009) | |
| 71-200, gnl|Mm7|chr1 (93253964-93254096) | |
| 321-454, gnl|bosTau2|chr3 (82828602-82828469) | |
| 321-454, gnl|canFam2|chrUn (58531127-58531291) | |
| 321-454, gnl|danRer3|chr16 (16946982-16946824) | |
| 321-454, gnl|dasNov1|scaffold_38199 (7842-7668) | |
| 321-454, gnl|echTel1|scaffold_298326 (3848-3690) | |
| 321-454, gnl|fr1|chrUn (285413350-285413466) | |
| 321-454, gnl|galGal2|chr9 (8684853-8684679) | |
| 321-454, gnl|hg17|chr2 (241818597-241818773) | |
| 321-454, gnl|Hg17|chr2 (241818616-241818749) | |
| 321-454, gnl|loxAfr1|scaffold_79433 (484-642) | |
| 321-454, gnl|mm7|chr1 (93259298-93259470) | |
| 321-454, gnl|Mm7|chr1 (93259313-93259446) | |
| 321-454, gnl|monDom2|scaffold_69 (8506702-8506867) | |
| 321-454, gnl|panTro1|chr13 (133291145-133291321) | |
| 321-454, gnl|rheMac2|chr12 (105064519-105064694) | |
| 321-454, gnl|rn3|chr9 (92837457-92837627) | |
| 321-454, gnl|tetNig1|chr15 (6063825-6063973) | |
| 456-617, gnl|bosTau2|chr3 (82828137-82827976) | |
| 456-617, gnl|canFam2|chrUn (58531633-58531818) | |
| 456-617, gnl|danRer3|chr16 (16945842-16945665) | |
| 456-617, gnl|dasNov1|scaffold_78794 (3604-3419) | |
| 456-617, gnl|echTel1|scaffold_298326 (3230-3048) | |
| 456-617, gnl|fr1|chrUn (285413515-285413700) | |
| 456-617, gnl|galGal2|chr9 (8683881-8683696) | |
| 456-617, gnl|hg17|chr2 (241819723-241819908) | |
| 456-617, gnl|Hg17|chr2 (241819739-241819900) | |
| 456-617, gnl|loxAfr1|scaffold_79433 (1325-1510) | |
| 456-617, gnl|mm7|chr1 (93260312-93260497) | |
| 456-617, gnl|Mm7|chr1 (93260328-93260489) | |
| 456-617, gnl|monDom2|scaffold_69 (8507657-8507842) | |
| 456-617, gnl|oryCun1|scaffold_193073 (7217-7402) | |
| 456-617, gnl|panTro1|chr13 (133292265-133292450) | |
| 456-617, gnl|rheMac2|chr12 (105065651-105065836) | |
| 456-617, gnl|rn3|chr9 (92838563-92838748) | |
| 456-617, gnl|tetNig1|chr15 (6064063-6064243) | |
| 722-837, gnl|bosTau2|chr3 (82825952-82825837) | |
| 722-837, gnl|canFam2|chrUn (58534792-58534888) | |
| 722-837, gnl|danRer3|chr16 (16942617-16942526) | |
| 722-837, gnl|dasNov1|scaffold_186623 (215-308) | |
| 722-837, gnl|echTel1|scaffold_298326 (610-518) | |
| 722-837, gnl|fr1|chrUn (285413948-285414030) | |
| 722-837, gnl|galGal2|chr9 (8679360-8679264) | |
| 722-837, gnl|hg17|chr2 (241825723-241825819) | |
| 722-837, gnl|Hg17|chr2 (241825727-241825845) | |
| 722-837, gnl|loxAfr1|scaffold_79433 (4743-4836) | |
| 722-837, gnl|mm7|chr1 (93265558-93265643) | |
| 722-837, gnl|Mm7|chr1 (93265554-93265669) | |
| 722-837, gnl|monDom2|scaffold_69 (8513010-8513100) | |
| 722-837, gnl|oryCun1|scaffold_193073 (11769-11865) | |
| 722-837, gnl|panTro1|chr13 (133297722-133297818) | |
| 722-837, gnl|rheMac2|chr12 (105071692-105071788) | |
| 722-837, gnl|rn3|chr9 (92844237-92844319) | |
| 722-837, gnl|tetNig1|chr15 (6064503-6064585) | |
| 925-1228, gnl|bosTau2|chr3 (82820245-82819957) | |
| 925-1228, gnl|canFam2|chr25 (54155474-54155696) | |
| 925-1228, gnl|danRer3|chr16 (16938893-16938684) | |
| 925-1228, gnl|dasNov1|scaffold_229285 (1166-953) | |
| 925-1228, gnl|echTel1|scaffold_289499 (45625-45435) | |
| 925-1228, gnl|hg17|chr2 (241842020-241842240) | |
| 925-1228, gnl|Hg17|chr2 (241842051-241842364) | |
| 925-1228, gnl|loxAfr1|scaffold_54631 (5032-5216) | |
| 925-1228, gnl|mm7|chr1 (93272672-93272886) | |
| 925-1228, gnl|Mm7|chr1 (93272698-93273005) | |
| 925-1228, gnl|monDom2|scaffold_69 (8518717-8518931) | |
| 925-1228, gnl|oryCun1|scaffold_193073 (15978-16194) | |
| 925-1228, gnl|panTro1|chr13 (133314364-133314583) | |
| 925-1228, gnl|rheMac2|chr12 (105092847-105093066) | |
| 925-1228, gnl|rn3|chr9 (92851395-92851612) | |
| 925-1228, gnl|tetNig1|chr15 (6064896-6065097) | |
| 925-1228, gnl|xenTro1|scaffold_382 (1147512-1147727) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| elu (0.385356) | |
| eru (0.360144) | |
| eli (0.303628) | |
| cte (0.29274) | |
| nep (0.183925) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| cli (0.152812) | |
| cly (0.120642) | |
| jej (0.0989218) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| eru (0.360144) | |
| eli (0.303628) | |
| cte (0.29274) | |
| nep (0.183925) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| cli (0.152812) | |
| cly (0.120642) | |
| jej (0.0989218) |