Non-Coding RNA Search

Ss1.1-Lng1-LNG010018H01.5

Sequence:


               
               TTGACTACCTTTGCTTTCTGATTCATGTTTTGTGTGCATGCAACAGTTAGACATGTTTAG
AGTTAGGGTTTTCAGAGTGGACACTGCTTCACTCTGTAGAAAATGTTCCAGATGATGTTT
AGACATAGTCAGGCCTTTCTGAATTCTTCGCAGCTTAATATTGTGTACAACTCTCTTGAA
CAAGAGAAGAATTAGGAGACTTTTCTCCTTGAGAGCTTTCAGGGTTGGGAACCATTCTTT
TCTAATACATATATTCTTTAACATTGTTCTAATTCAGTAACTTGAAAAGTGGGATAATTT
TTAAAGCAAGAGATGAATGAGAAGGTGGGCCATAAGAATGTTTTATACTTTCTTCATTGT
GACAACAATGATTATGTTTTGTCATAACTGTAAATGCTTGAGATATAATGGATCCAGGGC
ATTCAGGGCAAGTATGTGTGGTCAATCCCCCCTCACCCCCCACAGTCCCGGACAAGTGAT
TTATGCCTTTCCTTTGATCAGGGGTCAAAATACAAAGACCAAGGGCCTAGAAATTGATTT
TTTTCTTTTTGGGCTGCCCCATACCATATGGAGTTCCTGGGCCAGAAATCAGATCAGAGC
CATAGCCGCAGCAGCAACTCCAGATCTTTAACCCACTGTATCCGGCCAGGGATCGAACCT
GCGTCCTGGTGCTGCAGCAACTCTGCCAATCCCCTTGCACCACAGTGGGAACTCCTAGAA
TTGAATTTCTAAACTCACTGCACTGATCCATCAGGAGCTTTTCAGTTAATATCCACGGTT
AGAGTCGATATAGCTTGAGTTTTTGCTTTTGCAGTTTTTCATAAGTTCACTCAAGAAAAA
TGCAGCTGTTCTAAACTGGAATTTTTCAGCATTCTTTTGCATGTTAAACAAGTAGAGAGT
TCAACTTTTATTTCTAACATATGCTCCTGATTCATTTCTTGGTAGTGTTTATAAAGAAAA
CTTACAGCACAAACATTTCGACATTAGATACTTGCCAAATTACCCTCCCAGAGGCAGAAT
GAAAGGGCATTTCAGCCTTTCTGAACTCGTTAAGAGTTTGTCCCCAGCTCTTCAATCCAG
GTGGCTGTTGCACTTGAGTGGATATTCTCCTTTTCTGTCTTTTACATCCGGCTCACCACT
TCTGAAATCCAGATCCCACACAAACACCCTTGCCATTAGGGCACTTGAAAACATATAGCA
GTATACAAACTTACTGAGTGCCTCTTACTCTTCGGTGACACATGGTTTCAAACATCTTTG
CCAAAAGCTAGGCAGTGATTATCTGAAAAGGCCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGACTACCTTTGCTTTCTGATTCATGTTTTGTGTGCATGCAACAGTTAGACATGTTTAG
AGTTAGGGTTTTCAGAGTGGACACTGCTTCACTCTGTAGAAAATGTTCCAGATGATGTTT
AGACATAGTCAGGCCTTTCTGAATTCTTCGCAGCTTAATATTGTGTACAACTCTCTTGAA
CAAGAGAAGAATTAGGAGACTTTTCTCCTTGAGAGCTTTCAGGGTTGGGAACCATTCTTT
TCTAATACATATATTCTTTAACATTGTTCTAATTCAGTAACTTGAAAAGTGGGATAATTT
TTAAAGCAAGAGATGAATGAGAAGGTGGGCCATAAGAATGTTTTATACTTTCTTCATTGT
GACAACAATGATTATGTTTTGTCATAACTGTAAATGCTTGAGATATAATGGATCCAGGGC
ATTCAGGGCAAGTATGTGTGGTCAATCCCCCCTCACCCCCCACAGTCCCGGACAAGTGAT
TTATGCCTTTCCTTTGATCAGGGGTCAAAATACAAAGACCAAGGGCCTAGAAATTGATTT
TTTTCTTTTTGGGCTGCCCCATACCATATGGAGTTCCTGGGCCAGAAATCAGATCAGAGC
CATAGCCGCAGCAGCAACTCCAGATCTTTAACCCACTGTATCCGGCCAGGGATCGAACCT
GCGTCCTGGTGCTGCAGCAACTCTGCCAATCCCCTTGCACCACAGTGGGAACTCCTAGAA
TTGAATTTCTAAACTCACTGCACTGATCCATCAGGAGCTTTTCAGTTAATATCCACGGTT
AGAGTCGATATAGCTTGAGTTTTTGCTTTTGCAGTTTTTCATAAGTTCACTCAAGAAAAA
TGCAGCTGTTCTAAACTGGAATTTTTCAGCATTCTTTTGCATGTTAAACAAGTAGAGAGT
TCAACTTTTATTTCTAACATATGCTCCTGATTCATTTCTTGGTAGTGTTTATAAAGAAAA
CTTACAGCACAAACATTTCGACATTAGATACTTGCCAAATTACCCTCCCAGAGGCAGAAT
GAAAGGGCATTTCAGCCTTTCTGAACTCGTTAAGAGTTTGTCCCCAGCTCTTCAATCCAG
GTGGCTGTTGCACTTGAGTGGATATTCTCCTTTTCTGTCTTTTACATCCGGCTCACCACT
TCTGAAATCCAGATCCCACACAAACACCCTTGCCATTAGGGCACTTGAAAACATATAGCA
GTATACAAACTTACTGAGTGCCTCTTACTCTTCGGTGACACATGGTTTCAAACATCTTTG
CCAAAAGCTAGGCAGTGATTATCTGAAAAGGCCATA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               5-542, gnl|bosTau2|chr4 (4262598-4262055)
               

               
               5-542, gnl|Hg17|chr7 (91887382-91886845)
               

               
               5-542, gnl|Mm7|chr5 (3528458-3529140)
               


               
               719-1296, gnl|bosTau2|chr4 (4262065-4261491)
               

               
               719-1296, gnl|Hg17|chr7 (91886855-91886271)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-542, gnl|bosTau2|chr4 (4262598-4262055)
               

               
               5-542, gnl|Hg17|chr7 (91887382-91886845)
               

               
               5-542, gnl|Mm7|chr5 (3528458-3529140)
               


               
               719-1296, gnl|bosTau2|chr4 (4262065-4261491)
               

               
               719-1296, gnl|Hg17|chr7 (91886855-91886271)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               sug (0.127291)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)

	5-542, gnl\|bosTau2\|chr4 (4262598-4262055)
	5-542, gnl\|Hg17\|chr7 (91887382-91886845)
	5-542, gnl\|Mm7\|chr5 (3528458-3529140)

	719-1296, gnl\|bosTau2\|chr4 (4262065-4261491)
	719-1296, gnl\|Hg17\|chr7 (91886855-91886271)