Ss1.1-Lng1-LNG010018H06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGCGAGCGTTTCGGTGACTCGCGGAGGCGGTGTGGTTGGGTCAGCTGCAGGCTACTGTG GGGCTGAGGGTACTGCGAAGCGGCCTGGTGCAGTGACCATGTTCCGAGCAGTGGCTCCGG TGCATCTCCGGCGGGCGGCCTCATCGCTACGATTTCAGAGTACCCTGGTAATAGCTGAGC ATGCAAATGATACCCTAGCACCCATTACATTAAATACCATCACTGCAGCCAAACGTCTTG GAGGTGAAGTGTCCTGCTTAGTAGCTGGAACCAAATGTGACAAGGTGGCACAAGATCTCT GCAAAGTAGCAGGTGTAGCGAAAGTTCTGGTGGCTCAGCATGATGCATACAAAGGCCTCC TTCCAGAGGAACTGACACCATTGGTTTTGGCAACTCAGAAGCAGTTTAATTATACACACA TCTGTGCTGGAGCATCTGCCTTTGGAAAGAACCTTTTGCCCCGAATAGCAGCCAAACTCG ATGTTGCCCCTATTTCTGACATCATTGCAATCAAATCACCTGACACATTTGTGAGACCTA TTTATGCAGGAAATGCTTTATGTACAGTGAAGTGTGATGAGAAAGTGAAGGTGTTTTCTG TCCGAGGAACATCTTTTGAAGCTGCAGCAACAAGTGGAGGTAGTGCCATTTCAGAAAAGG CATCAAGTGCGTCCCCAGTGGGGATATCAGAATGGCTTGACCAGAAATTAACAAAAAGTG ATCGACCAGAGCTGACAGGTGCCAAAGTGGTAGTTTCTGGTGGTCGGGGTTTGAAGAGTG GAGAGAACTTTAAGTTGTTGTACGATTTGGCAGATCAACTACATGCTGCAGTTGGTGCTT CTCGTGCAGCTGTTGATGCTGGCTTTGTTCCCAATGACATGCAAGTTGGACAGACAGGAA AAATAGTAGCACCTGAACTTTATATTGCTGTAGGAATATCTGGAGCCATCCAACATTTAG CTGGGATGAAAGACAGTAAGACAATTGTGGCTATTAACAAAGATCCAGAAGCTCCAATTT TTCAAGTGGCAGATTATGGAATAGTCGCAGATTTATTCAAGGTAGTTCCTGAAATGACTG AGCTATTGAAGAAAAAATGAGTCATGACCATGTCTTAAGAAGGAAAATTATATCCAAGTA TTGAGCTGAAAACATAAGAAATTCATGGCTAATATAACAATCATTGGAAAGCATGGAGAG CTGTATTTCATAATTTGATGAAAAATGCTAACGCATGTCAGAATGCTTTTTTATGGGGTT ATTATGTTTCTTCTTAATTATCTGTGGTTCCAAACAGTTATTTTTTGGAATTTTCTTATT CTGTAATAAAAATATAATAAACTTTTCCATAGAATTACAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGCGAGCGTTTCGGTGACTCGCGGAGGCGGTGTGGTTGGGTCAGCTGCAGGCTACTGTG GGGCTGAGGGTACTGCGAAGCGGCCTGGTGCAGTGACCATGTTCCGAGCAGTGGCTCCGG TGCATCTCCGGCGGGCGGCCTCATCGCTACGATTTCAGAGTACCCTGGTAATAGCTGAGC ATGCAAATGATACCCTAGCACCCATTACATTAAATACCATCACTGCAGCCAAACGTCTTG GAGGTGAAGTGTCCTGCTTAGTAGCTGGAACCAAATGTGACAAGGTGGCACAAGATCTCT GCAAAGTAGCAGGTGTAGCGAAAGTTCTGGTGGCTCAGCATGATGCATACAAAGGCCTCC TTCCAGAGGAACTGACACCATTGGTTTTGGCAACTCAGAAGCAGTTTAATTATACACACA TCTGTGCTGGAGCATCTGCCTTTGGAAAGAACCTTTTGCCCCGAATAGCAGCCAAACTCG ATGTTGCCCCTATTTCTGACATCATTGCAATCAAATCACCTGACACATTTGTGAGACCTA TTTATGCAGGAAATGCTTTATGTACAGTGAAGTGTGATGAGAAAGTGAAGGTGTTTTCTG TCCGAGGAACATCTTTTGAAGCTGCAGCAACAAGTGGAGGTAGTGCCATTTCAGAAAAGG CATCAAGTGCGTCCCCAGTGGGGATATCAGAATGGCTTGACCAGAAATTAACAAAAAGTG ATCGACCAGAGCTGACAGGTGCCAAAGTGGTAGTTTCTGGTGGTCGGGGTTTGAAGAGTG GAGAGAACTTTAAGTTGTTGTACGATTTGGCAGATCAACTACATGCTGCAGTTGGTGCTT CTCGTGCAGCTGTTGATGCTGGCTTTGTTCCCAATGACATGCAAGTTGGACAGACAGGAA AAATAGTAGCACCTGAACTTTATATTGCTGTAGGAATATCTGGAGCCATCCAACATTTAG CTGGGATGAAAGACAGTAAGACAATTGTGGCTATTAACAAAGATCCAGAAGCTCCAATTT TTCAAGTGGCAGATTATGGAATAGTCGCAGATTTATTCAAGGTAGTTCCTGAAATGACTG AGCTATTGAAGAAAAAATGAGTCATGACCATGTCTTAAGAAGGAAAATTATATCCAAGTA TTGAGCTGAAAACATAAGAAATTCATGGCTAATATAACAATCATTGGAAAGCATGGAGAG CTGTATTTCATAATTTGATGAAAAATGCTAACGCATGTCAGAATGCTTTTTTATGGGGTT ATTATGTTTCTTCTTAATTATCTGTGGTTCCAAACAGTTATTTTTTGGAATTTTCTTATT CTGTAATAAAAATATAATAAACTTTTCCATAGAATTACAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 139-287, gnl|bosTau2|chr10 (40989610-40989462) | |
| 139-287, gnl|canFam2|chr30 (42858774-42858623) | |
| 139-287, gnl|danRer3|chrUn (26456943-26456808) | |
| 139-287, gnl|echTel1|scaffold_322436 (48953-48809) | |
| 139-287, gnl|fr1|chrUn (201039369-201039518) | |
| 139-287, gnl|galGal2|chr10 (4159722-4159586) | |
| 139-287, gnl|hg17|chr15 (74374970-74375121) | |
| 139-287, gnl|Hg17|chr15 (74375132-74374984) | |
| 139-287, gnl|loxAfr1|scaffold_38560 (6871-6720) | |
| 139-287, gnl|mm7|chr9 (55529545-55529696) | |
| 139-287, gnl|Mm7|chr9 (55529707-55529559) | |
| 139-287, gnl|monDom2|scaffold_41 (17687319-17687470) | |
| 139-287, gnl|oryCun1|scaffold_204349 (14022-14173) | |
| 139-287, gnl|panTro1|chr16_random (24477402-24477251) | |
| 139-287, gnl|rheMac2|chr7 (55283037-55283188) | |
| 139-287, gnl|rn3|chr8 (59081090-59081241) | |
| 139-287, gnl|tetNig1|chr13 (6820306-6820155) | |
| 539-660, gnl|bosTau2|chr10 (40982691-40982569) | |
| 539-660, gnl|canFam2|chr30 (42868975-42868849) | |
| 539-660, gnl|danRer3|chrNA (175130280-175130395) | |
| 539-660, gnl|echTel1|scaffold_322436 (49335-49226) | |
| 539-660, gnl|fr1|chrUn (201038525-201038632) | |
| 539-660, gnl|galGal2|chr10 (4164749-4164622) | |
| 539-660, gnl|hg17|chr15 (74365766-74365892) | |
| 539-660, gnl|Hg17|chr15 (74365889-74365767) | |
| 539-660, gnl|loxAfr1|scaffold_38560 (16643-16516) | |
| 539-660, gnl|mm7|chr9 (55516943-55517069) | |
| 539-660, gnl|Mm7|chr9 (55517067-55516944) | |
| 539-660, gnl|monDom2|scaffold_41 (17677994-17678122) | |
| 539-660, gnl|oryCun1|scaffold_204349 (6349-6475) | |
| 539-660, gnl|panTro1|chr16_random (24486596-24486470) | |
| 539-660, gnl|rheMac2|chr7 (55273849-55273975) | |
| 539-660, gnl|rn3|chr8 (59068477-59068603) | |
| 539-660, gnl|tetNig1|chr13 (6821159-6821036) | |
| 1060-1360, gnl|bosTau2|chr21 (21018611-21018315) | |
| 1060-1360, gnl|Hg17|chr15 (74295995-74295693) | |
| 1060-1360, gnl|Mm7|chr9 (55484307-55484049) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 139-287, gnl|bosTau2|chr10 (40989610-40989462) | |
| 139-287, gnl|canFam2|chr30 (42858774-42858623) | |
| 139-287, gnl|danRer3|chrUn (26456943-26456808) | |
| 139-287, gnl|echTel1|scaffold_322436 (48953-48809) | |
| 139-287, gnl|fr1|chrUn (201039369-201039518) | |
| 139-287, gnl|galGal2|chr10 (4159722-4159586) | |
| 139-287, gnl|hg17|chr15 (74374970-74375121) | |
| 139-287, gnl|Hg17|chr15 (74375132-74374984) | |
| 139-287, gnl|loxAfr1|scaffold_38560 (6871-6720) | |
| 139-287, gnl|mm7|chr9 (55529545-55529696) | |
| 139-287, gnl|Mm7|chr9 (55529707-55529559) | |
| 139-287, gnl|monDom2|scaffold_41 (17687319-17687470) | |
| 139-287, gnl|oryCun1|scaffold_204349 (14022-14173) | |
| 139-287, gnl|panTro1|chr16_random (24477402-24477251) | |
| 139-287, gnl|rheMac2|chr7 (55283037-55283188) | |
| 139-287, gnl|rn3|chr8 (59081090-59081241) | |
| 139-287, gnl|tetNig1|chr13 (6820306-6820155) | |
| 539-660, gnl|bosTau2|chr10 (40982691-40982569) | |
| 539-660, gnl|canFam2|chr30 (42868975-42868849) | |
| 539-660, gnl|danRer3|chrNA (175130280-175130395) | |
| 539-660, gnl|echTel1|scaffold_322436 (49335-49226) | |
| 539-660, gnl|fr1|chrUn (201038525-201038632) | |
| 539-660, gnl|galGal2|chr10 (4164749-4164622) | |
| 539-660, gnl|hg17|chr15 (74365766-74365892) | |
| 539-660, gnl|Hg17|chr15 (74365889-74365767) | |
| 539-660, gnl|loxAfr1|scaffold_38560 (16643-16516) | |
| 539-660, gnl|mm7|chr9 (55516943-55517069) | |
| 539-660, gnl|Mm7|chr9 (55517067-55516944) | |
| 539-660, gnl|monDom2|scaffold_41 (17677994-17678122) | |
| 539-660, gnl|oryCun1|scaffold_204349 (6349-6475) | |
| 539-660, gnl|panTro1|chr16_random (24486596-24486470) | |
| 539-660, gnl|rheMac2|chr7 (55273849-55273975) | |
| 539-660, gnl|rn3|chr8 (59068477-59068603) | |
| 539-660, gnl|tetNig1|chr13 (6821159-6821036) | |
| 1060-1360, gnl|bosTau2|chr21 (21018611-21018315) | |
| 1060-1360, gnl|Hg17|chr15 (74295995-74295693) | |
| 1060-1360, gnl|Mm7|chr9 (55484307-55484049) |
| Expressed library(ies): 63 entry(ies) | More info |
| Expressed library(ies): 63 entry(ies) | Help | Less info |
| vin (3.32557) | |
| isp (2.10526) | |
| pro (2.04813) | |
| bfe (1.94815) | |
| lun (1.50489) | |
| ssp (1.3552) | |
| hea (1.22699) | |
| kid (1.03788) | |
| tbr (0.925069) | |
| spc (0.906927) | |
| ski (0.880411) | |
| lyg (0.798616) | |
| sug (0.763747) | |
| lin (0.728014) | |
| sin (0.69979) | |
| ldo (0.679018) | |
| ste (0.676041) | |
| cki (0.660939) | |
| ova (0.645661) | |
| mas (0.630915) | |
| sme (0.610874) | |
| sto (0.539471) | |
| cty (0.5204) | |
| duo (0.518403) | |
| thg (0.507164) | |
| fco (0.471624) | |
| mgp (0.461361) | |
| spl (0.429553) | |
| lnt (0.426925) | |
| tra (0.369276) | |
| sag (0.36543) | |
| mgm (0.360685) | |
| pgl (0.35545) | |
| gul (0.355177) | |
| cut (0.339847) | |
| liv (0.292569) | |
| csk (0.281492) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| nca (0.273748) | |
| ret (0.257467) | |
| bla (0.248694) | |
| eru (0.240096) | |
| pan (0.23596) | |
| cbl (0.229595) | |
| nms (0.213858) | |
| fli (0.202881) | |
| eje (0.197668) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nje (0.16592) | |
| nco (0.161734) | |
| mga (0.160205) | |
| ctl (0.153069) | |
| cli (0.152812) | |
| fat (0.147427) | |
| pty (0.142714) | |
| che (0.136314) | |
| ese (0.126502) | |
| eep (0.122564) | |
| clu (0.119646) |
| Expressed library(ies): 63 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (3.32557) | |
| isp (2.10526) | |
| pro (2.04813) | |
| bfe (1.94815) | |
| lun (1.50489) | |
| ssp (1.3552) | |
| hea (1.22699) | |
| kid (1.03788) | |
| tbr (0.925069) | |
| spc (0.906927) | |
| ski (0.880411) | |
| lyg (0.798616) | |
| sug (0.763747) | |
| lin (0.728014) | |
| sin (0.69979) | |
| ldo (0.679018) | |
| ste (0.676041) | |
| cki (0.660939) | |
| ova (0.645661) | |
| mas (0.630915) | |
| sme (0.610874) | |
| sto (0.539471) | |
| cty (0.5204) | |
| duo (0.518403) | |
| thg (0.507164) | |
| fco (0.471624) | |
| mgp (0.461361) | |
| spl (0.429553) | |
| lnt (0.426925) | |
| tra (0.369276) | |
| sag (0.36543) | |
| mgm (0.360685) | |
| pgl (0.35545) | |
| gul (0.355177) | |
| cut (0.339847) | |
| liv (0.292569) | |
| csk (0.281492) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| nca (0.273748) | |
| ret (0.257467) | |
| bla (0.248694) | |
| eru (0.240096) | |
| pan (0.23596) | |
| cbl (0.229595) | |
| nms (0.213858) | |
| fli (0.202881) | |
| eje (0.197668) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nje (0.16592) | |
| nco (0.161734) | |
| mga (0.160205) | |
| ctl (0.153069) | |
| cli (0.152812) | |
| fat (0.147427) | |
| pty (0.142714) | |
| che (0.136314) | |
| ese (0.126502) | |
| eep (0.122564) | |
| clu (0.119646) |