Non-Coding RNA Search

Ss1.1-Lng1-LNG010019C12.5

Sequence:


               
               CCAAGATACTGTTGTTTCACCTCCAGATCATTCTCTGAGTGTTTACAGTGAACCTACTGG
AGACAAGAGGTGTCATGATGCTGTAGAGATCTAAGACTGAGTGACCTCCATTACCACTGT
CCATAGGGAGTTTCCATGGAGTAGAAGTGATGCATGAGGTGCACCACATGCTCTGTGGAT
GGGATGATCAAAGGTCTGACAGTCATGGGTGGATGGGTGGTTATTTGGTCCAGTGACCCC
TGAAGGCTTTCTGCCTGAGGGAGTGTGGGAGACAGAAGATTGTGTAGGGTGTGTGGTCAG
CAGGACGCTCGTGCCAGAGTCCTAGGATGTCCATGCTGGCATCCTAGGAAAAATGGTGAA
GACCCATCTACAAAAATTAAGTGGCAAGGATGCTCCTTTTGCTTATCATCACACCATTCT
ATGGGAGGGATGATGTAATGAGATAATCTGGGACAAAATTTGGTATTCCTCTGTGTTTCA
GTCAAACAGCACCAGTAATTTATTTTCTCTCTGATGCTGGCAACTTATGTGGCCACTGCA
CCTTTAATTTCCCCTTTGAAAAAAAGGACATCCTGCTTTACCTTCTTTTCTTCTTCTCAC
TTTCCTTTATACTGGGCAAAATCTGTTCATAAAGAAAGTCGGTGCTTTTATCTCTTCAGA
AGACCCCTTTTTTTATACTGTAGGGGGCATTCACCACATCCATTGGAGTGGGTCAGACTG
CTTCCAGTGCTTGATGGATACACATAAAGAATATTAAAGCTGAAAGAGACCTTGAAGATC
ATCAGAGCAATCTTCCTTTTACAGATGAGGACAGAGTCCAGATCAGGATGTCTCCTGATT
TGCCCAAGATCACACGGCCAATCAGTGACAGTCTGGAAAAAAACATCCTTTCTAGTCCTC
ATAAGGCTGGGTGCTCAAAAAAGACAGGACACTGGATTACTGTGGCCACTCATTGCCACT
GCATGGAAGTCAGCCTGCCTATTTGCTTGGTGCATTTTATTACAGCTTGGTACTTCTCTC
TTGAATCCCCCTGAACCGACATGGCTCTGTCTAGGAGAAGCTTATAAAGGCGGCTTTATT
CCTAGATGCCCTGTACATGCAGCATTCAGAAAAGAGCGGCTGAAAATGGGTGTGGGGCAG
GGAGAAAACATTTGTCTTTTAATACTGGCCTGACATGAAAGCCTCACTGGCAGGCACTTT
GAGAACCCAGCTAAATAATGGTTGCAGCCAAGACAAAACATAAAACTGACCCACTAGTTA
TGTGGTTACTTAAACATGATTTACCCTGCATTATGCTGGCTGGGACCTGGGGGTCTCATT
TCTAATGAGTCAAGAGACAGCACAGTTCATTGCATTGGAAGGTATGCTATTGGACTGCAG
ACTGGTCATTGCAAAAGAAAAGGTCCTTAAATATTTCCCACTTTGCCCCTAAACTTGCAG
AAATACATGGAATAGCACAGCTCATGTGTTGGTGGACGCAGGCAAGGATGGGATGGATGG
TAAGTGTGAGTGGTTCCAGTGTGGGATGCGGGCTGGAGATGATTAGCCGGAACCAGAGTC
CTTGCACTGATTGGGAGAAGGAGGCACAGGGATTTGGAAGGGAACTGTTAAGCGATTTAG
CCAAACATGCAACGCTCTGCATCCTCAGTGCCCCGGTGGACACAATCGCCATCTTACGTG
CACATCTGACAGCCAACCCTGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAGATACTGTTGTTTCACCTCCAGATCATTCTCTGAGTGTTTACAGTGAACCTACTGG
AGACAAGAGGTGTCATGATGCTGTAGAGATCTAAGACTGAGTGACCTCCATTACCACTGT
CCATAGGGAGTTTCCATGGAGTAGAAGTGATGCATGAGGTGCACCACATGCTCTGTGGAT
GGGATGATCAAAGGTCTGACAGTCATGGGTGGATGGGTGGTTATTTGGTCCAGTGACCCC
TGAAGGCTTTCTGCCTGAGGGAGTGTGGGAGACAGAAGATTGTGTAGGGTGTGTGGTCAG
CAGGACGCTCGTGCCAGAGTCCTAGGATGTCCATGCTGGCATCCTAGGAAAAATGGTGAA
GACCCATCTACAAAAATTAAGTGGCAAGGATGCTCCTTTTGCTTATCATCACACCATTCT
ATGGGAGGGATGATGTAATGAGATAATCTGGGACAAAATTTGGTATTCCTCTGTGTTTCA
GTCAAACAGCACCAGTAATTTATTTTCTCTCTGATGCTGGCAACTTATGTGGCCACTGCA
CCTTTAATTTCCCCTTTGAAAAAAAGGACATCCTGCTTTACCTTCTTTTCTTCTTCTCAC
TTTCCTTTATACTGGGCAAAATCTGTTCATAAAGAAAGTCGGTGCTTTTATCTCTTCAGA
AGACCCCTTTTTTTATACTGTAGGGGGCATTCACCACATCCATTGGAGTGGGTCAGACTG
CTTCCAGTGCTTGATGGATACACATAAAGAATATTAAAGCTGAAAGAGACCTTGAAGATC
ATCAGAGCAATCTTCCTTTTACAGATGAGGACAGAGTCCAGATCAGGATGTCTCCTGATT
TGCCCAAGATCACACGGCCAATCAGTGACAGTCTGGAAAAAAACATCCTTTCTAGTCCTC
ATAAGGCTGGGTGCTCAAAAAAGACAGGACACTGGATTACTGTGGCCACTCATTGCCACT
GCATGGAAGTCAGCCTGCCTATTTGCTTGGTGCATTTTATTACAGCTTGGTACTTCTCTC
TTGAATCCCCCTGAACCGACATGGCTCTGTCTAGGAGAAGCTTATAAAGGCGGCTTTATT
CCTAGATGCCCTGTACATGCAGCATTCAGAAAAGAGCGGCTGAAAATGGGTGTGGGGCAG
GGAGAAAACATTTGTCTTTTAATACTGGCCTGACATGAAAGCCTCACTGGCAGGCACTTT
GAGAACCCAGCTAAATAATGGTTGCAGCCAAGACAAAACATAAAACTGACCCACTAGTTA
TGTGGTTACTTAAACATGATTTACCCTGCATTATGCTGGCTGGGACCTGGGGGTCTCATT
TCTAATGAGTCAAGAGACAGCACAGTTCATTGCATTGGAAGGTATGCTATTGGACTGCAG
ACTGGTCATTGCAAAAGAAAAGGTCCTTAAATATTTCCCACTTTGCCCCTAAACTTGCAG
AAATACATGGAATAGCACAGCTCATGTGTTGGTGGACGCAGGCAAGGATGGGATGGATGG
TAAGTGTGAGTGGTTCCAGTGTGGGATGCGGGCTGGAGATGATTAGCCGGAACCAGAGTC
CTTGCACTGATTGGGAGAAGGAGGCACAGGGATTTGGAAGGGAACTGTTAAGCGATTTAG
CCAAACATGCAACGCTCTGCATCCTCAGTGCCCCGGTGGACACAATCGCCATCTTACGTG
CACATCTGACAGCCAACCCTGAGC

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               3-885, gnl|bosTau2|chr24 (32765723-32764854)
               

               
               3-885, gnl|Hg17|chr18 (40556465-40557501)
               

               
               3-885, gnl|Mm7|chr18 (79352771-79351786)
               


               
               903-1704, gnl|bosTau2|chr24 (32764854-32764034)
               

               
               903-1704, gnl|Hg17|chr18 (40557501-40558329)
               

               
               903-1704, gnl|Mm7|chr18 (79351786-79351010)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-885, gnl|bosTau2|chr24 (32765723-32764854)
               

               
               3-885, gnl|Hg17|chr18 (40556465-40557501)
               

               
               3-885, gnl|Mm7|chr18 (79352771-79351786)
               


               
               903-1704, gnl|bosTau2|chr24 (32764854-32764034)
               

               
               903-1704, gnl|Hg17|chr18 (40557501-40558329)
               

               
               903-1704, gnl|Mm7|chr18 (79351786-79351010)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               duo (0.172801)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)

	3-885, gnl\|bosTau2\|chr24 (32765723-32764854)
	3-885, gnl\|Hg17\|chr18 (40556465-40557501)
	3-885, gnl\|Mm7\|chr18 (79352771-79351786)

	903-1704, gnl\|bosTau2\|chr24 (32764854-32764034)
	903-1704, gnl\|Hg17\|chr18 (40557501-40558329)
	903-1704, gnl\|Mm7\|chr18 (79351786-79351010)