Ss1.1-Lng1-LNG010019E12.5
|
GGCTACTGCNTATCAGCTAGAGCTGGTATGAATTGAACTTGGCAGTGGAGATGGAGGGTA
GTGGATTAATTCAAAAGCGAGACACCGGCCTTTCCGCCGCCCACTCTCTCACCCCCTCGG
GCGTGTTAAATGCCTTTGAGCCCGACGACGGCCTTGAGCGACTTCGTCATTTCTGCATGA
GGTCACAGCAGTCGCTAGCGCCGAAGGGGAGGCCGCGGGTTAGGAGAGTTCCAAGTGAAG
GAAGCAGGGCCGGGGTGAGGCCAAGAAGAAGTTAGGCTGTGTCCTGCGTGTTCTTGACAC
AGAGGATTTAGTAACAGCCTTCATCTCATCCGAAATGTCTGCCACCCATTGTCACTGCTG
TTCGGAATTTCTCCAGAGACAGTTCCTCACCTGTCTCCTTACAAACGCACATTATGGCAG
CCTCATTAATGCAGATGGCCATGCCGAAGTGTGGACAGATTGGAATGACATGTCCAAGTT
TTTCCAGTATGGGTGGAGATGCACCACTAATGAGGACACCTATTCGAACCGCACCCTGAT
GGGGAACTGGAACCAGGAAAGATATGACCTAAAGAGTATTGTGCAGCCCAAACCCTTGCC
TTCCCAGTTTGGACACTACTTTGATACAACATATGATGCAAGCTACAACAACAAAATGCC
ACTCTCTACCCATAGGTTTAAGCGAGCACCTCACTGGTTCCCAGGACATCAACCTGAGCT
GGTCCCTCCTCCATACAAATGCACAGAAAAGTCAACATATATGAGTAGCTATTCAAAGCC
TCATATTGAGCATCACTCTGTGTATGTGTGGAATCCTAATAACTGCCAATTTCAGGGTCC
ATGATTCTAAGAAAGAATAAGTTTCATTTTTCCAGTGTGGAATGTAGGAAGGAGCACATT
CTAAGGACAGCTAAGGATTTATCTGACTGTAGCACA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCTACTGCNTATCAGCTAGAGCTGGTATGAATTGAACTTGGCAGTGGAGATGGAGGGTA
GTGGATTAATTCAAAAGCGAGACACCGGCCTTTCCGCCGCCCACTCTCTCACCCCCTCGG
GCGTGTTAAATGCCTTTGAGCCCGACGACGGCCTTGAGCGACTTCGTCATTTCTGCATGA
GGTCACAGCAGTCGCTAGCGCCGAAGGGGAGGCCGCGGGTTAGGAGAGTTCCAAGTGAAG
GAAGCAGGGCCGGGGTGAGGCCAAGAAGAAGTTAGGCTGTGTCCTGCGTGTTCTTGACAC
AGAGGATTTAGTAACAGCCTTCATCTCATCCGAAATGTCTGCCACCCATTGTCACTGCTG
TTCGGAATTTCTCCAGAGACAGTTCCTCACCTGTCTCCTTACAAACGCACATTATGGCAG
CCTCATTAATGCAGATGGCCATGCCGAAGTGTGGACAGATTGGAATGACATGTCCAAGTT
TTTCCAGTATGGGTGGAGATGCACCACTAATGAGGACACCTATTCGAACCGCACCCTGAT
GGGGAACTGGAACCAGGAAAGATATGACCTAAAGAGTATTGTGCAGCCCAAACCCTTGCC
TTCCCAGTTTGGACACTACTTTGATACAACATATGATGCAAGCTACAACAACAAAATGCC
ACTCTCTACCCATAGGTTTAAGCGAGCACCTCACTGGTTCCCAGGACATCAACCTGAGCT
GGTCCCTCCTCCATACAAATGCACAGAAAAGTCAACATATATGAGTAGCTATTCAAAGCC
TCATATTGAGCATCACTCTGTGTATGTGTGGAATCCTAATAACTGCCAATTTCAGGGTCC
ATGATTCTAAGAAAGAATAAGTTTCATTTTTCCAGTGTGGAATGTAGGAAGGAGCACATT
CTAAGGACAGCTAAGGATTTATCTGACTGTAGCACA
|
|
gi|61862454|ref|XP_582538.1| |
Protein identifier
|
gi|61862454|ref|XP_582538.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
368-607, gnl|bosTau2|chr15 (8364200-8363962) |
|
368-607, gnl|canFam2|chr5 (24211855-24211577) |
|
368-607, gnl|dasNov1|scaffold_5677 (55138-55422) |
|
368-607, gnl|echTel1|scaffold_214140 (5845-5568) |
|
368-607, gnl|galGal2|chr24 (5885002-5884741) |
|
368-607, gnl|hg17|chr11 (111258261-111258539) |
|
368-607, gnl|Hg17|chr11 (111258294-111258532) |
|
368-607, gnl|loxAfr1|scaffold_49541 (1577-1303) |
|
368-607, gnl|mm7|chr9 (50743550-50743273) |
|
368-607, gnl|Mm7|chr9 (50743516-50743278) |
|
368-607, gnl|monDom2|scaffold_2 (130005607-130005335) |
|
368-607, gnl|oryCun1|scaffold_100729 (389-666) |
|
368-607, gnl|panTro1|chr9 (113266237-113266515) |
|
368-607, gnl|rheMac2|chr14 (110350780-110351058) |
|
368-607, gnl|rn3|chr8 (54141791-54141522) |
| |
|
663-936, gnl|bosTau2|chr15 (8362996-8362722) |
|
663-936, gnl|Hg17|chr11 (111259692-111259968) |
|
663-936, gnl|Mm7|chr9 (50742611-50742336) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
368-607, gnl|bosTau2|chr15 (8364200-8363962) |
|
368-607, gnl|canFam2|chr5 (24211855-24211577) |
|
368-607, gnl|dasNov1|scaffold_5677 (55138-55422) |
|
368-607, gnl|echTel1|scaffold_214140 (5845-5568) |
|
368-607, gnl|galGal2|chr24 (5885002-5884741) |
|
368-607, gnl|hg17|chr11 (111258261-111258539) |
|
368-607, gnl|Hg17|chr11 (111258294-111258532) |
|
368-607, gnl|loxAfr1|scaffold_49541 (1577-1303) |
|
368-607, gnl|mm7|chr9 (50743550-50743273) |
|
368-607, gnl|Mm7|chr9 (50743516-50743278) |
|
368-607, gnl|monDom2|scaffold_2 (130005607-130005335) |
|
368-607, gnl|oryCun1|scaffold_100729 (389-666) |
|
368-607, gnl|panTro1|chr9 (113266237-113266515) |
|
368-607, gnl|rheMac2|chr14 (110350780-110351058) |
|
368-607, gnl|rn3|chr8 (54141791-54141522) |
| |
|
663-936, gnl|bosTau2|chr15 (8362996-8362722) |
|
663-936, gnl|Hg17|chr11 (111259692-111259968) |
|
663-936, gnl|Mm7|chr9 (50742611-50742336) |
|
cga (0.279096) |
|
tes (0.207814) |
|
fbs (0.175346) |
|
tbr (0.154178) |
|
hyp (0.142837) |
|
lyg (0.133103) |
|
ova (0.129132) |
|
tra (0.123092) |
|
clu (0.119646) |
|
med (0.116252) |
|
spc (0.113366) |
|
cty (0.10408) |
|
eje (0.0988338) |
|
cga (0.279096) |
|
tes (0.207814) |
|
fbs (0.175346) |
|
tbr (0.154178) |
|
hyp (0.142837) |
|
lyg (0.133103) |
|
ova (0.129132) |
|
tra (0.123092) |
|
clu (0.119646) |
|
med (0.116252) |
|
spc (0.113366) |
|
cty (0.10408) |
|
eje (0.0988338) |
