Ss1.1-Lng1-LNG010020A04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TACCTTTTCAGGAAGATGGCGGCTGTGTCAGTGTATGAGCGACCCGTTGGAGGTTTCTCT TTTGATAACTGCCGCCGAAATGCTATCTTGGAAGCCGACTTTGCAAAGAAAGGATACAAG CTTCCAACGGCTCGTAAAACTGGGACGACCATCGCCGGGGTGGTCTATAAGGACGGCATA GTTCTTGGAGCAGATACAAGGGCAACTGAAGGGATGGTTGTTGCTGACAAGAACTGCTCA AAAATACACTTCATATCTCCTAACATTTATTGTTGTGGTGCTGGGACAGCTGCGGACACA GACATGACAACCCAACTCATTTCCTCCAACTTGGAGCTCCACTCGCTCTCCACTGGCCGC CTTCCTAGGGTTGTGACAGCCAATCGGATGCTGAAGCAGATGCTTTTCAGGTATCAAGGT TACATTGGTGCAGCCCTAGTTTTGGGGGGAGTAGATGTTACTGGACCTCACCTCTACAGC ATCTATCCTCACGGATCAACTGATAAGTTGCCTTATGTCACCATGGGTTCTGGCTCTTTG GCAGCAATGGCCGTGTTTGAAGATAAATTTAGGCCAGAGATGGAGGAGGAGGAAGCCAAG CAGCTAGTGAGTGAAGCCATAGCCGCCGGCATCTTCAATGACCTGGGGTCTGGAAGTAAC ATTGATCTCTGTGTCATCAGCAAGAGCAAGCTGGATTTTCTCCGCCCGTACTCCGTGCCC AACAAGAAGGGGACCAGGTTTGGCCGGTACAGGTGTGAGAAAGGGACCACTGCAGTCCTC ACCGAAAAGGTCACTGCCCTGGACATTGAGGTCCTGGAAGAAACAGTCCAGACAATGGAC ACGTCCTGAGTGGTGTCAGTGGACGGCTGATGATTGCTCTGGAAGACGGGGGGCAGTGGA GGCCCCCTCCCACAAGACCTTTGGCTGGTGTTTGCTGAATGAACCCAATAAACAAAGAAA ACCAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TACCTTTTCAGGAAGATGGCGGCTGTGTCAGTGTATGAGCGACCCGTTGGAGGTTTCTCT TTTGATAACTGCCGCCGAAATGCTATCTTGGAAGCCGACTTTGCAAAGAAAGGATACAAG CTTCCAACGGCTCGTAAAACTGGGACGACCATCGCCGGGGTGGTCTATAAGGACGGCATA GTTCTTGGAGCAGATACAAGGGCAACTGAAGGGATGGTTGTTGCTGACAAGAACTGCTCA AAAATACACTTCATATCTCCTAACATTTATTGTTGTGGTGCTGGGACAGCTGCGGACACA GACATGACAACCCAACTCATTTCCTCCAACTTGGAGCTCCACTCGCTCTCCACTGGCCGC CTTCCTAGGGTTGTGACAGCCAATCGGATGCTGAAGCAGATGCTTTTCAGGTATCAAGGT TACATTGGTGCAGCCCTAGTTTTGGGGGGAGTAGATGTTACTGGACCTCACCTCTACAGC ATCTATCCTCACGGATCAACTGATAAGTTGCCTTATGTCACCATGGGTTCTGGCTCTTTG GCAGCAATGGCCGTGTTTGAAGATAAATTTAGGCCAGAGATGGAGGAGGAGGAAGCCAAG CAGCTAGTGAGTGAAGCCATAGCCGCCGGCATCTTCAATGACCTGGGGTCTGGAAGTAAC ATTGATCTCTGTGTCATCAGCAAGAGCAAGCTGGATTTTCTCCGCCCGTACTCCGTGCCC AACAAGAAGGGGACCAGGTTTGGCCGGTACAGGTGTGAGAAAGGGACCACTGCAGTCCTC ACCGAAAAGGTCACTGCCCTGGACATTGAGGTCCTGGAAGAAACAGTCCAGACAATGGAC ACGTCCTGAGTGGTGTCAGTGGACGGCTGATGATTGCTCTGGAAGACGGGGGGCAGTGGA GGCCCCCTCCCACAAGACCTTTGGCTGGTGTTTGCTGAATGAACCCAATAAACAAAGAAA ACCAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 246-413, gnl|bosTau2|chr11 (72754188-72754019) | |
| 246-413, gnl|canFam2|chr9 (61874470-61874304) | |
| 246-413, gnl|danRer3|chrUn (21523260-21523441) | |
| 246-413, gnl|dasNov1|scaffold_5853 (6365-6198) | |
| 246-413, gnl|echTel1|scaffold_317938 (72453-72292) | |
| 246-413, gnl|fr1|chrUn (200453009-200453167) | |
| 246-413, gnl|galGal2|chr17 (1039291-1039141) | |
| 246-413, gnl|hg17|chr9 (124254180-124254346) | |
| 246-413, gnl|Hg17|chr9 (124254348-124254182) | |
| 246-413, gnl|loxAfr1|scaffold_1844 (29721-29554) | |
| 246-413, gnl|mm7|chr2 (38647379-38647544) | |
| 246-413, gnl|Mm7|chr2 (38647542-38647381) | |
| 246-413, gnl|monDom2|scaffold_38 (18316758-18316924) | |
| 246-413, gnl|oryCun1|scaffold_176168 (45100-45265) | |
| 246-413, gnl|panTro1|chr11 (108996996-108997162) | |
| 246-413, gnl|rheMac2|chr15 (11341375-11341209) | |
| 246-413, gnl|rn3|chr3 (18342738-18342903) | |
| 246-413, gnl|tetNig1|chrUn_random (47270336-47270487) | |
| 246-413, gnl|xenTro1|scaffold_448 (331024-330873) | |
| 733-966, gnl|bosTau2|chr11 (72699639-72699410) | |
| 733-966, gnl|Hg17|chr9 (124195547-124195310) | |
| 733-966, gnl|Mm7|chr2 (38595604-38595347) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 246-413, gnl|bosTau2|chr11 (72754188-72754019) | |
| 246-413, gnl|canFam2|chr9 (61874470-61874304) | |
| 246-413, gnl|danRer3|chrUn (21523260-21523441) | |
| 246-413, gnl|dasNov1|scaffold_5853 (6365-6198) | |
| 246-413, gnl|echTel1|scaffold_317938 (72453-72292) | |
| 246-413, gnl|fr1|chrUn (200453009-200453167) | |
| 246-413, gnl|galGal2|chr17 (1039291-1039141) | |
| 246-413, gnl|hg17|chr9 (124254180-124254346) | |
| 246-413, gnl|Hg17|chr9 (124254348-124254182) | |
| 246-413, gnl|loxAfr1|scaffold_1844 (29721-29554) | |
| 246-413, gnl|mm7|chr2 (38647379-38647544) | |
| 246-413, gnl|Mm7|chr2 (38647542-38647381) | |
| 246-413, gnl|monDom2|scaffold_38 (18316758-18316924) | |
| 246-413, gnl|oryCun1|scaffold_176168 (45100-45265) | |
| 246-413, gnl|panTro1|chr11 (108996996-108997162) | |
| 246-413, gnl|rheMac2|chr15 (11341375-11341209) | |
| 246-413, gnl|rn3|chr3 (18342738-18342903) | |
| 246-413, gnl|tetNig1|chrUn_random (47270336-47270487) | |
| 246-413, gnl|xenTro1|scaffold_448 (331024-330873) | |
| 733-966, gnl|bosTau2|chr11 (72699639-72699410) | |
| 733-966, gnl|Hg17|chr9 (124195547-124195310) | |
| 733-966, gnl|Mm7|chr2 (38595604-38595347) |
| Expressed library(ies): 39 entry(ies) | More info |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
| nlu (0.575043) | |
| nca (0.547495) | |
| fce (0.543183) | |
| ecc (0.46014) | |
| nms (0.427716) | |
| cov (0.396458) | |
| col (0.390016) | |
| eru (0.360144) | |
| csp (0.322373) | |
| nbm (0.297974) | |
| ssp (0.271039) | |
| ese (0.253004) | |
| cly (0.241284) | |
| mas (0.210305) | |
| jej (0.197844) | |
| nep (0.183925) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cag (0.151194) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| pla (0.133672) | |
| bla (0.124347) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.575043) | |
| nca (0.547495) | |
| fce (0.543183) | |
| ecc (0.46014) | |
| nms (0.427716) | |
| cov (0.396458) | |
| col (0.390016) | |
| eru (0.360144) | |
| csp (0.322373) | |
| nbm (0.297974) | |
| ssp (0.271039) | |
| ese (0.253004) | |
| cly (0.241284) | |
| mas (0.210305) | |
| jej (0.197844) | |
| nep (0.183925) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cag (0.151194) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| pla (0.133672) | |
| bla (0.124347) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| eje (0.0988338) | |
| ldo (0.0970026) |