Non-Coding RNA Search

Ss1.1-Lng1-LNG010020A07.5

Sequence:


               
               AGCACTTGTTCGCTGCTGCCCCAGAAGGCTAGAAGCCGAGGCGCCAGGAGCGGCATGGCG
ACTTGGTCCCAGCCGGACTCGGGTATCCGGGGCAGGGTGGGACCGGGCTCAGACCTGGCC
TTCCTCGATCTTTAAGGGACCTCGTCCATTTGCCCGAACTTAATTGGCTCTTGGGAGGTT
TTAGTAATAAATCGCGTGAGAACTGGAGGGTAGTGTAAGCAGGAATTCTAGATCGTAATT
ATGTTTACTCTAACCAGATAAGGGTGTGTGTGTGTGTGTCTGTGTGTATGTATAGATCCC
TTTTTCTCTTTAGGATTGGGTCACAACAGTGAAGAAGAGAGAGTTATGTGTTGGTTTGTG
AGGTTAATGGAAGCTCCGAAGTAGAGACTAGAAACTGAAAGGCAGCTTTGCTCTCTCTCC
ACTTGGCTATCTGGGTTGAGGACTTGGCCATATCCTTCTGCTTTGGCTCAGAAGGTCACA
TGAATGAAAATAAAACCTGCCTATTCAAATTCTGGGCCAAATAATCCTGCCTCAGCCCCC
ACCCCCCTCCCTTCAGTACCCCCCACCTTTTTTTTTTCCTTTAATGTAAGAATGATAGGA
AAGGGAAGTCAGGTTTCAAAATCGGGAAAACAGAAAAAGCATTTTTTCTGTAATGTGTTG
TCCTCTCATCCTTGTACACTCTCAGCCAGTAATAATAATCTCTCCCTCCCCTTTAGAACT
TGAAGGGAGAGGACTTGTAGGAGGCTTTCTCCTGAGAGATGGCAAGCAAACTTTCTTTTA
AGATAGGAAATGGACTTCTCAACCTAAAAATAGAATCTGGGTAGTGTATACTTGGGGTGG
GGGAGGGTTGATAAATTGGACAACATGTAAAATAGTTAGGATGCCCTGGGCATTATCTGC
TTATCTGAAATGAACTTTAGAGTCCTGCACAGTTAATAGCCAGATACTGAGATCCCTGGT
GAGCAGAATCTTCCTTTCGTAGTTATTCTTGTCTATAACAAATTTTTGGGTTTTTTTGTT
TTTACGAGCGTATAACTGAGTTATTGTTGAGTAAAAAATAAGAGTGGTCTTTTAATATGT
TTTCTGCTTTCTGCCTTGATCGTGGATGAAAAATGATGGACTCTTATCCTGTTGCTTTTG
TGGTTCCCATTTCAGGTTTCTCTGGAAACCCCCCTGGTAAGTGTGGAGGAGGCGGGACAC
TCTGACCCAAGACAAAAGGCCTGTAGCTCCAGCCAAAGAAAATAAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCACTTGTTCGCTGCTGCCCCAGAAGGCTAGAAGCCGAGGCGCCAGGAGCGGCATGGCG
ACTTGGTCCCAGCCGGACTCGGGTATCCGGGGCAGGGTGGGACCGGGCTCAGACCTGGCC
TTCCTCGATCTTTAAGGGACCTCGTCCATTTGCCCGAACTTAATTGGCTCTTGGGAGGTT
TTAGTAATAAATCGCGTGAGAACTGGAGGGTAGTGTAAGCAGGAATTCTAGATCGTAATT
ATGTTTACTCTAACCAGATAAGGGTGTGTGTGTGTGTGTCTGTGTGTATGTATAGATCCC
TTTTTCTCTTTAGGATTGGGTCACAACAGTGAAGAAGAGAGAGTTATGTGTTGGTTTGTG
AGGTTAATGGAAGCTCCGAAGTAGAGACTAGAAACTGAAAGGCAGCTTTGCTCTCTCTCC
ACTTGGCTATCTGGGTTGAGGACTTGGCCATATCCTTCTGCTTTGGCTCAGAAGGTCACA
TGAATGAAAATAAAACCTGCCTATTCAAATTCTGGGCCAAATAATCCTGCCTCAGCCCCC
ACCCCCCTCCCTTCAGTACCCCCCACCTTTTTTTTTTCCTTTAATGTAAGAATGATAGGA
AAGGGAAGTCAGGTTTCAAAATCGGGAAAACAGAAAAAGCATTTTTTCTGTAATGTGTTG
TCCTCTCATCCTTGTACACTCTCAGCCAGTAATAATAATCTCTCCCTCCCCTTTAGAACT
TGAAGGGAGAGGACTTGTAGGAGGCTTTCTCCTGAGAGATGGCAAGCAAACTTTCTTTTA
AGATAGGAAATGGACTTCTCAACCTAAAAATAGAATCTGGGTAGTGTATACTTGGGGTGG
GGGAGGGTTGATAAATTGGACAACATGTAAAATAGTTAGGATGCCCTGGGCATTATCTGC
TTATCTGAAATGAACTTTAGAGTCCTGCACAGTTAATAGCCAGATACTGAGATCCCTGGT
GAGCAGAATCTTCCTTTCGTAGTTATTCTTGTCTATAACAAATTTTTGGGTTTTTTTGTT
TTTACGAGCGTATAACTGAGTTATTGTTGAGTAAAAAATAAGAGTGGTCTTTTAATATGT
TTTCTGCTTTCTGCCTTGATCGTGGATGAAAAATGATGGACTCTTATCCTGTTGCTTTTG
TGGTTCCCATTTCAGGTTTCTCTGGAAACCCCCCTGGTAAGTGTGGAGGAGGCGGGACAC
TCTGACCCAAGACAAAAGGCCTGTAGCTCCAGCCAAAGAAAATAAACC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               439-555, - strand, RNAz p=0.549606

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               439-555, - strand, RNAz p=0.549606

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1248, gnl|bosTau2|chr19 (31102483-31101285)
               

               
               1-1248, gnl|Hg17|chr17 (43481142-43483060)
               

               
               1-1248, gnl|Mm7|chr11 (96938532-96937171)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1248, gnl|bosTau2|chr19 (31102483-31101285)
               

               
               1-1248, gnl|Hg17|chr17 (43481142-43483060)
               

               
               1-1248, gnl|Mm7|chr11 (96938532-96937171)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ssp (0.13552)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)
               

               
               jca (0.11396)

	1-1248, gnl\|bosTau2\|chr19 (31102483-31101285)
	1-1248, gnl\|Hg17\|chr17 (43481142-43483060)
	1-1248, gnl\|Mm7\|chr11 (96938532-96937171)