Non-Coding RNA Search

Ss1.1-Lng1-LNG010020D12.5.5

Sequence:


               
               AGCTGAGGACTCGCGCTGTTAGCGGTCGCTTCCTGGATTATTTTTTGCTGAGGTATTTGC
AATCTTTTTCGTTTTTTGTGGAGAGGATTTCGCTGCGATCTGAAGGTCTAGACGAACGCT
CGGGCTCCGTGGGAAGGCTTTGGGCTCTCCGGCCTCGGATTTTTCATTTTCATCCTTGGA
ACTGTCGTGTGGCTGTTTTCCACTGTGGATTATAACTGCAACATGACACTGGAAGAGCTC
GTGGCATGCGACAACGCGGCGCAAAAGATGCAGACGGTGAGCGCCGCGGTGGAGGAGCTG
CTGGTGGCCGCGCAGCGCCAGGACCGCCTCACCGTGGGGGTGTACGAGTCGGCCAAGCTG
ATGAATGTGGACCCTGACAGCGTTGTCCTGTGCCTCCTGGCCATTGACGAGGAGGAAGAG
GATGACATCGCCCTGCAGATCCACTTCACCCTCATCCAGTCGTTTTGCTGTGACAACGAT
ATCGATATCGTGCGGGTGTCAGGAATGCAGCGACTGGCACAGCTGCTGGGCGAGCCGGCC
GAGACCCAGGGCACCACTGAGGCCCGGGACCTGCACTGCCTCCTGGTCACGAACCCTCAC
ACAGATGCCTGGAAAAGCCACGGCCTGGTGGAGGTAGCCAGTTACTGCGAAGAGAGCCGG
GGGAACAACCAGTGGGTCCCCTGCATCTCCCTCCAGGAACGCTGAGACCCTTCTGGTCAG
AACCTGTTGCTGCCAAAAAATAAAACAAAATAAATATTTGACACCCCTCCCCCCAGAACA
ACCCCCCAAAACAACCCAACCCATGAGACCATCGGGGGCAGGATCACTGGAGACTGAAGA
CAGGAGAGGGGAGTGCGCAGCGGTGCCCAGCCTGGAGCAGCACGCCAGAAGTGGCCACCG
TGTGAGGAGAAGATGGGACCCAGGCCAGCAGGAGAGGGGACCCCGGAGCTCGGGCCTGGT
GACAGAGCAGAAGCTGCGGTGGGGGAGCTGCTGCCTCCCTCACAGTGGAGGGCCTGGACT
CCACATTCCGGGAGTGGGGTGAGACTGCACCCCCATCCTTCTTGAGACGGGAGCTGTCAT
CTGCAGATGGGCCTTGCTTGGCAGAGGGTCTGCACCCTGGCCAGGACTTAGACTTTGGGA
CTTGGGAGCAGGGGCTGAATTTGCTCTGTACCCAGGAACTCCCAGTTTGCAAACTAAATA
GACAATCTATTTTGTTACTTGCACTTGCTACTTGAACCACTGAAAGAGAGATGGGAGGCT
TACAGATACATATATTTTTACTTCTACTATGACGGCCTTGTAATAAATTTCTAAAGCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGAGGACTCGCGCTGTTAGCGGTCGCTTCCTGGATTATTTTTTGCTGAGGTATTTGC
AATCTTTTTCGTTTTTTGTGGAGAGGATTTCGCTGCGATCTGAAGGTCTAGACGAACGCT
CGGGCTCCGTGGGAAGGCTTTGGGCTCTCCGGCCTCGGATTTTTCATTTTCATCCTTGGA
ACTGTCGTGTGGCTGTTTTCCACTGTGGATTATAACTGCAACATGACACTGGAAGAGCTC
GTGGCATGCGACAACGCGGCGCAAAAGATGCAGACGGTGAGCGCCGCGGTGGAGGAGCTG
CTGGTGGCCGCGCAGCGCCAGGACCGCCTCACCGTGGGGGTGTACGAGTCGGCCAAGCTG
ATGAATGTGGACCCTGACAGCGTTGTCCTGTGCCTCCTGGCCATTGACGAGGAGGAAGAG
GATGACATCGCCCTGCAGATCCACTTCACCCTCATCCAGTCGTTTTGCTGTGACAACGAT
ATCGATATCGTGCGGGTGTCAGGAATGCAGCGACTGGCACAGCTGCTGGGCGAGCCGGCC
GAGACCCAGGGCACCACTGAGGCCCGGGACCTGCACTGCCTCCTGGTCACGAACCCTCAC
ACAGATGCCTGGAAAAGCCACGGCCTGGTGGAGGTAGCCAGTTACTGCGAAGAGAGCCGG
GGGAACAACCAGTGGGTCCCCTGCATCTCCCTCCAGGAACGCTGAGACCCTTCTGGTCAG
AACCTGTTGCTGCCAAAAAATAAAACAAAATAAATATTTGACACCCCTCCCCCCAGAACA
ACCCCCCAAAACAACCCAACCCATGAGACCATCGGGGGCAGGATCACTGGAGACTGAAGA
CAGGAGAGGGGAGTGCGCAGCGGTGCCCAGCCTGGAGCAGCACGCCAGAAGTGGCCACCG
TGTGAGGAGAAGATGGGACCCAGGCCAGCAGGAGAGGGGACCCCGGAGCTCGGGCCTGGT
GACAGAGCAGAAGCTGCGGTGGGGGAGCTGCTGCCTCCCTCACAGTGGAGGGCCTGGACT
CCACATTCCGGGAGTGGGGTGAGACTGCACCCCCATCCTTCTTGAGACGGGAGCTGTCAT
CTGCAGATGGGCCTTGCTTGGCAGAGGGTCTGCACCCTGGCCAGGACTTAGACTTTGGGA
CTTGGGAGCAGGGGCTGAATTTGCTCTGTACCCAGGAACTCCCAGTTTGCAAACTAAATA
GACAATCTATTTTGTTACTTGCACTTGCTACTTGAACCACTGAAAGAGAGATGGGAGGCT
TACAGATACATATATTTTTACTTCTACTATGACGGCCTTGTAATAAATTTCTAAAGCTTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               GA45B_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               GA45B_HUMAN

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               2-267, gnl|bosTau2|chr7 (17900908-17900643)
               

               
               2-267, gnl|Hg17|chr19 (2427136-2427401)
               

               
               2-267, gnl|Mm7|chr10 (80719693-80719966)
               


               
               369-591, gnl|bosTau2|chr7 (17900026-17899804)
               

               
               369-591, gnl|Hg17|chr19 (2428027-2428249)
               

               
               369-591, gnl|Mm7|chr10 (80720635-80720857)
               


               
               644-1320, gnl|bosTau2|chr7 (17899540-17898839)
               

               
               644-1320, gnl|Hg17|chr19 (2428590-2429255)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-267, gnl|bosTau2|chr7 (17900908-17900643)
               

               
               2-267, gnl|Hg17|chr19 (2427136-2427401)
               

               
               2-267, gnl|Mm7|chr10 (80719693-80719966)
               


               
               369-591, gnl|bosTau2|chr7 (17900026-17899804)
               

               
               369-591, gnl|Hg17|chr19 (2428027-2428249)
               

               
               369-591, gnl|Mm7|chr10 (80720635-80720857)
               


               
               644-1320, gnl|bosTau2|chr7 (17899540-17898839)
               

               
               644-1320, gnl|Hg17|chr19 (2428590-2429255)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cbl (0.573987)
               

               
               nlu (0.383362)
               

               
               cov (0.264306)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.573987)
               

               
               nlu (0.383362)
               

               
               cov (0.264306)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

	2-267, gnl\|bosTau2\|chr7 (17900908-17900643)
	2-267, gnl\|Hg17\|chr19 (2427136-2427401)
	2-267, gnl\|Mm7\|chr10 (80719693-80719966)

	369-591, gnl\|bosTau2\|chr7 (17900026-17899804)
	369-591, gnl\|Hg17\|chr19 (2428027-2428249)
	369-591, gnl\|Mm7\|chr10 (80720635-80720857)

	644-1320, gnl\|bosTau2\|chr7 (17899540-17898839)
	644-1320, gnl\|Hg17\|chr19 (2428590-2429255)

	cbl (0.573987)
	nlu (0.383362)
	cov (0.264306)
	nms (0.213858)
	col (0.195008)
	pla (0.133672)
	sug (0.127291)
	cly (0.120642)
	cty (0.10408)