Non-Coding RNA Search

Ss1.1-Lng1-LNG010020E08.5

Sequence:


               
               AGAAATTTCCAGGGCAGCTTCCCTGCAGCCTCTTCCTTCGGATTTCGGACAGCAGCAGCA
TGACGATGATCCTCGGTTACTGGGACATCCGCGGACTGGCCCACGCCATCCGCCTGCTCC
TGGAGTACACAGACTCCAGCTACGAGGAGAAGAAGTACACGTTGGGGGACGCTCCCGACT
ATGACAGAAGCCAGTGGCTGAGTGACAAATTCAAGCTGGGCCTGGACTTCCCCAATCTGC
CCTACTTAATTGACGGGGCTCACAAGCTGACCCAGAGCAACGCCATCCTGCGCTACATTG
CTCGCAAGCACAACATGTGTGGGGAGACAGAGGAAGAGAAGATTCGAATGGACATTTTGG
AGAACCAGGTTATTGATGCCCATTTGCAGATGGCCAGGATCTGCTACAGCCCTGACTTTG
AGAAACTGAAGCCTGGGTACTTGAAGGAGATCCCTGAAATCCTGAAGTGCTTCTCTGAGT
TTCTGGGGAAGAGGCCTTGGTTTGCAGGGGACAAGCTCACCTATGTGGATTTCCTGGCTT
ACGATGTCCTTGACCTGTACCGCATATTCGATCCCAAGTGCCTGGATGGATTCCCAAACC
TGAAAGACTTCCTCAGCCGCTTTGAGGGCCTGAAGAAGATCGCTGCCTACATGAGGTCCA
GTCGCTTCCTCCCAGGTCCTTTGTTTCTGAAGGTGGCCATGTGGGGCAACAAGTAGTGTC
CTGCAGCCAGGAGATGGACGGAGGACGGGGGCTCTGGAGAACAGGTGGCCTCCCTGCAGC
CCAGGCCCCGTTCTTTGCCCTTCTAGTCATTCTAGATGCCCTATTGGCCCCCTTTTCTCC
CTCCCAGCCCCCTTTCCATCCATCCTTTAAACTTCAGCTCCCCACGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAATTTCCAGGGCAGCTTCCCTGCAGCCTCTTCCTTCGGATTTCGGACAGCAGCAGCA
TGACGATGATCCTCGGTTACTGGGACATCCGCGGACTGGCCCACGCCATCCGCCTGCTCC
TGGAGTACACAGACTCCAGCTACGAGGAGAAGAAGTACACGTTGGGGGACGCTCCCGACT
ATGACAGAAGCCAGTGGCTGAGTGACAAATTCAAGCTGGGCCTGGACTTCCCCAATCTGC
CCTACTTAATTGACGGGGCTCACAAGCTGACCCAGAGCAACGCCATCCTGCGCTACATTG
CTCGCAAGCACAACATGTGTGGGGAGACAGAGGAAGAGAAGATTCGAATGGACATTTTGG
AGAACCAGGTTATTGATGCCCATTTGCAGATGGCCAGGATCTGCTACAGCCCTGACTTTG
AGAAACTGAAGCCTGGGTACTTGAAGGAGATCCCTGAAATCCTGAAGTGCTTCTCTGAGT
TTCTGGGGAAGAGGCCTTGGTTTGCAGGGGACAAGCTCACCTATGTGGATTTCCTGGCTT
ACGATGTCCTTGACCTGTACCGCATATTCGATCCCAAGTGCCTGGATGGATTCCCAAACC
TGAAAGACTTCCTCAGCCGCTTTGAGGGCCTGAAGAAGATCGCTGCCTACATGAGGTCCA
GTCGCTTCCTCCCAGGTCCTTTGTTTCTGAAGGTGGCCATGTGGGGCAACAAGTAGTGTC
CTGCAGCCAGGAGATGGACGGAGGACGGGGGCTCTGGAGAACAGGTGGCCTCCCTGCAGC
CCAGGCCCCGTTCTTTGCCCTTCTAGTCATTCTAGATGCCCTATTGGCCCCCTTTTCTCC
CTCCCAGCCCCCTTTCCATCCATCCTTTAAACTTCAGCTCCCCACGTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|7582395|gb|AAF64308.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|7582395|gb|AAF64308.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               53-882, gnl|bosTau2|chr29 (27087397-27088210)
               

               
               53-882, gnl|Hg17|chr6 (111475424-111474557)
               

               
               53-882, gnl|Mm7|chr5 (115863167-115862342)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-882, gnl|bosTau2|chr29 (27087397-27088210)
               

               
               53-882, gnl|Hg17|chr6 (111475424-111474557)
               

               
               53-882, gnl|Mm7|chr5 (115863167-115862342)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nmm (0.265604)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.265604)
               

               
               jca (0.11396)

	53-882, gnl\|bosTau2\|chr29 (27087397-27088210)
	53-882, gnl\|Hg17\|chr6 (111475424-111474557)
	53-882, gnl\|Mm7\|chr5 (115863167-115862342)