Non-Coding RNA Search

Ss1.1-Lng1-LNG010020F03.5

Sequence:


               
               ACTTCGGCGGCGCAGCAATGGCGAGACCGTAAGTGCCGCTGACGGGAGACGGGAGAGCGG
CGAGGCTTGAGTTAGAGGCTGATGCGGGCCGGTGTGGACGCGCCAGGAGAACTAGCTGCT
GTCAGAGGCACCCTGGTGCAGAGCCAGTCGCTTTACGTTTTGAGGCCTCAGCTTCCTAGT
GGCGCAGCAATGGCGAGACCATGCCGCGTCACTGCTCCGCCGCCGGCTGCTGCACGCGGG
ACACGCGAGAGACGCGCAACCGCGGCATCTCCTTCCACAGGCTTCCCAAGAAGGACAACC
CGAGGCGAGGCTTGTGGCTGGCCAACTGCCAGCGGCTGGACCCCAGCGGCCAGGGCTTGT
GGGACCCAGCATCCGAGTACATCTACTTCTGCTCCAAACACTTCGAGGAGAACTGCTTTG
AACTGGTGGGAATCAGTGGGTACCACAGGCTGAAGGAGGGAGCAGTCCCCACAATATTTG
AGTCTTTCTCCAAGTTGCGCCGAACAGCCAAGACCAAGGGGCACAGTTACCCACCCGGCC
CCCCTGATGTCAGCCGGCTTCGGCGATGCAGGAAGCGCTGCTCTGAGGGCCGAGGGCCCA
CGACTCCGTTTTCTCCACCTCCACCTGCTGATGTCACCTGCTTTCCTGTGGAAGAGGCCT
CCGCACCTGCTGCTCTGTCTGCTTCCCCTACTGGGAGGCTGGAGCCTGGCCTCAGCAGCC
CGTTCTCAGACCTCCTGGGGCCCCTGGGTGCCCAGGCTGATGAAGCAGGCTGCAGCACCC
AGCCCTCCCCCGAGCGGGAGCCCGAGCGGCAGCCGTCCCCTCTGGAGCCTCGGCCTGTGT
CACCCTCAGCCTACATGTTGCGCCTCCCTCCTCCTGCTGGAGCCTACATCCAGAATGAGC
ACAGCTACCAGGTGGGCAGTGCCCTGCTCTGGAAGCGGCGGGCTGAGGCTGCCCTTGATG
CCCTGGACAAGGCCCAGCGCCAACTGCAGGCCTGCAAGCGGCGGGAGCAACGGCTGAGGC
TACGGCTGACCAAGCTGCAGCAGGAGCGGGCACGGGAGAAGCGGGCACAGGCAGATGCCC
GCCAGACTCTGAAGGAGCATGTGCACGACTTTGCCATGCAGCTAAGCAGCAGCATGGCCT
GAGTGAGGAGCTGCCCATCAGGGTTCCTGCCTCTTCCTCCTTCAGGATCTGCCTAGAGAG
GGACCTGACTTGAGCTGTGTCTGACCTGCCAGATGCCATAATAAAGCGGTTTCTAGGAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTCGGCGGCGCAGCAATGGCGAGACCGTAAGTGCCGCTGACGGGAGACGGGAGAGCGG
CGAGGCTTGAGTTAGAGGCTGATGCGGGCCGGTGTGGACGCGCCAGGAGAACTAGCTGCT
GTCAGAGGCACCCTGGTGCAGAGCCAGTCGCTTTACGTTTTGAGGCCTCAGCTTCCTAGT
GGCGCAGCAATGGCGAGACCATGCCGCGTCACTGCTCCGCCGCCGGCTGCTGCACGCGGG
ACACGCGAGAGACGCGCAACCGCGGCATCTCCTTCCACAGGCTTCCCAAGAAGGACAACC
CGAGGCGAGGCTTGTGGCTGGCCAACTGCCAGCGGCTGGACCCCAGCGGCCAGGGCTTGT
GGGACCCAGCATCCGAGTACATCTACTTCTGCTCCAAACACTTCGAGGAGAACTGCTTTG
AACTGGTGGGAATCAGTGGGTACCACAGGCTGAAGGAGGGAGCAGTCCCCACAATATTTG
AGTCTTTCTCCAAGTTGCGCCGAACAGCCAAGACCAAGGGGCACAGTTACCCACCCGGCC
CCCCTGATGTCAGCCGGCTTCGGCGATGCAGGAAGCGCTGCTCTGAGGGCCGAGGGCCCA
CGACTCCGTTTTCTCCACCTCCACCTGCTGATGTCACCTGCTTTCCTGTGGAAGAGGCCT
CCGCACCTGCTGCTCTGTCTGCTTCCCCTACTGGGAGGCTGGAGCCTGGCCTCAGCAGCC
CGTTCTCAGACCTCCTGGGGCCCCTGGGTGCCCAGGCTGATGAAGCAGGCTGCAGCACCC
AGCCCTCCCCCGAGCGGGAGCCCGAGCGGCAGCCGTCCCCTCTGGAGCCTCGGCCTGTGT
CACCCTCAGCCTACATGTTGCGCCTCCCTCCTCCTGCTGGAGCCTACATCCAGAATGAGC
ACAGCTACCAGGTGGGCAGTGCCCTGCTCTGGAAGCGGCGGGCTGAGGCTGCCCTTGATG
CCCTGGACAAGGCCCAGCGCCAACTGCAGGCCTGCAAGCGGCGGGAGCAACGGCTGAGGC
TACGGCTGACCAAGCTGCAGCAGGAGCGGGCACGGGAGAAGCGGGCACAGGCAGATGCCC
GCCAGACTCTGAAGGAGCATGTGCACGACTTTGCCATGCAGCTAAGCAGCAGCATGGCCT
GAGTGAGGAGCTGCCCATCAGGGTTCCTGCCTCTTCCTCCTTCAGGATCTGCCTAGAGAG
GGACCTGACTTGAGCTGTGTCTGACCTGCCAGATGCCATAATAAAGCGGTTTCTAGGAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               THAP7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               THAP7_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               650-808, - strand, RNAz p=0.996892
               

               
               1026-1143, + strand, RNAz p=0.990957

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               650-808, - strand, RNAz p=0.996892
               

               
               1026-1143, + strand, RNAz p=0.990957

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               253-411, gnl|bosTau2|chr17 (45725798-45725955)
               

               
               253-411, gnl|canFam2|chr26 (33565033-33564902)
               

               
               253-411, gnl|dasNov1|scaffold_86258 (3802-3933)
               

               
               253-411, gnl|echTel1|scaffold_115245 (104-235)
               

               
               253-411, gnl|hg17|chr22 (19680126-19680257)
               

               
               253-411, gnl|Hg17|chr22 (19680281-19680125)
               

               
               253-411, gnl|loxAfr1|scaffold_29921 (9317-9448)
               

               
               253-411, gnl|mm7|chr16 (17079990-17080121)
               

               
               253-411, gnl|Mm7|chr6 (125303856-125303727)
               

               
               253-411, gnl|monDom2|scaffold_214 (44763-44632)
               

               
               253-411, gnl|oryCun1|scaffold_190802 (6018-6149)
               

               
               253-411, gnl|panTro1|chr23 (19643941-19644072)
               

               
               253-411, gnl|rheMac2|chr10 (64900799-64900668)
               

               
               253-411, gnl|rn3|chr11 (85515876-85515745)
               

               
               253-411, gnl|xenTro1|scaffold_50 (937068-937199)
               


               
               650-1143, gnl|bosTau2|chr17 (45159506-45159987)
               

               
               650-1143, gnl|Hg17|chr22 (19679203-19678722)
               

               
               650-1143, gnl|Mm7|chr16 (17078401-17077920)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               253-411, gnl|bosTau2|chr17 (45725798-45725955)
               

               
               253-411, gnl|canFam2|chr26 (33565033-33564902)
               

               
               253-411, gnl|dasNov1|scaffold_86258 (3802-3933)
               

               
               253-411, gnl|echTel1|scaffold_115245 (104-235)
               

               
               253-411, gnl|hg17|chr22 (19680126-19680257)
               

               
               253-411, gnl|Hg17|chr22 (19680281-19680125)
               

               
               253-411, gnl|loxAfr1|scaffold_29921 (9317-9448)
               

               
               253-411, gnl|mm7|chr16 (17079990-17080121)
               

               
               253-411, gnl|Mm7|chr6 (125303856-125303727)
               

               
               253-411, gnl|monDom2|scaffold_214 (44763-44632)
               

               
               253-411, gnl|oryCun1|scaffold_190802 (6018-6149)
               

               
               253-411, gnl|panTro1|chr23 (19643941-19644072)
               

               
               253-411, gnl|rheMac2|chr10 (64900799-64900668)
               

               
               253-411, gnl|rn3|chr11 (85515876-85515745)
               

               
               253-411, gnl|xenTro1|scaffold_50 (937068-937199)
               


               
               650-1143, gnl|bosTau2|chr17 (45159506-45159987)
               

               
               650-1143, gnl|Hg17|chr22 (19679203-19678722)
               

               
               650-1143, gnl|Mm7|chr16 (17078401-17077920)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cag (0.453583)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.453583)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	650-808, - strand, RNAz p=0.996892
	1026-1143, + strand, RNAz p=0.990957

	253-411, gnl\|bosTau2\|chr17 (45725798-45725955)
	253-411, gnl\|canFam2\|chr26 (33565033-33564902)
	253-411, gnl\|dasNov1\|scaffold_86258 (3802-3933)
	253-411, gnl\|echTel1\|scaffold_115245 (104-235)
	253-411, gnl\|hg17\|chr22 (19680126-19680257)
	253-411, gnl\|Hg17\|chr22 (19680281-19680125)
	253-411, gnl\|loxAfr1\|scaffold_29921 (9317-9448)
	253-411, gnl\|mm7\|chr16 (17079990-17080121)
	253-411, gnl\|Mm7\|chr6 (125303856-125303727)
	253-411, gnl\|monDom2\|scaffold_214 (44763-44632)
	253-411, gnl\|oryCun1\|scaffold_190802 (6018-6149)
	253-411, gnl\|panTro1\|chr23 (19643941-19644072)
	253-411, gnl\|rheMac2\|chr10 (64900799-64900668)
	253-411, gnl\|rn3\|chr11 (85515876-85515745)
	253-411, gnl\|xenTro1\|scaffold_50 (937068-937199)

	650-1143, gnl\|bosTau2\|chr17 (45159506-45159987)
	650-1143, gnl\|Hg17\|chr22 (19679203-19678722)
	650-1143, gnl\|Mm7\|chr16 (17078401-17077920)

	cag (0.453583)
	cov (0.264306)
	eep (0.245128)
	mas (0.210305)
	fcc (0.197785)
	mcp (0.170648)
	cut (0.169924)
	nje (0.16592)
	hyp (0.142837)
	hlv (0.139256)
	clu (0.119646)
	med (0.116252)
	jca (0.11396)
	ldo (0.0970026)