Ss1.1-Lng1-LNG010020G06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACTTTATTAACACTTCCCGCTAGGCAGAGAATGGGTGAGCAGGCGGTAGAGGGGGCTTG TTTGGCTCGTGGCCCTCTGTGAACTGAGTCTGATCAGCGGAGAATCGCCGTAGTCTGACC ACAGGGTGTCAAGACAAGAATAAAGGCGACGGCAACTCAGGCGACTGGTGGAGACGTTCG ACGAGAAAGCAAGGCCTTTATGCCGGGAGTCGGCGTGGGGTTGGACGGTTTGGGGAGCGG AGCCGGAGATCGGAAACTACAGCTCCCAGTAGGCGTAGCGGCGAAGTCCCGGATGTGGTG GCCGTGAAGCCTGATGGGACCGGTAGTTTTGCCAACGATTTAACCTAGCGGTTTGAGATT GGACCTCCTGAGGCCTGAGGCGCTCGGAGCCGGAGAGAGATGGAGCTGGAGCAGAGAGAG GGGACCATGGCAGCCGTGGGCTTTGAAGAGTTCTCGGCGCCGCCAGGCTCAGAGTTGGCG CTGCCTCCGCTGTTCGGTGGTCACATCCTGGAGAGCGAGCTTGAAACAGAAGTGGAGTTT GTGTCTGGGGGTCTGGGCGGCTCCGGGCTCCGGGAGCGAGATGAAGAGGAAGAGGCAGCG CGGGGCCGCCGGCGCCGCCAGCGGGAACTAAATCGCAGGAAGTATCAGGCACTAGGTCGG CGCTGCCGGGAGATCGAGCAGGTGAACGAGCGGGTCCTGAACAGGCTCCATCAGGTACAG AGGATAACTCGGCGACTCCAGCAGGAGCGGAGGTTCCTCATGAGAGTGCTGGACTCCTAC GGTGACGACTACCGCGCCAGCCAGTTCACCATCGTGCTGGAGGACGAGGGCAGCCAGGGC ACGGACGCCCCCACCCCGGGCAATGCCGAGAACGAGCCCCCAGAGAAAGAGGGGCTGTCC CCGCCTAGAAGGACACCTGCTCCTCCAGAACCCGGCAGCCCGGCCCCCTGCGAGGGACCC AGTGGACGGAAGAGGCGGCGAGTGCCCCGGGACGGACGCCGAGTGGGAGCTGCGCTGACC CCAGAACTGGCCCCGGTGCAGATTAAGGTGGAGGAAGACTTTGGCTTTGAAGCAGACGAG GCCCTAGACTCAAGCTGGGTTTCTCGGGGGCCAGACAAACTGCTGCCCTACCCCACCCTG GCCAGCCCGCCCTTTGACTGACCCTGCCCCCCAATAAAATGACCCCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACTTTATTAACACTTCCCGCTAGGCAGAGAATGGGTGAGCAGGCGGTAGAGGGGGCTTG TTTGGCTCGTGGCCCTCTGTGAACTGAGTCTGATCAGCGGAGAATCGCCGTAGTCTGACC ACAGGGTGTCAAGACAAGAATAAAGGCGACGGCAACTCAGGCGACTGGTGGAGACGTTCG ACGAGAAAGCAAGGCCTTTATGCCGGGAGTCGGCGTGGGGTTGGACGGTTTGGGGAGCGG AGCCGGAGATCGGAAACTACAGCTCCCAGTAGGCGTAGCGGCGAAGTCCCGGATGTGGTG GCCGTGAAGCCTGATGGGACCGGTAGTTTTGCCAACGATTTAACCTAGCGGTTTGAGATT GGACCTCCTGAGGCCTGAGGCGCTCGGAGCCGGAGAGAGATGGAGCTGGAGCAGAGAGAG GGGACCATGGCAGCCGTGGGCTTTGAAGAGTTCTCGGCGCCGCCAGGCTCAGAGTTGGCG CTGCCTCCGCTGTTCGGTGGTCACATCCTGGAGAGCGAGCTTGAAACAGAAGTGGAGTTT GTGTCTGGGGGTCTGGGCGGCTCCGGGCTCCGGGAGCGAGATGAAGAGGAAGAGGCAGCG CGGGGCCGCCGGCGCCGCCAGCGGGAACTAAATCGCAGGAAGTATCAGGCACTAGGTCGG CGCTGCCGGGAGATCGAGCAGGTGAACGAGCGGGTCCTGAACAGGCTCCATCAGGTACAG AGGATAACTCGGCGACTCCAGCAGGAGCGGAGGTTCCTCATGAGAGTGCTGGACTCCTAC GGTGACGACTACCGCGCCAGCCAGTTCACCATCGTGCTGGAGGACGAGGGCAGCCAGGGC ACGGACGCCCCCACCCCGGGCAATGCCGAGAACGAGCCCCCAGAGAAAGAGGGGCTGTCC CCGCCTAGAAGGACACCTGCTCCTCCAGAACCCGGCAGCCCGGCCCCCTGCGAGGGACCC AGTGGACGGAAGAGGCGGCGAGTGCCCCGGGACGGACGCCGAGTGGGAGCTGCGCTGACC CCAGAACTGGCCCCGGTGCAGATTAAGGTGGAGGAAGACTTTGGCTTTGAAGCAGACGAG GCCCTAGACTCAAGCTGGGTTTCTCGGGGGCCAGACAAACTGCTGCCCTACCCCACCCTG GCCAGCCCGCCCTTTGACTGACCCTGCCCCCCAATAAAATGACCCCCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 422-683, gnl|bosTau2|chr18 (56070724-56070463) | |
| 422-683, gnl|canFam2|chr1 (106167680-106167465) | |
| 422-683, gnl|danRer3|chr16 (741495-741698) | |
| 422-683, gnl|dasNov1|scaffold_66014 (42892-42677) | |
| 422-683, gnl|echTel1|scaffold_273438 (14129-13914) | |
| 422-683, gnl|hg17|chr19 (59309633-59309848) | |
| 422-683, gnl|Hg17|chr19 (59309893-59309632) | |
| 422-683, gnl|mm7|chr7 (3251786-3252001) | |
| 422-683, gnl|Mm7|chr7 (3252046-3251785) | |
| 422-683, gnl|monDom2|scaffold_191 (1329109-1328894) | |
| 422-683, gnl|oryCun1|scaffold_103119 (5158-4943) | |
| 422-683, gnl|panTro1|chr20 (56751495-56751710) | |
| 422-683, gnl|rheMac2|chr19 (60204003-60204218) | |
| 422-683, gnl|rn3|chr1 (63978366-63978151) | |
| 422-683, gnl|xenTro1|scaffold_374 (121638-121838) | |
| 821-1038, gnl|bosTau2|chr18 (56064251-56064034) | |
| 821-1038, gnl|canFam2|chr1 (106173881-106173696) | |
| 821-1038, gnl|dasNov1|scaffold_265394 (1646-1478) | |
| 821-1038, gnl|echTel1|scaffold_193138 (2465-2647) | |
| 821-1038, gnl|hg17|chr19 (59303149-59303334) | |
| 821-1038, gnl|Hg17|chr19 (59303365-59303142) | |
| 821-1038, gnl|loxAfr1|scaffold_45998 (11873-12045) | |
| 821-1038, gnl|mm7|chr7 (3243740-3243913) | |
| 821-1038, gnl|Mm7|chr7 (3243944-3243739) | |
| 821-1038, gnl|monDom2|scaffold_191 (1331316-1331137) | |
| 821-1038, gnl|panTro1|chr20 (56744905-56745090) | |
| 821-1038, gnl|rheMac2|chr19 (60197367-60197552) | |
| 821-1038, gnl|rn3|chr1 (63986595-63986422) | |
| 821-1038, gnl|xenTro1|scaffold_374 (119473-119665) | |
| 1039-1187, gnl|bosTau2|chr18 (56063688-56063538) | |
| 1039-1187, gnl|Hg17|chr19 (59302291-59302146) | |
| 1039-1187, gnl|Mm7|chr7 (3243436-3243289) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 422-683, gnl|bosTau2|chr18 (56070724-56070463) | |
| 422-683, gnl|canFam2|chr1 (106167680-106167465) | |
| 422-683, gnl|danRer3|chr16 (741495-741698) | |
| 422-683, gnl|dasNov1|scaffold_66014 (42892-42677) | |
| 422-683, gnl|echTel1|scaffold_273438 (14129-13914) | |
| 422-683, gnl|hg17|chr19 (59309633-59309848) | |
| 422-683, gnl|Hg17|chr19 (59309893-59309632) | |
| 422-683, gnl|mm7|chr7 (3251786-3252001) | |
| 422-683, gnl|Mm7|chr7 (3252046-3251785) | |
| 422-683, gnl|monDom2|scaffold_191 (1329109-1328894) | |
| 422-683, gnl|oryCun1|scaffold_103119 (5158-4943) | |
| 422-683, gnl|panTro1|chr20 (56751495-56751710) | |
| 422-683, gnl|rheMac2|chr19 (60204003-60204218) | |
| 422-683, gnl|rn3|chr1 (63978366-63978151) | |
| 422-683, gnl|xenTro1|scaffold_374 (121638-121838) | |
| 821-1038, gnl|bosTau2|chr18 (56064251-56064034) | |
| 821-1038, gnl|canFam2|chr1 (106173881-106173696) | |
| 821-1038, gnl|dasNov1|scaffold_265394 (1646-1478) | |
| 821-1038, gnl|echTel1|scaffold_193138 (2465-2647) | |
| 821-1038, gnl|hg17|chr19 (59303149-59303334) | |
| 821-1038, gnl|Hg17|chr19 (59303365-59303142) | |
| 821-1038, gnl|loxAfr1|scaffold_45998 (11873-12045) | |
| 821-1038, gnl|mm7|chr7 (3243740-3243913) | |
| 821-1038, gnl|Mm7|chr7 (3243944-3243739) | |
| 821-1038, gnl|monDom2|scaffold_191 (1331316-1331137) | |
| 821-1038, gnl|panTro1|chr20 (56744905-56745090) | |
| 821-1038, gnl|rheMac2|chr19 (60197367-60197552) | |
| 821-1038, gnl|rn3|chr1 (63986595-63986422) | |
| 821-1038, gnl|xenTro1|scaffold_374 (119473-119665) | |
| 1039-1187, gnl|bosTau2|chr18 (56063688-56063538) | |
| 1039-1187, gnl|Hg17|chr19 (59302291-59302146) | |
| 1039-1187, gnl|Mm7|chr7 (3243436-3243289) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| nbm (0.198649) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nje (0.16592) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| pgl (0.118483) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.198649) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nje (0.16592) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| pgl (0.118483) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |