Non-Coding RNA Search

Ss1.1-Lng1-LNG010021A03.5

Sequence:


               
               CGGCGGCCTCACCTGTCCCCATTCACCGGCGGCGACCGGCGGCGGCGGGCAGCGCGTCAG
AGTTTAATAAACAGCGGACGGAGGGGCTGGCGGCGGCGGCGGGGCCGGAGCGAGCAGGGG
TTCGGCGGCCTCACCTGTCCCCATTCACCGGCGGCGACCGGCGGCGGCGGGCAGCGCGTC
AGGCGGAGAGGGCCGCCGCCAGGTGTGCATCAGAGGAACATGGCTCAAGAAACTAATCAC
AGCCAAGTGCCTATGCTTTGTTCCACTGGCTGCGGATTTTATGGAAACCCTCGTACAAAC
GGCATGTGTTCAGTATGCTATAAAGAACATCTTCAAAGACAGAATAGTAGTAATGGTAGA
ATAAGCCCACCTGCACCTTCTGTCAGTAGTCTGTCTGAGTCTTTACCAGTTCAGTGCACA
GATGGCAGTGTCCCAGAAGCTCAGTCAACGTTAGACTCTACATCTTCATCTTTGCAGCCA
AGCCCTGTACCAAATCAGTCACTTTTATCAGAATCTGTAGCATCATCCCAAGTGGACAGT
ACATCTGTGGATAAAGCAATACCTGAAACAGAAGACCTGCAAGCTTCAGTATCAGATACG
GCACAGCAGCCATCTGAAGAGCAAAGCAAGTCTCTTGAAAAACCAAAACAAAAAAAGAAT
CGCTGTTTCATGTGCAGGAAGAAAGTGGGACTTACTGGGTTTGAATGCCGGTGTGGAAAT
GTTTACTGTGGTGTACACCGTTACTCAGATGTACACAATTGCTCTTACAATTACAAAGCT
GATGCTGCTGAGAAAATCAGAAAAGAAAATCCAGTAGTTGTTGGTGAAAAGATCCAGAAG
ATTTGAACTCCTGCTGGAATACAAAATCCTTTGACCATCTGCAAACTAAAAATTGACTTG
AGGTTTTTTTTCCTAGTCATTGGGAATGTAGAGCAATGTATCTTGCATAGACCTTTTAAT
CATGCATGTCATCAGAAGAATAGATTTTTGTTTTTGTTTTGAAAATGACTCTGAACATTT
ATTTCCATTGCAGTTTCTGTGGCTGAAAAGACTTAAGTAAACTTTACAAGTATTATCCTT
TTAAGATCATTTTAATTTTAGTTGAGTGCAGAGGGCTTTTATAACAAACGTGGAGAAATT
TCAGAGGGCTGTGATTTTTTTCCAGTATTAAACATGCATGCGTTAATCTTGCAGTTTATT
TTCTCATTGTGTATGTAAATATAGCTTTTCTCTGCAGCACGATTTCTCTTTTGATAATAC
CCTTTAGGGTACAACTAGTTATCAGTAACTGAATGTATCTTAATCATTATGGCTGCTTCT
GTTTTTCATTAACAAAGGTTATACATATGTTAGCATATAGTTTCTTTGCACCCACTATTT
ATGTCGGAATCATTTGTCACAAGAGAGTGTGTGCTGATGAGATTCCAAGTTTGTGTGTTT
TTAATTTTTTTGAGCGAGGGAAGGAAAAGCTGTATGCATTTCATTGCTGACTGCAGGTTT
CTTTCAGGTTACGTTCATCGGTCTGTGTGTATACAATATGAAGAATGATCTGAAGTAATT
GTGCTGTATTTATGTTTATCCACCAGTCTTTGATTAAATAAAAAGGAAAAATATAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCGGCCTCACCTGTCCCCATTCACCGGCGGCGACCGGCGGCGGCGGGCAGCGCGTCAG
AGTTTAATAAACAGCGGACGGAGGGGCTGGCGGCGGCGGCGGGGCCGGAGCGAGCAGGGG
TTCGGCGGCCTCACCTGTCCCCATTCACCGGCGGCGACCGGCGGCGGCGGGCAGCGCGTC
AGGCGGAGAGGGCCGCCGCCAGGTGTGCATCAGAGGAACATGGCTCAAGAAACTAATCAC
AGCCAAGTGCCTATGCTTTGTTCCACTGGCTGCGGATTTTATGGAAACCCTCGTACAAAC
GGCATGTGTTCAGTATGCTATAAAGAACATCTTCAAAGACAGAATAGTAGTAATGGTAGA
ATAAGCCCACCTGCACCTTCTGTCAGTAGTCTGTCTGAGTCTTTACCAGTTCAGTGCACA
GATGGCAGTGTCCCAGAAGCTCAGTCAACGTTAGACTCTACATCTTCATCTTTGCAGCCA
AGCCCTGTACCAAATCAGTCACTTTTATCAGAATCTGTAGCATCATCCCAAGTGGACAGT
ACATCTGTGGATAAAGCAATACCTGAAACAGAAGACCTGCAAGCTTCAGTATCAGATACG
GCACAGCAGCCATCTGAAGAGCAAAGCAAGTCTCTTGAAAAACCAAAACAAAAAAAGAAT
CGCTGTTTCATGTGCAGGAAGAAAGTGGGACTTACTGGGTTTGAATGCCGGTGTGGAAAT
GTTTACTGTGGTGTACACCGTTACTCAGATGTACACAATTGCTCTTACAATTACAAAGCT
GATGCTGCTGAGAAAATCAGAAAAGAAAATCCAGTAGTTGTTGGTGAAAAGATCCAGAAG
ATTTGAACTCCTGCTGGAATACAAAATCCTTTGACCATCTGCAAACTAAAAATTGACTTG
AGGTTTTTTTTCCTAGTCATTGGGAATGTAGAGCAATGTATCTTGCATAGACCTTTTAAT
CATGCATGTCATCAGAAGAATAGATTTTTGTTTTTGTTTTGAAAATGACTCTGAACATTT
ATTTCCATTGCAGTTTCTGTGGCTGAAAAGACTTAAGTAAACTTTACAAGTATTATCCTT
TTAAGATCATTTTAATTTTAGTTGAGTGCAGAGGGCTTTTATAACAAACGTGGAGAAATT
TCAGAGGGCTGTGATTTTTTTCCAGTATTAAACATGCATGCGTTAATCTTGCAGTTTATT
TTCTCATTGTGTATGTAAATATAGCTTTTCTCTGCAGCACGATTTCTCTTTTGATAATAC
CCTTTAGGGTACAACTAGTTATCAGTAACTGAATGTATCTTAATCATTATGGCTGCTTCT
GTTTTTCATTAACAAAGGTTATACATATGTTAGCATATAGTTTCTTTGCACCCACTATTT
ATGTCGGAATCATTTGTCACAAGAGAGTGTGTGCTGATGAGATTCCAAGTTTGTGTGTTT
TTAATTTTTTTGAGCGAGGGAAGGAAAAGCTGTATGCATTTCATTGCTGACTGCAGGTTT
CTTTCAGGTTACGTTCATCGGTCTGTGTGTATACAATATGAAGAATGATCTGAAGTAATT
GTGCTGTATTTATGTTTATCCACCAGTCTTTGATTAAATAAAAAGGAAAAATATAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5R7S6_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5R7S6_PONPY

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               571-690, - strand, RNAz p=0.958982
               

               
               1203-1322, - strand, RNAz p=0.766725

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               571-690, - strand, RNAz p=0.958982
               

               
               1203-1322, - strand, RNAz p=0.766725

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               95-1418, gnl|bosTau2|chr15 (23689136-23687835)
               

               
               95-1418, gnl|Hg17|chr9 (35439727-35440903)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-1418, gnl|bosTau2|chr15 (23689136-23687835)
               

               
               95-1418, gnl|Hg17|chr9 (35439727-35440903)

Expressed library(ies): 55 entry(ies)

More info

Expressed library(ies): 55 entry(ies)

Help | Less info


               
               bfe (1.64843)
               

               
               cbl (1.14797)
               

               
               fce (0.814775)
               

               
               ste (0.811249)
               

               
               isp (0.75188)
               

               
               rec (0.692281)
               

               
               ret (0.643666)
               

               
               mga (0.64082)
               

               
               cty (0.62448)
               

               
               tbr (0.616713)
               

               
               spl (0.572738)
               

               
               ssp (0.542079)
               

               
               lyg (0.532411)
               

               
               duo (0.518403)
               

               
               ova (0.516529)
               

               
               pro (0.512033)
               

               
               tra (0.492368)
               

               
               ldo (0.485013)
               

               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               tes (0.415628)
               

               
               kid (0.389206)
               

               
               sug (0.381874)
               

               
               thg (0.380373)
               

               
               nep (0.36785)
               

               
               sag (0.36543)
               

               
               ill (0.351185)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 55 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (1.64843)
               

               
               cbl (1.14797)
               

               
               fce (0.814775)
               

               
               ste (0.811249)
               

               
               isp (0.75188)
               

               
               rec (0.692281)
               

               
               ret (0.643666)
               

               
               mga (0.64082)
               

               
               cty (0.62448)
               

               
               tbr (0.616713)
               

               
               spl (0.572738)
               

               
               ssp (0.542079)
               

               
               lyg (0.532411)
               

               
               duo (0.518403)
               

               
               ova (0.516529)
               

               
               pro (0.512033)
               

               
               tra (0.492368)
               

               
               ldo (0.485013)
               

               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               tes (0.415628)
               

               
               kid (0.389206)
               

               
               sug (0.381874)
               

               
               thg (0.380373)
               

               
               nep (0.36785)
               

               
               sag (0.36543)
               

               
               ill (0.351185)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	571-690, - strand, RNAz p=0.958982
	1203-1322, - strand, RNAz p=0.766725

	95-1418, gnl\|bosTau2\|chr15 (23689136-23687835)
	95-1418, gnl\|Hg17\|chr9 (35439727-35440903)

	bfe (1.64843)
	cbl (1.14797)
	fce (0.814775)
	ste (0.811249)
	isp (0.75188)
	rec (0.692281)
	ret (0.643666)
	mga (0.64082)
	cty (0.62448)
	tbr (0.616713)
	spl (0.572738)
	ssp (0.542079)
	lyg (0.532411)
	duo (0.518403)
	ova (0.516529)
	pro (0.512033)
	tra (0.492368)
	ldo (0.485013)
	lin (0.436808)
	amn (0.417711)
	tes (0.415628)
	kid (0.389206)
	sug (0.381874)
	thg (0.380373)
	nep (0.36785)
	sag (0.36543)
	ill (0.351185)
	eye (0.341006)
	vin (0.332557)
	ski (0.29347)
	cte (0.29274)
	liv (0.292569)
	pla (0.267344)
	nmm (0.265604)
	bla (0.248694)
	cbe (0.239234)
	med (0.232504)
	mgp (0.230681)
	ece (0.229305)
	nms (0.213858)
	fty (0.17584)
	ton (0.1755)
	nco (0.161734)
	fco (0.157208)
	lun (0.150489)
	pty (0.142714)
	csk (0.140746)
	hlv (0.139256)
	nca (0.136874)
	ute (0.132784)
	ese (0.126502)
	pgl (0.118483)
	ebs (0.118301)
	jca (0.11396)
	spc (0.113366)