Ss1.1-Lng1-LNG010021A09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGAAGGGAGCTTTGAGGGGCACCAGGCTGCAGTAAATGCAATTCAGATATTTGGAAATT TACTGTATACCTGTTCAGCAGATAAAACTGTCCGTGTTTATAATCTGGTGAGTCGGAAGT GCATTGGTGTCTTTGAGGGCCATACCTCCAAAGTGAACTGCCTCTTGGTTACTCAGACCT CTGGGAAGAGTGCCACCCTTTATACTGGTTCTAGTGATCACACTATTCGCTGCTATAATG TTAAGACACGAGAGTGTTTGGAGCAGTTACAGCTGGAAGACCGCGTTCTCTGCCTCCACA GTAGGTGGCGAATTCTCTACGCAGGACTGGCAAATGGCACTGTAGTCACCTTTAACATAA AGAACAACAAGCGACTTGAAATCTTTGAATGCCATGGCCCTCGGGCTGTCAGCTGTCTTG CCACAGCCCAGGAAGGGGCCCGAAAGCTGCTGGTTGTGGGGTCTTATGATTGTACCATCA GTGTACGCGATGCACGGAACGGACTGCTCCTTAGAACTCTGGAGGGCCACAGCAAAACCA TTCTCTGCATGAAGGTGGTGAATGACCTTGTGTTCAGTGGTTCTAGTGATCAGTCAGTCC ACGCCCACAACATTCATACTGGTGAGCTTGTGCGGATCTATAAAGGTCACAATCATGCAG TGACTGTGGTGAATATCCTAGGAAAAGTGATGGTGACGGCTTGCCTGGATAAATTTGTTC GTGTCTATGAATTACAGTCCCATGATCGATTGCAAGTTTATGGAGGACACAAAGACATGA TTATGTGTATGACCATCCATAAAAGTATGATTTATACTGGCTGTTATGACGGCAGTATTC AGGCCGTGAGGCTGAATCTGATGCAGAATTACCGCTGCTGGTGGCATGGTTGTGCTCTGA TATTTGGTGTTATAGACCATTTAAAACAACACTTGCTGACTGACCATACAAATCCAAACT TTCAGACTCTGAAATGTCGCTGGAAGAACTGTGATGCTTTTTTTACTGCTAGGAAAGGAT CCAAACAGGATGCTGCAGGACACATTGAACGGCATGCTGAGGATGACAGCAAAATTGATT CATGAAGTTTTTTGCCTCCCATGTTGGGAAGTCTTTAGTTGAAGTAATTTCACATTGGCC CCTTACATAGGCCAGTGTCTTCCCTTCCTCAGTGAAAGAGGGGAAGAGAAAGTGGTTACT AGCCAGGCTTACCACCTAGCATAAGTCTGGGCAGCTCTATGGGATGATAGGTTATACTTT TAAGTTCTTGCTGGAGGTTTGTCAGATTTAAACAGGTTTTTAAGGAACCATACTCCTCTG GGACAGTGTGGCATATAATAATTGATGCTACTAGTGTTCTCCAGATGTTTATTAAAGAAA CACATCTTAATTGGTTACCCAATTTGACCCTAATCATAACGTATATTTTGTTGATTTCAG TTTGTGATTTTTAGTTTGTGTTCTTATGATGGTTTAAACCTATAGTCAGATTTTTTAAAG TATAAATGTGCTCAAATGCTAGATTTTTAGGATCAATTTTGGTTTGTCCTTTATTACAGT CAGTTAATTGTAACAACTGGGTTTTTAAATTGGAAGCAAATAGATTCCTTTCCTAACAAT TATGTGCAGTGCGTTTCAGTATTCTTTTACTTTGCAGATGGGCAGTGCTGGCTTTAAATG CTAAAGGGACACACAGTAGATTTTTAACAGCTGGAGTAACTGCTCTGCTGATTATATTTT AGGAACTCAGACAACAAATCACATAATGACAAGTCCTTACCTACGGTACTTCCTATTAAA CCTCTGCAAGTTTTGCTAGAGTGCTCCGTTCAGTGCAGTACACCAGCCTCGTGTCTACTT GGAAGTCTCACTGTTAGATGTGGACACTCACAGCAGGCATTGGCAGGCTGTTCAAACTGG AGGTATAGCCTTTATCTCTCTTTCCAGTTTCTGACTCTCCCGGCAGGCTGTGGGTTTGGA AGCTTTTAGTTTGCTTTATTGCTGACCCCTCTCTCCCCTACTCTCTGACTGTGCCTAGAT TGATGGCAGCTGTCAGATACTTCCTCTGGGCTCACAGGGTGCTTTCTACCCACCCATAGT ACCCAGTGGGAGAGTCAGAATAAAGCATCTGAATACATTTTTAAGGCCTCAAGCAGGCGT CTTAAAGACCAGTGTCTTGACTTCACCTTCCCGCCAGCTGGAAAGGAAGGGGAGTGGAGT CGGGTGAAGGGAAAGACCCTGCCTGTCCATTGAGAGCAGCCAGATGAACAAAGCTTTCGT GAGGTGGCTTTGTTTTGGGATTTTCTCTGGACTCTTGAGAAGCCATTGAGGTGGTGCTTT CCAGCCTTTTGTTTCTAGATTCAAAACTGAAAGATTCTACAGAGAAAGAGAAGAAAAGGG AAAAGAGCCCAGCTTCATCGCATACCAAGCTTCAAACATGACCTCTACTCTTTCCTGGGA TTACAGAGCATCAGGTTTCTCTCCACCTCTGTTAGCACACATACTTCCACTCACGTGTCT TCACTAGGCAAGGCGACTTCACCTTGTAGACAGGTTTCAGGGGTGTGCAAATCCCCTGGA ATTGTGTGCAAGACTAAGAGGTGTTCTTTTTTTCCAGGAAAGGCTTCAGTGTTTCTTACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGAAGGGAGCTTTGAGGGGCACCAGGCTGCAGTAAATGCAATTCAGATATTTGGAAATT TACTGTATACCTGTTCAGCAGATAAAACTGTCCGTGTTTATAATCTGGTGAGTCGGAAGT GCATTGGTGTCTTTGAGGGCCATACCTCCAAAGTGAACTGCCTCTTGGTTACTCAGACCT CTGGGAAGAGTGCCACCCTTTATACTGGTTCTAGTGATCACACTATTCGCTGCTATAATG TTAAGACACGAGAGTGTTTGGAGCAGTTACAGCTGGAAGACCGCGTTCTCTGCCTCCACA GTAGGTGGCGAATTCTCTACGCAGGACTGGCAAATGGCACTGTAGTCACCTTTAACATAA AGAACAACAAGCGACTTGAAATCTTTGAATGCCATGGCCCTCGGGCTGTCAGCTGTCTTG CCACAGCCCAGGAAGGGGCCCGAAAGCTGCTGGTTGTGGGGTCTTATGATTGTACCATCA GTGTACGCGATGCACGGAACGGACTGCTCCTTAGAACTCTGGAGGGCCACAGCAAAACCA TTCTCTGCATGAAGGTGGTGAATGACCTTGTGTTCAGTGGTTCTAGTGATCAGTCAGTCC ACGCCCACAACATTCATACTGGTGAGCTTGTGCGGATCTATAAAGGTCACAATCATGCAG TGACTGTGGTGAATATCCTAGGAAAAGTGATGGTGACGGCTTGCCTGGATAAATTTGTTC GTGTCTATGAATTACAGTCCCATGATCGATTGCAAGTTTATGGAGGACACAAAGACATGA TTATGTGTATGACCATCCATAAAAGTATGATTTATACTGGCTGTTATGACGGCAGTATTC AGGCCGTGAGGCTGAATCTGATGCAGAATTACCGCTGCTGGTGGCATGGTTGTGCTCTGA TATTTGGTGTTATAGACCATTTAAAACAACACTTGCTGACTGACCATACAAATCCAAACT TTCAGACTCTGAAATGTCGCTGGAAGAACTGTGATGCTTTTTTTACTGCTAGGAAAGGAT CCAAACAGGATGCTGCAGGACACATTGAACGGCATGCTGAGGATGACAGCAAAATTGATT CATGAAGTTTTTTGCCTCCCATGTTGGGAAGTCTTTAGTTGAAGTAATTTCACATTGGCC CCTTACATAGGCCAGTGTCTTCCCTTCCTCAGTGAAAGAGGGGAAGAGAAAGTGGTTACT AGCCAGGCTTACCACCTAGCATAAGTCTGGGCAGCTCTATGGGATGATAGGTTATACTTT TAAGTTCTTGCTGGAGGTTTGTCAGATTTAAACAGGTTTTTAAGGAACCATACTCCTCTG GGACAGTGTGGCATATAATAATTGATGCTACTAGTGTTCTCCAGATGTTTATTAAAGAAA CACATCTTAATTGGTTACCCAATTTGACCCTAATCATAACGTATATTTTGTTGATTTCAG TTTGTGATTTTTAGTTTGTGTTCTTATGATGGTTTAAACCTATAGTCAGATTTTTTAAAG TATAAATGTGCTCAAATGCTAGATTTTTAGGATCAATTTTGGTTTGTCCTTTATTACAGT CAGTTAATTGTAACAACTGGGTTTTTAAATTGGAAGCAAATAGATTCCTTTCCTAACAAT TATGTGCAGTGCGTTTCAGTATTCTTTTACTTTGCAGATGGGCAGTGCTGGCTTTAAATG CTAAAGGGACACACAGTAGATTTTTAACAGCTGGAGTAACTGCTCTGCTGATTATATTTT AGGAACTCAGACAACAAATCACATAATGACAAGTCCTTACCTACGGTACTTCCTATTAAA CCTCTGCAAGTTTTGCTAGAGTGCTCCGTTCAGTGCAGTACACCAGCCTCGTGTCTACTT GGAAGTCTCACTGTTAGATGTGGACACTCACAGCAGGCATTGGCAGGCTGTTCAAACTGG AGGTATAGCCTTTATCTCTCTTTCCAGTTTCTGACTCTCCCGGCAGGCTGTGGGTTTGGA AGCTTTTAGTTTGCTTTATTGCTGACCCCTCTCTCCCCTACTCTCTGACTGTGCCTAGAT TGATGGCAGCTGTCAGATACTTCCTCTGGGCTCACAGGGTGCTTTCTACCCACCCATAGT ACCCAGTGGGAGAGTCAGAATAAAGCATCTGAATACATTTTTAAGGCCTCAAGCAGGCGT CTTAAAGACCAGTGTCTTGACTTCACCTTCCCGCCAGCTGGAAAGGAAGGGGAGTGGAGT CGGGTGAAGGGAAAGACCCTGCCTGTCCATTGAGAGCAGCCAGATGAACAAAGCTTTCGT GAGGTGGCTTTGTTTTGGGATTTTCTCTGGACTCTTGAGAAGCCATTGAGGTGGTGCTTT CCAGCCTTTTGTTTCTAGATTCAAAACTGAAAGATTCTACAGAGAAAGAGAAGAAAAGGG AAAAGAGCCCAGCTTCATCGCATACCAAGCTTCAAACATGACCTCTACTCTTTCCTGGGA TTACAGAGCATCAGGTTTCTCTCCACCTCTGTTAGCACACATACTTCCACTCACGTGTCT TCACTAGGCAAGGCGACTTCACCTTGTAGACAGGTTTCAGGGGTGTGCAAATCCCCTGGA ATTGTGTGCAAGACTAAGAGGTGTTCTTTTTTTCCAGGAAAGGCTTCAGTGTTTCTTACT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 1067-1186, - strand, RNAz p=0.595999 | |
| 1267-1384, - strand, RNAz p=0.628514 | |
| 1979-2127, - strand, RNAz p=0.834246 | |
| 2199-2317, + strand, RNAz p=0.999878 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1067-1186, - strand, RNAz p=0.595999 | |
| 1267-1384, - strand, RNAz p=0.628514 | |
| 1979-2127, - strand, RNAz p=0.834246 | |
| 2199-2317, + strand, RNAz p=0.999878 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AL831983, + |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 110-245, gnl|bosTau2|chr10 (17251000-17250865) | |
| 110-245, gnl|canFam2|chr30 (12398057-12398238) | |
| 110-245, gnl|danRer3|chrUn (183487410-183487269) | |
| 110-245, gnl|dasNov1|scaffold_5408 (80146-80328) | |
| 110-245, gnl|echTel1|scaffold_309926 (72969-72788) | |
| 110-245, gnl|fr1|chrUn (181863143-181863002) | |
| 110-245, gnl|galGal2|chr5 (22939637-22939787) | |
| 110-245, gnl|hg17|chr15 (40514844-40515027) | |
| 110-245, gnl|Hg17|chr15 (40515009-40514874) | |
| 110-245, gnl|loxAfr1|scaffold_5351 (39859-40038) | |
| 110-245, gnl|mm7|chr2 (120261231-120261412) | |
| 110-245, gnl|Mm7|chr2 (120261395-120261260) | |
| 110-245, gnl|monDom2|scaffold_53 (12107206-12107020) | |
| 110-245, gnl|oryCun1|scaffold_186357 (13710-13529) | |
| 110-245, gnl|panTro1|chr16 (40495773-40495956) | |
| 110-245, gnl|rheMac2|chr7 (20863880-20864063) | |
| 110-245, gnl|tetNig1|chr10 (11786512-11786653) | |
| 110-245, gnl|xenTro1|scaffold_117 (2117410-2117565) | |
| 361-555, gnl|bosTau2|chr10 (17246317-17246123) | |
| 361-555, gnl|canFam2|chr30 (12392134-12392362) | |
| 361-555, gnl|danRer3|chrUn (183488394-183488190) | |
| 361-555, gnl|dasNov1|scaffold_52236 (8526-8749) | |
| 361-555, gnl|echTel1|scaffold_309926 (76247-76019) | |
| 361-555, gnl|fr1|chrUn (181863653-181863431) | |
| 361-555, gnl|galGal2|chr5 (22937448-22937675) | |
| 361-555, gnl|hg17|chr15 (40504319-40504544) | |
| 361-555, gnl|Hg17|chr15 (40504517-40504323) | |
| 361-555, gnl|loxAfr1|scaffold_5351 (36777-37005) | |
| 361-555, gnl|mm7|chr2 (120256759-120256982) | |
| 361-555, gnl|Mm7|chr2 (120256956-120256762) | |
| 361-555, gnl|monDom2|scaffold_53 (12117042-12116830) | |
| 361-555, gnl|oryCun1|scaffold_204530 (59305-59533) | |
| 361-555, gnl|panTro1|chr16 (40485273-40485498) | |
| 361-555, gnl|rheMac2|chr7 (20853847-20854072) | |
| 361-555, gnl|rn3|chr3 (106907295-106907518) | |
| 361-555, gnl|tetNig1|chr10 (11785996-11786194) | |
| 361-555, gnl|xenTro1|scaffold_117 (2115817-2116032) | |
| 612-737, gnl|bosTau2|chr10 (17244933-17244808) | |
| 612-737, gnl|canFam2|chr30 (12390164-12390327) | |
| 612-737, gnl|danRer3|chrUn (183489541-183489395) | |
| 612-737, gnl|dasNov1|scaffold_52236 (6731-6893) | |
| 612-737, gnl|echTel1|scaffold_309926 (78116-77950) | |
| 612-737, gnl|fr1|chrUn (181864150-181863991) | |
| 612-737, gnl|galGal2|chr5 (22935800-22935979) | |
| 612-737, gnl|hg17|chr15 (40501966-40502128) | |
| 612-737, gnl|Hg17|chr15 (40502116-40501991) | |
| 612-737, gnl|loxAfr1|scaffold_5351 (35126-35289) | |
| 612-737, gnl|mm7|chr2 (120254967-120255129) | |
| 612-737, gnl|Mm7|chr2 (120255117-120254992) | |
| 612-737, gnl|monDom2|scaffold_53 (12118296-12118127) | |
| 612-737, gnl|oryCun1|scaffold_204530 (57287-57449) | |
| 612-737, gnl|panTro1|chr16 (40482924-40483086) | |
| 612-737, gnl|rheMac2|chr7 (20851443-20851603) | |
| 612-737, gnl|tetNig1|chr10 (11785625-11785748) | |
| 612-737, gnl|xenTro1|scaffold_117 (2113831-2113999) | |
| 1027-2638, gnl|bosTau2|chr10 (17241203-17239588) | |
| 1027-2638, gnl|Hg17|chr15 (40496852-40494946) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 110-245, gnl|bosTau2|chr10 (17251000-17250865) | |
| 110-245, gnl|canFam2|chr30 (12398057-12398238) | |
| 110-245, gnl|danRer3|chrUn (183487410-183487269) | |
| 110-245, gnl|dasNov1|scaffold_5408 (80146-80328) | |
| 110-245, gnl|echTel1|scaffold_309926 (72969-72788) | |
| 110-245, gnl|fr1|chrUn (181863143-181863002) | |
| 110-245, gnl|galGal2|chr5 (22939637-22939787) | |
| 110-245, gnl|hg17|chr15 (40514844-40515027) | |
| 110-245, gnl|Hg17|chr15 (40515009-40514874) | |
| 110-245, gnl|loxAfr1|scaffold_5351 (39859-40038) | |
| 110-245, gnl|mm7|chr2 (120261231-120261412) | |
| 110-245, gnl|Mm7|chr2 (120261395-120261260) | |
| 110-245, gnl|monDom2|scaffold_53 (12107206-12107020) | |
| 110-245, gnl|oryCun1|scaffold_186357 (13710-13529) | |
| 110-245, gnl|panTro1|chr16 (40495773-40495956) | |
| 110-245, gnl|rheMac2|chr7 (20863880-20864063) | |
| 110-245, gnl|tetNig1|chr10 (11786512-11786653) | |
| 110-245, gnl|xenTro1|scaffold_117 (2117410-2117565) | |
| 361-555, gnl|bosTau2|chr10 (17246317-17246123) | |
| 361-555, gnl|canFam2|chr30 (12392134-12392362) | |
| 361-555, gnl|danRer3|chrUn (183488394-183488190) | |
| 361-555, gnl|dasNov1|scaffold_52236 (8526-8749) | |
| 361-555, gnl|echTel1|scaffold_309926 (76247-76019) | |
| 361-555, gnl|fr1|chrUn (181863653-181863431) | |
| 361-555, gnl|galGal2|chr5 (22937448-22937675) | |
| 361-555, gnl|hg17|chr15 (40504319-40504544) | |
| 361-555, gnl|Hg17|chr15 (40504517-40504323) | |
| 361-555, gnl|loxAfr1|scaffold_5351 (36777-37005) | |
| 361-555, gnl|mm7|chr2 (120256759-120256982) | |
| 361-555, gnl|Mm7|chr2 (120256956-120256762) | |
| 361-555, gnl|monDom2|scaffold_53 (12117042-12116830) | |
| 361-555, gnl|oryCun1|scaffold_204530 (59305-59533) | |
| 361-555, gnl|panTro1|chr16 (40485273-40485498) | |
| 361-555, gnl|rheMac2|chr7 (20853847-20854072) | |
| 361-555, gnl|rn3|chr3 (106907295-106907518) | |
| 361-555, gnl|tetNig1|chr10 (11785996-11786194) | |
| 361-555, gnl|xenTro1|scaffold_117 (2115817-2116032) | |
| 612-737, gnl|bosTau2|chr10 (17244933-17244808) | |
| 612-737, gnl|canFam2|chr30 (12390164-12390327) | |
| 612-737, gnl|danRer3|chrUn (183489541-183489395) | |
| 612-737, gnl|dasNov1|scaffold_52236 (6731-6893) | |
| 612-737, gnl|echTel1|scaffold_309926 (78116-77950) | |
| 612-737, gnl|fr1|chrUn (181864150-181863991) | |
| 612-737, gnl|galGal2|chr5 (22935800-22935979) | |
| 612-737, gnl|hg17|chr15 (40501966-40502128) | |
| 612-737, gnl|Hg17|chr15 (40502116-40501991) | |
| 612-737, gnl|loxAfr1|scaffold_5351 (35126-35289) | |
| 612-737, gnl|mm7|chr2 (120254967-120255129) | |
| 612-737, gnl|Mm7|chr2 (120255117-120254992) | |
| 612-737, gnl|monDom2|scaffold_53 (12118296-12118127) | |
| 612-737, gnl|oryCun1|scaffold_204530 (57287-57449) | |
| 612-737, gnl|panTro1|chr16 (40482924-40483086) | |
| 612-737, gnl|rheMac2|chr7 (20851443-20851603) | |
| 612-737, gnl|tetNig1|chr10 (11785625-11785748) | |
| 612-737, gnl|xenTro1|scaffold_117 (2113831-2113999) | |
| 1027-2638, gnl|bosTau2|chr10 (17241203-17239588) | |
| 1027-2638, gnl|Hg17|chr15 (40496852-40494946) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| bfe (1.049) | |
| hea (1.02249) | |
| isp (0.601504) | |
| ssp (0.542079) | |
| tbr (0.462535) | |
| ldo (0.38801) | |
| sag (0.36543) | |
| sme (0.305437) | |
| nep (0.183925) | |
| sin (0.174948) | |
| fco (0.157208) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ste (0.135208) | |
| bla (0.124347) | |
| ecc (0.115035) | |
| cbl (0.114797) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bfe (1.049) | |
| hea (1.02249) | |
| isp (0.601504) | |
| ssp (0.542079) | |
| tbr (0.462535) | |
| ldo (0.38801) | |
| sag (0.36543) | |
| sme (0.305437) | |
| nep (0.183925) | |
| sin (0.174948) | |
| fco (0.157208) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ste (0.135208) | |
| bla (0.124347) | |
| ecc (0.115035) | |
| cbl (0.114797) |