Ss1.1-Lng1-LNG010021D09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCTCGCTAGTGATGACGCCCGTCCGGGGCGGTGAAGAGGGAAGATGGCGGCGCCCATGG AGGTGGCCGTGTGTACGGACTCAGCGGCCCAGCTGTGGAGCTGCGTCGTGTGGGAGCTGC ACTCGGGCGCCAACCTGCTCACGTACCGCGGCGGCCAGGCCGGGCCTCGCGGACTGGCTC TGCTCAATGGCGAGTATCTGCTGGCGGCGCAGCTGGGCAAGAACTACATCAGCGCCTGGG AGCTGCAGAGAAAGGACCAGCTTCAGCAGAAGATCATGTGCCCTGGGCCTGTGACCTGTC TCACCACATCGCCCAATGGCCTGTACGTGCTGGCAGGGATCGCAGAGAGCATATACCTGT GGGAGGTCTCCACAGGGAATCTCCTGGTCATCCTGAGCCGCCACTACCAGGATGTGTCAT GCCTTCAGTTCACAGGGGATAGCAGCCACTTCCTCTCAGGGGGCAAGGACTGCCTGGTGC TGGCCTGGAGCCTCTGCAGCGTGCTGCAGGCAGACCCCTCCAGGACCCCCGCCCCCCGGC ACGTCTGGTCTCGCCACACCCTCCCCATCACAGACCTGCACTGCGGCTTTGGGGGGCCCC TTGCCCGGGTGGCCACTGCCTCACTGGACCAGACAGTGAAGCTGTGGGAGGTCTCCTCGG GCGAGCTGCTCCTGTCTGTGCTCTTCGACGTGGGCATCATGGCTGTGACCATGGACCTGG CTGAGCATCACATGTTCTGCGGTGGCAGCGACGGCTCCATCTTTCAGGTCGACCTCTGTA CCTGGCCTGGGCAGCGAGAGAAGAGCTTCCAGCCGGAGCAGGACAGCGGGAAGGTGTTCA GAGGGCACAGGAACCAGGTGACCTGCTTGTCGGTGTCCACGGACGGCAGTGTGCTGCTCT CGGGCTCCCACGATGAGACCGTGCGACTCTGGGACGTGCAGAGCCAGCAGTGCCTCAGGA CCGTGACCCTCAAAGGCCCGGTGACCAATGCCACCATCATGCTGGCGCCCGTCAGCATGC TGAGCTCCGACTTCAGGCCCAGCCTGCCCCTCCCCCACTTCAACAAGCACCTGCTGGGTG CCGAGCATGGGGATGAGCCGCACCACGGGGGCCTCACGCTGCGCCTGGGCCTCCACCAGC AGGGGTCAGAGCCCAGCTATCTGGAGCGGGCAGAGCAGCTGCACTCCGTGATGTGCAGCA CAATGGAGAAGAATGTCCTGGGCGGCCAGGACCAGCTGCGGATCCGCGTGACGGAGCTGG AGGATGAGGTGCGGAATCTGCGCAAGATCAACCGAGATCTGTTTGACTTCTCCACGCACA TCATCACACGGCCAGCCAAGTGAGCCCAGCCGCTGGCCTAGGACGGCGCCCGCGGGGTTG CAACCAGGCCAGCAGATCCCAGGGCCAGAGCCCGTCTTCTACCAGTGTCTTACCTTGGAC GTTCACTCTGACCAGAAGTCTCCGTCCCTTGTTGACCCACTGTCCTGTCCTGACCTGCCT TGTCATGTTGGTGCTGTTCTTTTTCTAACAAAAGACCTGAAATCCTCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCTCGCTAGTGATGACGCCCGTCCGGGGCGGTGAAGAGGGAAGATGGCGGCGCCCATGG AGGTGGCCGTGTGTACGGACTCAGCGGCCCAGCTGTGGAGCTGCGTCGTGTGGGAGCTGC ACTCGGGCGCCAACCTGCTCACGTACCGCGGCGGCCAGGCCGGGCCTCGCGGACTGGCTC TGCTCAATGGCGAGTATCTGCTGGCGGCGCAGCTGGGCAAGAACTACATCAGCGCCTGGG AGCTGCAGAGAAAGGACCAGCTTCAGCAGAAGATCATGTGCCCTGGGCCTGTGACCTGTC TCACCACATCGCCCAATGGCCTGTACGTGCTGGCAGGGATCGCAGAGAGCATATACCTGT GGGAGGTCTCCACAGGGAATCTCCTGGTCATCCTGAGCCGCCACTACCAGGATGTGTCAT GCCTTCAGTTCACAGGGGATAGCAGCCACTTCCTCTCAGGGGGCAAGGACTGCCTGGTGC TGGCCTGGAGCCTCTGCAGCGTGCTGCAGGCAGACCCCTCCAGGACCCCCGCCCCCCGGC ACGTCTGGTCTCGCCACACCCTCCCCATCACAGACCTGCACTGCGGCTTTGGGGGGCCCC TTGCCCGGGTGGCCACTGCCTCACTGGACCAGACAGTGAAGCTGTGGGAGGTCTCCTCGG GCGAGCTGCTCCTGTCTGTGCTCTTCGACGTGGGCATCATGGCTGTGACCATGGACCTGG CTGAGCATCACATGTTCTGCGGTGGCAGCGACGGCTCCATCTTTCAGGTCGACCTCTGTA CCTGGCCTGGGCAGCGAGAGAAGAGCTTCCAGCCGGAGCAGGACAGCGGGAAGGTGTTCA GAGGGCACAGGAACCAGGTGACCTGCTTGTCGGTGTCCACGGACGGCAGTGTGCTGCTCT CGGGCTCCCACGATGAGACCGTGCGACTCTGGGACGTGCAGAGCCAGCAGTGCCTCAGGA CCGTGACCCTCAAAGGCCCGGTGACCAATGCCACCATCATGCTGGCGCCCGTCAGCATGC TGAGCTCCGACTTCAGGCCCAGCCTGCCCCTCCCCCACTTCAACAAGCACCTGCTGGGTG CCGAGCATGGGGATGAGCCGCACCACGGGGGCCTCACGCTGCGCCTGGGCCTCCACCAGC AGGGGTCAGAGCCCAGCTATCTGGAGCGGGCAGAGCAGCTGCACTCCGTGATGTGCAGCA CAATGGAGAAGAATGTCCTGGGCGGCCAGGACCAGCTGCGGATCCGCGTGACGGAGCTGG AGGATGAGGTGCGGAATCTGCGCAAGATCAACCGAGATCTGTTTGACTTCTCCACGCACA TCATCACACGGCCAGCCAAGTGAGCCCAGCCGCTGGCCTAGGACGGCGCCCGCGGGGTTG CAACCAGGCCAGCAGATCCCAGGGCCAGAGCCCGTCTTCTACCAGTGTCTTACCTTGGAC GTTCACTCTGACCAGAAGTCTCCGTCCCTTGTTGACCCACTGTCCTGTCCTGACCTGCCT TGTCATGTTGGTGCTGTTCTTTTTCTAACAAAAGACCTGAAATCCTCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 516-641, - strand, RNAz p=0.546271 | |
| 1391-1506, - strand, RNAz p=0.860781 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 516-641, - strand, RNAz p=0.546271 | |
| 1391-1506, - strand, RNAz p=0.860781 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 2-255, gnl|bosTau2|chr7 (10264465-10264719) | |
| 2-255, gnl|Hg17|chr19 (935310-935564) | |
| 2-255, gnl|Mm7|chr10 (79740133-79740389) | |
| 498-641, gnl|bosTau2|chr7 (10267475-10267618) | |
| 498-641, gnl|canFam2|chr20 (60856654-60856501) | |
| 498-641, gnl|danRer3|chrUn (59353732-59353879) | |
| 498-641, gnl|fr1|chrUn (240108686-240108834) | |
| 498-641, gnl|galGal2|chr28 (2757055-2757210) | |
| 498-641, gnl|hg17|chr19 (941211-941368) | |
| 498-641, gnl|Hg17|chr19 (941221-941364) | |
| 498-641, gnl|mm7|chr10 (79745206-79745371) | |
| 498-641, gnl|Mm7|chr10 (79745225-79745367) | |
| 498-641, gnl|monDom2|scaffold_75 (7357910-7357755) | |
| 498-641, gnl|rheMac2|chr19 (737540-737697) | |
| 498-641, gnl|rn3|chr7 (11256559-11256394) | |
| 498-641, gnl|tetNig1|chrUn_random (107297168-107297316) | |
| 498-641, gnl|xenTro1|scaffold_342 (871048-870892) | |
| 974-1143, gnl|bosTau2|chr7 (10268746-10268915) | |
| 974-1143, gnl|Hg17|chr19 (942953-943122) | |
| 974-1143, gnl|Mm7|chr10 (79746574-79746743) | |
| 1210-1343, gnl|bosTau2|chr7 (10269592-10269725) | |
| 1210-1343, gnl|canFam2|chr20 (60854467-60854325) | |
| 1210-1343, gnl|dasNov1|scaffold_234654 (3958-3811) | |
| 1210-1343, gnl|hg17|chr19 (945201-945347) | |
| 1210-1343, gnl|Hg17|chr19 (945210-945342) | |
| 1210-1343, gnl|loxAfr1|scaffold_76957 (5903-6046) | |
| 1210-1343, gnl|mm7|chr10 (79747482-79747619) | |
| 1210-1343, gnl|Mm7|chr10 (79747485-79747615) | |
| 1210-1343, gnl|monDom2|scaffold_269 (287726-287828) | |
| 1210-1343, gnl|panTro1|chr20 (1001002-1001148) | |
| 1210-1343, gnl|rheMac2|chr19 (741403-741549) | |
| 1210-1343, gnl|rn3|chr7 (11253584-11253441) | |
| 1210-1343, gnl|xenTro1|scaffold_2227 (6608-6749) | |
| 1388-1546, gnl|bosTau2|chr7 (10269746-10269904) | |
| 1388-1546, gnl|Hg17|chr19 (945359-945559) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-255, gnl|bosTau2|chr7 (10264465-10264719) | |
| 2-255, gnl|Hg17|chr19 (935310-935564) | |
| 2-255, gnl|Mm7|chr10 (79740133-79740389) | |
| 498-641, gnl|bosTau2|chr7 (10267475-10267618) | |
| 498-641, gnl|canFam2|chr20 (60856654-60856501) | |
| 498-641, gnl|danRer3|chrUn (59353732-59353879) | |
| 498-641, gnl|fr1|chrUn (240108686-240108834) | |
| 498-641, gnl|galGal2|chr28 (2757055-2757210) | |
| 498-641, gnl|hg17|chr19 (941211-941368) | |
| 498-641, gnl|Hg17|chr19 (941221-941364) | |
| 498-641, gnl|mm7|chr10 (79745206-79745371) | |
| 498-641, gnl|Mm7|chr10 (79745225-79745367) | |
| 498-641, gnl|monDom2|scaffold_75 (7357910-7357755) | |
| 498-641, gnl|rheMac2|chr19 (737540-737697) | |
| 498-641, gnl|rn3|chr7 (11256559-11256394) | |
| 498-641, gnl|tetNig1|chrUn_random (107297168-107297316) | |
| 498-641, gnl|xenTro1|scaffold_342 (871048-870892) | |
| 974-1143, gnl|bosTau2|chr7 (10268746-10268915) | |
| 974-1143, gnl|Hg17|chr19 (942953-943122) | |
| 974-1143, gnl|Mm7|chr10 (79746574-79746743) | |
| 1210-1343, gnl|bosTau2|chr7 (10269592-10269725) | |
| 1210-1343, gnl|canFam2|chr20 (60854467-60854325) | |
| 1210-1343, gnl|dasNov1|scaffold_234654 (3958-3811) | |
| 1210-1343, gnl|hg17|chr19 (945201-945347) | |
| 1210-1343, gnl|Hg17|chr19 (945210-945342) | |
| 1210-1343, gnl|loxAfr1|scaffold_76957 (5903-6046) | |
| 1210-1343, gnl|mm7|chr10 (79747482-79747619) | |
| 1210-1343, gnl|Mm7|chr10 (79747485-79747615) | |
| 1210-1343, gnl|monDom2|scaffold_269 (287726-287828) | |
| 1210-1343, gnl|panTro1|chr20 (1001002-1001148) | |
| 1210-1343, gnl|rheMac2|chr19 (741403-741549) | |
| 1210-1343, gnl|rn3|chr7 (11253584-11253441) | |
| 1210-1343, gnl|xenTro1|scaffold_2227 (6608-6749) | |
| 1388-1546, gnl|bosTau2|chr7 (10269746-10269904) | |
| 1388-1546, gnl|Hg17|chr19 (945359-945559) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| clu (0.239292) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| fty (0.17584) | |
| nje (0.16592) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.239292) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| fty (0.17584) | |
| nje (0.16592) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |