Ss1.1-Lng1-LNG010021D12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTACTGGTGGCCTCCCCGGTATCCAGCCGACCCGGCCGGGTGGACCCTTAGCTGGCGCC GGCTCCGGGAAGCCTAGAGAAGGGGAGGGGCGGACTCAGCTGGAGCTGAGCATCGTCCGG GTGGGCTGAGAGGCCGTGGCCTCTCCGTTCGAAGCACCACCTGTCGCGGGGCGAGACTTG TGGTGAGAGAAATGATGTTGTCCAGATTTAAAATAGTTGCCACTCCTTGTACTCTAGCAT GTCGTCATTTGCACATAAAAGAGAAAGGCAAGCCACTTATGTTGAACCCAAGAACAAACA AGGGAATGGCATTTACATTACAGGAACGACAAATGCTGGGTCTTCAAGGACTTCTCCCTC CCAAAATAGAGACACAAGATATTCAAGCTTTACGATTCCATAGAAACGTGAAAAAGCTGA ATGGCCCTTTGGAAAAATACATCTATATAATGGGAATTCAAGAAAGAAATGAGAAGTTGT TTTATAGAATACTGCAAGATGATATTGAAACTCTAATGCCAATTGTATATACACCAACAG TTGGTCTTGCCTGTTCCCAGTATGGACACATCTTTAGAAGACCCAAGGGATTATTTATTT CAATCTCAGACAGAGGTCATGTTAGATCAATTGTGGATAACTGGCCAGAAAATCATGTTA AGGCTGTTGTGGTGACTGATGGAGAGAGAATTCTGGGTCTTGGAGATCTGGGTGTCTATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTACTGGTGGCCTCCCCGGTATCCAGCCGACCCGGCCGGGTGGACCCTTAGCTGGCGCC GGCTCCGGGAAGCCTAGAGAAGGGGAGGGGCGGACTCAGCTGGAGCTGAGCATCGTCCGG GTGGGCTGAGAGGCCGTGGCCTCTCCGTTCGAAGCACCACCTGTCGCGGGGCGAGACTTG TGGTGAGAGAAATGATGTTGTCCAGATTTAAAATAGTTGCCACTCCTTGTACTCTAGCAT GTCGTCATTTGCACATAAAAGAGAAAGGCAAGCCACTTATGTTGAACCCAAGAACAAACA AGGGAATGGCATTTACATTACAGGAACGACAAATGCTGGGTCTTCAAGGACTTCTCCCTC CCAAAATAGAGACACAAGATATTCAAGCTTTACGATTCCATAGAAACGTGAAAAAGCTGA ATGGCCCTTTGGAAAAATACATCTATATAATGGGAATTCAAGAAAGAAATGAGAAGTTGT TTTATAGAATACTGCAAGATGATATTGAAACTCTAATGCCAATTGTATATACACCAACAG TTGGTCTTGCCTGTTCCCAGTATGGACACATCTTTAGAAGACCCAAGGGATTATTTATTT CAATCTCAGACAGAGGTCATGTTAGATCAATTGTGGATAACTGGCCAGAAAATCATGTTA AGGCTGTTGTGGTGACTGATGGAGAGAGAATTCTGGGTCTTGGAGATCTGGGTGTCTATG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 82 entry(ies) | More info |
| Aligned organism(s): 82 entry(ies) | Help | Less info |
| 3-187, gnl|bosTau2|chr24 (39367210-39367021) | |
| 3-187, gnl|dasNov1|scaffold_29533 (47705-48597) | |
| 3-187, gnl|dasNov1|scaffold_29533 (48180-48036) | |
| 3-187, gnl|echTel1|scaffold_276947 (4328-3565) | |
| 3-187, gnl|hg17|chr18 (46659203-46660071) | |
| 3-187, gnl|Hg17|chr18 (46659499-46659681) | |
| 3-187, gnl|hg17|chr9 (29816523-29816667) | |
| 3-187, gnl|loxAfr1|scaffold_87609 (3739-4628) | |
| 3-187, gnl|mm7|chr18 (74210057-74209351) | |
| 3-187, gnl|Mm7|chr18 (74209791-74209635) | |
| 3-187, gnl|mm7|chrX (98056715-98056582) | |
| 3-187, gnl|oryCun1|scaffold_200400 (74965-75836) | |
| 3-187, gnl|oryCun1|scaffold_200400 (75417-75277) | |
| 3-187, gnl|panTro1|chr17 (43254867-43255735) | |
| 3-187, gnl|panTro1|chr17 (43255335-43255191) | |
| 3-187, gnl|rheMac2|chr15 (47270675-47270531) | |
| 3-187, gnl|rheMac2|chr18 (43975780-43976785) | |
| 3-187, gnl|rn3|chr18 (70664357-70663660) | |
| 301-436, gnl|bosTau2|chr24 (39349790-39349655) | |
| 301-436, gnl|canFam2|chr1 (27049689-27049500) | |
| 301-436, gnl|canFam2|chr1 (27049524-27049657) | |
| 301-436, gnl|danRer3|chr12 (22811020-22811184) | |
| 301-436, gnl|danRer3|chr12 (22811172-22811046) | |
| 301-436, gnl|dasNov1|scaffold_41099 (1285-1092) | |
| 301-436, gnl|dasNov1|scaffold_41099 (1116-1252) | |
| 301-436, gnl|echTel1|scaffold_178069 (4783-4597) | |
| 301-436, gnl|echTel1|scaffold_178069 (4613-4746) | |
| 301-436, gnl|fr1|chrUn (22467441-22467259) | |
| 301-436, gnl|fr1|chrUn (22467292-22467417) | |
| 301-436, gnl|hg17|chr18 (46688397-46688590) | |
| 301-436, gnl|Hg17|chr18 (46688429-46688564) | |
| 301-436, gnl|hg17|chr9 (29816260-29816398) | |
| 301-436, gnl|loxAfr1|scaffold_24871 (39714-39524) | |
| 301-436, gnl|loxAfr1|scaffold_24871 (39548-39684) | |
| 301-436, gnl|mm7|chr18 (74196235-74196041) | |
| 301-436, gnl|mm7|chr18 (74196063-74196198) | |
| 301-436, gnl|Mm7|chr18 (74196200-74196065) | |
| 301-436, gnl|monDom2|scaffold_95 (111634-111821) | |
| 301-436, gnl|monDom2|scaffold_95 (111799-111662) | |
| 301-436, gnl|panTro1|chr17 (43284102-43284295) | |
| 301-436, gnl|panTro1|chr17 (43284270-43284135) | |
| 301-436, gnl|rheMac2|chr15 (47270939-47270801) | |
| 301-436, gnl|rheMac2|chr18 (44009217-44009411) | |
| 301-436, gnl|rn3|chr18 (70651503-70651316) | |
| 301-436, gnl|rn3|chr18 (70651336-70651474) | |
| 301-436, gnl|tetNig1|chr12 (8210628-8210808) | |
| 301-436, gnl|tetNig1|chr12 (8210791-8210665) | |
| 301-436, gnl|xenTro1|scaffold_731 (485383-485555) | |
| 301-436, gnl|xenTro1|scaffold_731 (485550-485415) | |
| 437-587, gnl|bosTau2|chr24 (39347054-39346904) | |
| 437-587, gnl|canFam2|chr1 (27047364-27047159) | |
| 437-587, gnl|canFam2|chr1 (27047193-27047340) | |
| 437-587, gnl|danRer3|chr12 (22811567-22811739) | |
| 437-587, gnl|danRer3|chr12 (22811720-22811573) | |
| 437-587, gnl|dasNov1|scaffold_199349 (4221-4021) | |
| 437-587, gnl|dasNov1|scaffold_199349 (4055-4202) | |
| 437-587, gnl|echTel1|scaffold_178069 (252-47) | |
| 437-587, gnl|echTel1|scaffold_178069 (81-228) | |
| 437-587, gnl|fr1|chrUn (22467187-22467005) | |
| 437-587, gnl|fr1|chrUn (22467034-22467181) | |
| 437-587, gnl|hg17|chr18 (46693149-46693352) | |
| 437-587, gnl|Hg17|chr18 (46693169-46693319) | |
| 437-587, gnl|hg17|chr9 (29816112-29816259) | |
| 437-587, gnl|loxAfr1|scaffold_24871 (29424-29219) | |
| 437-587, gnl|loxAfr1|scaffold_24871 (29253-29400) | |
| 437-587, gnl|mm7|chr18 (74192336-74192132) | |
| 437-587, gnl|mm7|chr18 (74192165-74192312) | |
| 437-587, gnl|Mm7|chr18 (74192314-74192164) | |
| 437-587, gnl|monDom2|scaffold_95 (113201-113412) | |
| 437-587, gnl|monDom2|scaffold_95 (113380-113233) | |
| 437-587, gnl|oryCun1|scaffold_177724 (95810-96016) | |
| 437-587, gnl|oryCun1|scaffold_177724 (95981-95834) | |
| 437-587, gnl|panTro1|chr17 (43288856-43289059) | |
| 437-587, gnl|panTro1|chr17 (43289027-43288880) | |
| 437-587, gnl|rheMac2|chr15 (47271085-47270940) | |
| 437-587, gnl|rheMac2|chr18 (44013935-44014140) | |
| 437-587, gnl|rn3|chr18 (70647960-70647758) | |
| 437-587, gnl|rn3|chr18 (70647789-70647936) | |
| 437-587, gnl|tetNig1|chr12 (8210887-8211085) | |
| 437-587, gnl|tetNig1|chr12 (8211058-8210911) | |
| 437-587, gnl|xenTro1|scaffold_731 (486256-486470) | |
| 437-587, gnl|xenTro1|scaffold_731 (486428-486281) |
| Aligned organism(s): 82 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-187, gnl|bosTau2|chr24 (39367210-39367021) | |
| 3-187, gnl|dasNov1|scaffold_29533 (47705-48597) | |
| 3-187, gnl|dasNov1|scaffold_29533 (48180-48036) | |
| 3-187, gnl|echTel1|scaffold_276947 (4328-3565) | |
| 3-187, gnl|hg17|chr18 (46659203-46660071) | |
| 3-187, gnl|Hg17|chr18 (46659499-46659681) | |
| 3-187, gnl|hg17|chr9 (29816523-29816667) | |
| 3-187, gnl|loxAfr1|scaffold_87609 (3739-4628) | |
| 3-187, gnl|mm7|chr18 (74210057-74209351) | |
| 3-187, gnl|Mm7|chr18 (74209791-74209635) | |
| 3-187, gnl|mm7|chrX (98056715-98056582) | |
| 3-187, gnl|oryCun1|scaffold_200400 (74965-75836) | |
| 3-187, gnl|oryCun1|scaffold_200400 (75417-75277) | |
| 3-187, gnl|panTro1|chr17 (43254867-43255735) | |
| 3-187, gnl|panTro1|chr17 (43255335-43255191) | |
| 3-187, gnl|rheMac2|chr15 (47270675-47270531) | |
| 3-187, gnl|rheMac2|chr18 (43975780-43976785) | |
| 3-187, gnl|rn3|chr18 (70664357-70663660) | |
| 301-436, gnl|bosTau2|chr24 (39349790-39349655) | |
| 301-436, gnl|canFam2|chr1 (27049689-27049500) | |
| 301-436, gnl|canFam2|chr1 (27049524-27049657) | |
| 301-436, gnl|danRer3|chr12 (22811020-22811184) | |
| 301-436, gnl|danRer3|chr12 (22811172-22811046) | |
| 301-436, gnl|dasNov1|scaffold_41099 (1285-1092) | |
| 301-436, gnl|dasNov1|scaffold_41099 (1116-1252) | |
| 301-436, gnl|echTel1|scaffold_178069 (4783-4597) | |
| 301-436, gnl|echTel1|scaffold_178069 (4613-4746) | |
| 301-436, gnl|fr1|chrUn (22467441-22467259) | |
| 301-436, gnl|fr1|chrUn (22467292-22467417) | |
| 301-436, gnl|hg17|chr18 (46688397-46688590) | |
| 301-436, gnl|Hg17|chr18 (46688429-46688564) | |
| 301-436, gnl|hg17|chr9 (29816260-29816398) | |
| 301-436, gnl|loxAfr1|scaffold_24871 (39714-39524) | |
| 301-436, gnl|loxAfr1|scaffold_24871 (39548-39684) | |
| 301-436, gnl|mm7|chr18 (74196235-74196041) | |
| 301-436, gnl|mm7|chr18 (74196063-74196198) | |
| 301-436, gnl|Mm7|chr18 (74196200-74196065) | |
| 301-436, gnl|monDom2|scaffold_95 (111634-111821) | |
| 301-436, gnl|monDom2|scaffold_95 (111799-111662) | |
| 301-436, gnl|panTro1|chr17 (43284102-43284295) | |
| 301-436, gnl|panTro1|chr17 (43284270-43284135) | |
| 301-436, gnl|rheMac2|chr15 (47270939-47270801) | |
| 301-436, gnl|rheMac2|chr18 (44009217-44009411) | |
| 301-436, gnl|rn3|chr18 (70651503-70651316) | |
| 301-436, gnl|rn3|chr18 (70651336-70651474) | |
| 301-436, gnl|tetNig1|chr12 (8210628-8210808) | |
| 301-436, gnl|tetNig1|chr12 (8210791-8210665) | |
| 301-436, gnl|xenTro1|scaffold_731 (485383-485555) | |
| 301-436, gnl|xenTro1|scaffold_731 (485550-485415) | |
| 437-587, gnl|bosTau2|chr24 (39347054-39346904) | |
| 437-587, gnl|canFam2|chr1 (27047364-27047159) | |
| 437-587, gnl|canFam2|chr1 (27047193-27047340) | |
| 437-587, gnl|danRer3|chr12 (22811567-22811739) | |
| 437-587, gnl|danRer3|chr12 (22811720-22811573) | |
| 437-587, gnl|dasNov1|scaffold_199349 (4221-4021) | |
| 437-587, gnl|dasNov1|scaffold_199349 (4055-4202) | |
| 437-587, gnl|echTel1|scaffold_178069 (252-47) | |
| 437-587, gnl|echTel1|scaffold_178069 (81-228) | |
| 437-587, gnl|fr1|chrUn (22467187-22467005) | |
| 437-587, gnl|fr1|chrUn (22467034-22467181) | |
| 437-587, gnl|hg17|chr18 (46693149-46693352) | |
| 437-587, gnl|Hg17|chr18 (46693169-46693319) | |
| 437-587, gnl|hg17|chr9 (29816112-29816259) | |
| 437-587, gnl|loxAfr1|scaffold_24871 (29424-29219) | |
| 437-587, gnl|loxAfr1|scaffold_24871 (29253-29400) | |
| 437-587, gnl|mm7|chr18 (74192336-74192132) | |
| 437-587, gnl|mm7|chr18 (74192165-74192312) | |
| 437-587, gnl|Mm7|chr18 (74192314-74192164) | |
| 437-587, gnl|monDom2|scaffold_95 (113201-113412) | |
| 437-587, gnl|monDom2|scaffold_95 (113380-113233) | |
| 437-587, gnl|oryCun1|scaffold_177724 (95810-96016) | |
| 437-587, gnl|oryCun1|scaffold_177724 (95981-95834) | |
| 437-587, gnl|panTro1|chr17 (43288856-43289059) | |
| 437-587, gnl|panTro1|chr17 (43289027-43288880) | |
| 437-587, gnl|rheMac2|chr15 (47271085-47270940) | |
| 437-587, gnl|rheMac2|chr18 (44013935-44014140) | |
| 437-587, gnl|rn3|chr18 (70647960-70647758) | |
| 437-587, gnl|rn3|chr18 (70647789-70647936) | |
| 437-587, gnl|tetNig1|chr12 (8210887-8211085) | |
| 437-587, gnl|tetNig1|chr12 (8211058-8210911) | |
| 437-587, gnl|xenTro1|scaffold_731 (486256-486470) | |
| 437-587, gnl|xenTro1|scaffold_731 (486428-486281) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| sme (0.305437) | |
| nco (0.161734) | |
| che (0.136314) | |
| eru (0.120048) | |
| cty (0.10408) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| nco (0.161734) | |
| che (0.136314) | |
| eru (0.120048) | |
| cty (0.10408) |