Ss1.1-Lng1-LNG010021E06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGAGCTAGCGCTGGACCTGAGAGCCGGAGGGGTGTGCGCGCGCGCCCTCGCCCCTGTTG CGCGCGCAGTGTCACCTTGGGCGCGAGCGGGGCCGCGCGCGCACGGGACCGGGAGCCGAG GGCCATTGAGTGGCGATGGCGGCGACGGCGAGTCCCGGGGCCGGTGGGATGGACGCGAAG CCCCGTACCTCCCCTAAGTCGGTCAAGTTCCTGTTTGGGGGCCTGGCCGGGATGGGAGCA ACAGTTTTTGTACAGCCCCTGGACCTGGTGAAGAACCGGATGCAGTTGAGTGGAGAAGGA GCCAAGACACGAGAGTACAAAACCAGCTTCCATGCCCTCACGAGCATCCTGAGGGCGGAA GGCCTGAGGGGCATTTATACAGGGCTGTCAGCTGGCCTGCTTCGCCAGGCCACCTATACC ACCACTCGCCTTGGTATCTATACCGTGCTGTTTGAGCGCCTGACTGGGGCTGACGGTACA CCCCCTGGCTTTCTGCTGAAGGCCCTGATTGGCATGACTGCAGGCGCAACTGGTGCCTTT GTGGGAACGCCAGCTGAGGTGGCTCTTATCCGCATGACTGCTGATGGCCGGCTTCCACCT GACCAGCGCCGGGGCTACAAAAATGTATTTGACGCCTTGATTCGAATTGTCCGGGAAGAA GGGGTCCCCACACTATGGAGGGGCTGCATCCCTACCATGGCTCGGGCCGTCGTCGTCAAT GCCGCCCAGCTCGCCTCCTACTCTCAGTCCAAGCAGTTTTTACTGGACTCAGGCTACTTC TCTGACAACATCCTGTGCCACTTCTGTGCCAGCATGATCAGTGGCCTGGTCACCACTGCC GCCTCTATGCCTGTGGACATTGCCAAGACCCGGATCCAGAACATGCGAACGATTGACGGG AAGCCGGAATACAAGAACGGGCTGGATGTGCTGGTGAAGGTCATCCGCTATGAGGGCTTC TTCAGCCTATGGAAGGGCTTTACGCCGTACTATGCCCGTCTGGGCCCCCACACCGTCCTC ACCTTCATCTTCTTGGAGCAGATGAACAAGGCCTACAAGCGTCTCTTCCTCAGTGGCTGA GGCGGGAGCAGAGGCCCGGAGCCGCTGTGCCGGGGGCTCCCACTTGCCCGCTGCTTCTAC AGTCAGTGCGCCCCCCCCGGGGGGCCTAGACTCTGCTGCCCTGGGCCCCTCTATTTATTA CCCCTCCACCGTGTGGTCCCCTCCTCTGCGGTAAAGACCTTGGTGTGTCCTGCCCCTGCT CCAGCTTGCCCTGCCCAACTTGTCGCCATCGTCATGATCTCTGTCCCCGGCTGTACCTTG GGGGAGCTGGGAGGCTCCACGCGGATTTCCGGCTTCCCCTTGGGTATTAGTTGAGGGCAC AGAGGACAGCAGGCGACCTGTGCCGCCCCCGCCCCCTGCCCCGCCGCCCTCAGTGAGGCA ACCGAGGCAGAGTTGAGGGGACCGGAGAGCCCAGAAGCTGTCCGGAAGGTCAAGGGTCTG CAGCGGGAGGACGCGGCCCTTCCTCCCGCCCCCTCCCTGAGGACATGGTTAATAAATTGG ATTGATGACACCAAAAAAAAAAAAAAAAAAAAAAAAGGGCAGGAGAGGGAGGACACTGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGAGCTAGCGCTGGACCTGAGAGCCGGAGGGGTGTGCGCGCGCGCCCTCGCCCCTGTTG CGCGCGCAGTGTCACCTTGGGCGCGAGCGGGGCCGCGCGCGCACGGGACCGGGAGCCGAG GGCCATTGAGTGGCGATGGCGGCGACGGCGAGTCCCGGGGCCGGTGGGATGGACGCGAAG CCCCGTACCTCCCCTAAGTCGGTCAAGTTCCTGTTTGGGGGCCTGGCCGGGATGGGAGCA ACAGTTTTTGTACAGCCCCTGGACCTGGTGAAGAACCGGATGCAGTTGAGTGGAGAAGGA GCCAAGACACGAGAGTACAAAACCAGCTTCCATGCCCTCACGAGCATCCTGAGGGCGGAA GGCCTGAGGGGCATTTATACAGGGCTGTCAGCTGGCCTGCTTCGCCAGGCCACCTATACC ACCACTCGCCTTGGTATCTATACCGTGCTGTTTGAGCGCCTGACTGGGGCTGACGGTACA CCCCCTGGCTTTCTGCTGAAGGCCCTGATTGGCATGACTGCAGGCGCAACTGGTGCCTTT GTGGGAACGCCAGCTGAGGTGGCTCTTATCCGCATGACTGCTGATGGCCGGCTTCCACCT GACCAGCGCCGGGGCTACAAAAATGTATTTGACGCCTTGATTCGAATTGTCCGGGAAGAA GGGGTCCCCACACTATGGAGGGGCTGCATCCCTACCATGGCTCGGGCCGTCGTCGTCAAT GCCGCCCAGCTCGCCTCCTACTCTCAGTCCAAGCAGTTTTTACTGGACTCAGGCTACTTC TCTGACAACATCCTGTGCCACTTCTGTGCCAGCATGATCAGTGGCCTGGTCACCACTGCC GCCTCTATGCCTGTGGACATTGCCAAGACCCGGATCCAGAACATGCGAACGATTGACGGG AAGCCGGAATACAAGAACGGGCTGGATGTGCTGGTGAAGGTCATCCGCTATGAGGGCTTC TTCAGCCTATGGAAGGGCTTTACGCCGTACTATGCCCGTCTGGGCCCCCACACCGTCCTC ACCTTCATCTTCTTGGAGCAGATGAACAAGGCCTACAAGCGTCTCTTCCTCAGTGGCTGA GGCGGGAGCAGAGGCCCGGAGCCGCTGTGCCGGGGGCTCCCACTTGCCCGCTGCTTCTAC AGTCAGTGCGCCCCCCCCGGGGGGCCTAGACTCTGCTGCCCTGGGCCCCTCTATTTATTA CCCCTCCACCGTGTGGTCCCCTCCTCTGCGGTAAAGACCTTGGTGTGTCCTGCCCCTGCT CCAGCTTGCCCTGCCCAACTTGTCGCCATCGTCATGATCTCTGTCCCCGGCTGTACCTTG GGGGAGCTGGGAGGCTCCACGCGGATTTCCGGCTTCCCCTTGGGTATTAGTTGAGGGCAC AGAGGACAGCAGGCGACCTGTGCCGCCCCCGCCCCCTGCCCCGCCGCCCTCAGTGAGGCA ACCGAGGCAGAGTTGAGGGGACCGGAGAGCCCAGAAGCTGTCCGGAAGGTCAAGGGTCTG CAGCGGGAGGACGCGGCCCTTCCTCCCGCCCCCTCCCTGAGGACATGGTTAATAAATTGG ATTGATGACACCAAAAAAAAAAAAAAAAAAAAAAAAGGGCAGGAGAGGGAGGACACTGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 770-1596, - strand, RNAz p=0.908363 | |
| 1084-1200, - strand, RNAz p=0.981772 | |
| 1277-1392, + strand, RNAz p=0.965946 | |
| 1280-1386, - strand, RNAz p=0.943268 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 770-1596, - strand, RNAz p=0.908363 | |
| 1084-1200, - strand, RNAz p=0.981772 | |
| 1277-1392, + strand, RNAz p=0.965946 | |
| 1280-1386, - strand, RNAz p=0.943268 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_003562, - |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 4-231, gnl|bosTau2|chr19 (14831273-14831046) | |
| 4-231, gnl|Hg17|chr17 (4784079-4783855) | |
| 4-231, gnl|Mm7|chr11 (70728568-70728341) | |
| 383-591, gnl|bosTau2|chr19 (14830203-14829995) | |
| 383-591, gnl|canFam2|chr5 (34675730-34675516) | |
| 383-591, gnl|danRer3|chr7 (53917850-53917638) | |
| 383-591, gnl|dasNov1|scaffold_41425 (14349-14135) | |
| 383-591, gnl|echTel1|scaffold_308456 (105942-105728) | |
| 383-591, gnl|fr1|chrUn (306957424-306957105) | |
| 383-591, gnl|hg17|chr17 (4782805-4783019) | |
| 383-591, gnl|Hg17|chr17 (4783016-4782808) | |
| 383-591, gnl|loxAfr1|scaffold_190711 (1119-905) | |
| 383-591, gnl|mm7|chr11 (70727354-70727568) | |
| 383-591, gnl|Mm7|chr11 (70727565-70727357) | |
| 383-591, gnl|monDom2|scaffold_66 (3458419-3458200) | |
| 383-591, gnl|oryCun1|scaffold_177492 (78671-78457) | |
| 383-591, gnl|panTro1|chr19 (5111067-5111281) | |
| 383-591, gnl|rheMac2|chr16 (4739889-4740103) | |
| 383-591, gnl|rn3|chr10 (57539232-57539446) | |
| 383-591, gnl|tetNig1|chrUn_random (87048930-87048609) | |
| 383-591, gnl|xenTro1|scaffold_967 (202438-202217) | |
| 770-873, gnl|bosTau2|chr19 (14829464-14829361) | |
| 770-873, gnl|Hg17|chr17 (4782296-4782193) | |
| 770-873, gnl|Mm7|chr11 (70726846-70726743) | |
| 924-1392, gnl|bosTau2|chr19 (14829079-14828624) | |
| 924-1392, gnl|canFam2|chr5 (34677228-34676770) | |
| 924-1392, gnl|echTel1|scaffold_308456 (107613-107206) | |
| 924-1392, gnl|hg17|chr17 (4781333-4781774) | |
| 924-1392, gnl|Hg17|chr17 (4781937-4781500) | |
| 924-1392, gnl|mm7|chr11 (70725880-70726333) | |
| 924-1392, gnl|Mm7|chr11 (70726496-70726035) | |
| 924-1392, gnl|monDom2|scaffold_66 (3460504-3459911) | |
| 924-1392, gnl|oryCun1|scaffold_177492 (80453-80033) | |
| 924-1392, gnl|panTro1|chr19 (5109595-5110036) | |
| 924-1392, gnl|rheMac2|chr16 (4738409-4738850) | |
| 924-1392, gnl|rn3|chr10 (57537722-57538177) | |
| 1418-1596, gnl|bosTau2|chr18 (35562047-35561869) | |
| 1418-1596, gnl|Hg17|chr17 (4781497-4781351) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-231, gnl|bosTau2|chr19 (14831273-14831046) | |
| 4-231, gnl|Hg17|chr17 (4784079-4783855) | |
| 4-231, gnl|Mm7|chr11 (70728568-70728341) | |
| 383-591, gnl|bosTau2|chr19 (14830203-14829995) | |
| 383-591, gnl|canFam2|chr5 (34675730-34675516) | |
| 383-591, gnl|danRer3|chr7 (53917850-53917638) | |
| 383-591, gnl|dasNov1|scaffold_41425 (14349-14135) | |
| 383-591, gnl|echTel1|scaffold_308456 (105942-105728) | |
| 383-591, gnl|fr1|chrUn (306957424-306957105) | |
| 383-591, gnl|hg17|chr17 (4782805-4783019) | |
| 383-591, gnl|Hg17|chr17 (4783016-4782808) | |
| 383-591, gnl|loxAfr1|scaffold_190711 (1119-905) | |
| 383-591, gnl|mm7|chr11 (70727354-70727568) | |
| 383-591, gnl|Mm7|chr11 (70727565-70727357) | |
| 383-591, gnl|monDom2|scaffold_66 (3458419-3458200) | |
| 383-591, gnl|oryCun1|scaffold_177492 (78671-78457) | |
| 383-591, gnl|panTro1|chr19 (5111067-5111281) | |
| 383-591, gnl|rheMac2|chr16 (4739889-4740103) | |
| 383-591, gnl|rn3|chr10 (57539232-57539446) | |
| 383-591, gnl|tetNig1|chrUn_random (87048930-87048609) | |
| 383-591, gnl|xenTro1|scaffold_967 (202438-202217) | |
| 770-873, gnl|bosTau2|chr19 (14829464-14829361) | |
| 770-873, gnl|Hg17|chr17 (4782296-4782193) | |
| 770-873, gnl|Mm7|chr11 (70726846-70726743) | |
| 924-1392, gnl|bosTau2|chr19 (14829079-14828624) | |
| 924-1392, gnl|canFam2|chr5 (34677228-34676770) | |
| 924-1392, gnl|echTel1|scaffold_308456 (107613-107206) | |
| 924-1392, gnl|hg17|chr17 (4781333-4781774) | |
| 924-1392, gnl|Hg17|chr17 (4781937-4781500) | |
| 924-1392, gnl|mm7|chr11 (70725880-70726333) | |
| 924-1392, gnl|Mm7|chr11 (70726496-70726035) | |
| 924-1392, gnl|monDom2|scaffold_66 (3460504-3459911) | |
| 924-1392, gnl|oryCun1|scaffold_177492 (80453-80033) | |
| 924-1392, gnl|panTro1|chr19 (5109595-5110036) | |
| 924-1392, gnl|rheMac2|chr16 (4738409-4738850) | |
| 924-1392, gnl|rn3|chr10 (57537722-57538177) | |
| 1418-1596, gnl|bosTau2|chr18 (35562047-35561869) | |
| 1418-1596, gnl|Hg17|chr17 (4781497-4781351) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| ece (0.687916) | |
| mas (0.42061) | |
| mcp (0.341297) | |
| nje (0.33184) | |
| pty (0.285429) | |
| cov (0.264306) | |
| nms (0.213858) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eru (0.120048) | |
| clu (0.119646) | |
| med (0.116252) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.687916) | |
| mas (0.42061) | |
| mcp (0.341297) | |
| nje (0.33184) | |
| pty (0.285429) | |
| cov (0.264306) | |
| nms (0.213858) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eru (0.120048) | |
| clu (0.119646) | |
| med (0.116252) | |
| cty (0.10408) | |
| eje (0.0988338) |